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Search of human proteins with 27369497
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27369497 carbohydrate (N-acetylglucosamine-6-O)
sulfotransferase 2 [Homo sapiens]
(530 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 1078 0.0
gi|23238228 chondroitin 6-sulfotransferase 7 [Homo sapiens] 348 7e-96
gi|21362052 carbohydrate (N-acetylglucosamine 6-O) sulfotransfer... 246 4e-65
gi|11055976 carbohydrate (N-acetylglucosamine 6-O) sulfotransfer... 246 4e-65
gi|5031735 carbohydrate (N-acetylglucosamine 6-O) sulfotransfera... 224 2e-58
gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase... 182 5e-46
gi|19923281 chondroitin 6-sulfotransferase 3 [Homo sapiens] 162 9e-40
gi|23943787 dermatan sulfate epimerase-like [Homo sapiens] 47 4e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 41 0.002
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 41 0.002
gi|41352718 deltex homolog 1 [Homo sapiens] 40 0.004
gi|208431824 forkhead box I3 [Homo sapiens] 40 0.005
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 40 0.005
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 40 0.005
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 40 0.005
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 40 0.005
gi|40288197 GATA binding protein 6 [Homo sapiens] 40 0.007
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.012
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.012
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.012
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 39 0.015
gi|7706501 WW domain binding protein 11 [Homo sapiens] 39 0.015
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 38 0.026
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.026
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.026
gi|194353976 transcription factor AP-2 epsilon (activating enhan... 38 0.026
gi|4758392 forkhead box D1 [Homo sapiens] 37 0.034
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 37 0.034
gi|50511941 EMI domain containing 1 [Homo sapiens] 37 0.034
gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens] 37 0.045
>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
2 [Homo sapiens]
Length = 530
Score = 1078 bits (2789), Expect = 0.0
Identities = 530/530 (100%), Positives = 530/530 (100%)
Query: 1 MSRSPQRALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCA 60
MSRSPQRALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCA
Sbjct: 1 MSRSPQRALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCA 60
Query: 61 GYALLLVLTMLNLLDYKWHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARL 120
GYALLLVLTMLNLLDYKWHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARL
Sbjct: 61 GYALLLVLTMLNLLDYKWHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARL 120
Query: 121 DLRTPYRPPAAAVGAAPAAAAGMAGVAAPPGNGTRGTGGVGDKRQLVYVFTTWRSGSSFF 180
DLRTPYRPPAAAVGAAPAAAAGMAGVAAPPGNGTRGTGGVGDKRQLVYVFTTWRSGSSFF
Sbjct: 121 DLRTPYRPPAAAVGAAPAAAAGMAGVAAPPGNGTRGTGGVGDKRQLVYVFTTWRSGSSFF 180
Query: 181 GELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDMLSALYRCDLSVFQLYSPAGSG 240
GELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDMLSALYRCDLSVFQLYSPAGSG
Sbjct: 181 GELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDMLSALYRCDLSVFQLYSPAGSG 240
Query: 241 GRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVCKKCPPQRLARFEEECRKYRT 300
GRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVCKKCPPQRLARFEEECRKYRT
Sbjct: 241 GRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVCKKCPPQRLARFEEECRKYRT 300
Query: 301 LVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVASSRIRSRHGLIRESLQVVRSRD 360
LVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVASSRIRSRHGLIRESLQVVRSRD
Sbjct: 301 LVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVASSRIRSRHGLIRESLQVVRSRD 360
Query: 361 PRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVICNSMAKTLQTALQPPDWLQGHY 420
PRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVICNSMAKTLQTALQPPDWLQGHY
Sbjct: 361 PRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVICNSMAKTLQTALQPPDWLQGHY 420
Query: 421 LVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSGSGSSSKPFVVSARNATQAA 480
LVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSGSGSSSKPFVVSARNATQAA
Sbjct: 421 LVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSGSGSSSKPFVVSARNATQAA 480
Query: 481 NAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEEVKDLSKTLLRKPRL 530
NAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEEVKDLSKTLLRKPRL
Sbjct: 481 NAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEEVKDLSKTLLRKPRL 530
