Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPRR3 Sequence: fasta or formatted (169aa) NCBI GI: 4885607
Description:

small proline-rich protein 3

Referenced in:

Late Cornified Envelope Family

Other entries for this name:
alt mRNA [169aa] small proline-rich protein 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.2          2           1
 C cysteine            4.7          8           1
 D aspartate           0.6          1           1
 E glutamate           7.7         13           1
 F phenylalanine       2.4          4           1
 G glycine             8.3         14           1
 H histidine           0.6          1           1
 I isoleucine          3.0          5           1
 K lysine             11.8         20           1
 L leucine             1.2          2           1
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline            22.5         38           3
 Q glutamine          10.1         17           4
 R arginine            0.0          0           0
 S serine              3.6          6           2
 T threonine          10.1         17           2
 V valine              8.9         15           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small proline-rich protein 3 
SPRR3                 1.000   small proline-rich protein 3 
SPRR1B                0.245   small proline-rich protein 1B 
SPRR1A                0.236   small proline-rich protein 1A 
PRG4                  0.135   proteoglycan 4 isoform D 
PRG4                  0.135   proteoglycan 4 isoform C 
PRG4                  0.135   proteoglycan 4 isoform B 
PRG4                  0.135   proteoglycan 4 isoform A 
DGKK                  0.107   diacylglycerol kinase kappa 
LOC100292665          0.107   PREDICTED: similar to hCG1793647 
LOC100290400          0.107   PREDICTED: hypothetical protein XP_002347531 
PCLO                  0.104   piccolo isoform 2 
PCLO                  0.104   piccolo isoform 1 
TPRX1                 0.104   tetra-peptide repeat homeobox 
MUC2                  0.101   mucin 2 precursor 
SFPQ                  0.089   splicing factor proline/glutamine rich (polypyrimidin...
TTN                   0.081   titin isoform N2-A 
DIAPH1                0.078   diaphanous 1 isoform 2 
DIAPH1                0.078   diaphanous 1 isoform 1 
SPRR4                 0.078   small proline-rich protein 4 
LDB3                  0.075   LIM domain binding 3 isoform 2 
LDB3                  0.075   LIM domain binding 3 isoform 1 
LOC100133001          0.075   PREDICTED: similar to hCG30082, partial 
PTPN23                0.075   protein tyrosine phosphatase, non-receptor type 23 [...
PRX                   0.069   periaxin isoform 2 
SYNJ1                 0.069   synaptojanin 1 isoform a 
SYNJ1                 0.069   synaptojanin 1 isoform b 
LOC100290496          0.069   PREDICTED: hypothetical protein XP_002348126 
LOC645971             0.063   PREDICTED: similar to hCG2036794 
LOC645971             0.063   PREDICTED: similar to hCG2036794 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press