>gi|23238228 chondroitin 6-sulfotransferase 7 [Homo sapiens]
Length = 486
Score = 348 bits (893), Expect = 7e-96
Identities = 193/403 (47%), Positives = 253/403 (62%), Gaps = 22/403 (5%)
Query: 130 AAAVG----AAPAAAAGMAGVAAPPGNGTRGTGGVGD----KRQLVYVFTTWRSGSSFFG 181
AAA G A A AA G P + +G VG+ ++Q +YV TWR+GSSF G
Sbjct: 59 AAAAGEREQGAEARAAEEGGANQSPRFPSNLSGAVGEAVSREKQHIYVHATWRTGSSFLG 118
Query: 182 ELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDMLSALYRCDLSVFQLYSPAGSGG 241
ELFNQ+P+VF+LYEP+WH+WQ LYPGDA SLQGA RDML +L+RCD SV +LY+P G
Sbjct: 119 ELFNQHPDVFYLYEPMWHLWQALYPGDAESLQGALRDMLRSLFRCDFSVLRLYAPPGDPA 178
Query: 242 ------RNLTTLGIFGAATNKVVCSSPLCPA--YRKEVVGLVDDRVCKK-CPPQRLARFE 292
NLTT +F TNKV+CS PLCP + VGLV+D C++ CPP + E
Sbjct: 179 ARAPDTANLTTAALFRWRTNKVICSPPLCPGAPRARAEVGLVEDTACERSCPPVAIRALE 238
Query: 293 EECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVASSRIRSRHGLIRES 352
ECRKY +VIK VR+ D+ VL PLLRDP L+LKV+ L RDPRAV +SR++SR GL+RES
Sbjct: 239 AECRKYPVVVIKDVRLLDLGVLVPLLRDPGLNLKVVQLFRDPRAVHNSRLKSRQGLLRES 298
Query: 353 LQVVRSRD--PRAHRMPFLEAAGHKLGAKKEGVGGP--ADYHALGAMEVICNSMAKTLQT 408
+QV+R+R R HR+ G + G + + AD+ GA+EVIC + + L
Sbjct: 299 IQVLRTRQRGDRFHRVLLAHGVGARPGGQSRALPAAPRADFFLTGALEVICEAWLRDLLF 358
Query: 409 ALQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSGSG-SSSK 467
A P WL+ YL +RYEDLV P LRR+ F GL ++ FALNMT G+ + +
Sbjct: 359 ARGAPAWLRRRYLRLRYEDLVRQPRAQLRRLLRFSGLRALAALDAFALNMTRGAAYGADR 418
Query: 468 PFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYER 510
PF +SAR+A +A +AWR L+ +Q++QVE C M +L Y R
Sbjct: 419 PFHLSARDAREAVHAWRERLSREQVRQVEAACAPAMRLLAYPR 461
>gi|21362052 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
5 [Homo sapiens]
Length = 411
Score = 246 bits (628), Expect = 4e-65
Identities = 146/369 (39%), Positives = 213/369 (57%), Gaps = 34/369 (9%)
Query: 161 GDKRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDML 220
G+ R V V ++WRSGSSF G+LF+Q+P+VF+L EP WHVW L G A +L A RD++
Sbjct: 59 GEDRVHVLVLSSWRSGSSFLGQLFSQHPDVFYLMEPAWHVWTTLSQGSAATLHMAVRDLM 118
Query: 221 SALYRCDLSVFQLYSPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVC 280
+++ CD+ VF Y P RNL+ F AT++ +CS P C A+ + + D VC
Sbjct: 119 RSIFLCDMDVFDAYMPQ---SRNLS--AFFNWATSRALCSPPACSAFPRGTISKQD--VC 171
Query: 281 KK-CPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVAS 339
K C Q + E CR Y +V+K VR F++ VL PLL DPAL+L+++HLVRDPRAV
Sbjct: 172 KTLCTRQPFSLAREACRSYSHVVLKEVRFFNLQVLYPLLSDPALNLRIVHLVRDPRAVLR 231
Query: 340 SRIRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVIC 399
S RE+ + +RD G LG + V AD H L + +C
Sbjct: 232 S---------REAAGPILARD-----------NGIVLGTNGKWV--EADPH-LRLIREVC 268
Query: 400 NSMAKTLQTA-LQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNM 458
S + + A L+PP +L+G Y +VR+EDL +P+ +R +Y F GL ++P++E + N+
Sbjct: 269 RSHVRIAEAATLKPPPFLRGRYRLVRFEDLAREPLAEIRALYAFTGLTLTPQLEAWIHNI 328
Query: 459 TSGSGSSS--KPFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEE 516
T GSG + F S+RNA + AWR AL F +I +V+E C + +LGY V S ++
Sbjct: 329 THGSGIGKPIEAFHTSSRNARNVSQAWRHALPFTKILRVQEVCAGALQLLGYRPVYSADQ 388
Query: 517 VKDLSKTLL 525
+DL+ L+
Sbjct: 389 QRDLTLDLV 397
>gi|11055976 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
6 [Homo sapiens]
Length = 395
Score = 246 bits (628), Expect = 4e-65
Identities = 144/369 (39%), Positives = 212/369 (57%), Gaps = 34/369 (9%)
Query: 161 GDKRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDML 220
G+ R V V ++WRSGSSF G+LFNQ+P+VF+L EP WHVW L G A +L A RD++
Sbjct: 37 GEARVHVLVLSSWRSGSSFVGQLFNQHPDVFYLMEPAWHVWTTLSQGSAATLHMAVRDLV 96
Query: 221 SALYRCDLSVFQLYSPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVC 280
+++ CD+ VF Y P RNL+ L F A ++ +CS P C A+ + + + VC
Sbjct: 97 RSVFLCDMDVFDAYLP---WRRNLSDL--FQWAVSRALCSPPACSAFPRGAIS--SEAVC 149
Query: 281 KK-CPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVAS 339
K C Q E CR Y +V+K VR F++ VL PLL DPAL+L+++HLVRDPRAV
Sbjct: 150 KPLCARQSFTLAREACRSYSHVVLKEVRFFNLQVLYPLLSDPALNLRIVHLVRDPRAVLR 209
Query: 340 SRIRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVIC 399
SR ++ L R++ G LG G AD L + +C
Sbjct: 210 SREQTAKALARDN--------------------GIVLGT--NGTWVEAD-PGLRVVREVC 246
Query: 400 NSMAKTLQTA-LQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNM 458
S + + A L+PP +L+G Y +VR+EDL +P+ +R +Y F GL ++P++E + N+
Sbjct: 247 RSHVRIAEAATLKPPPFLRGRYRLVRFEDLAREPLAEIRALYAFTGLSLTPQLEAWIHNI 306
Query: 459 TSGSGSSSK--PFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEE 516
T GSG ++ F S+RNA + AWR AL F +I++V+E C + +LGY V S +E
Sbjct: 307 THGSGPGARREAFKTSSRNALNVSQAWRHALPFAKIRRVQELCAGALQLLGYRPVYSEDE 366
Query: 517 VKDLSKTLL 525
++L+ L+
Sbjct: 367 QRNLALDLV 375
>gi|5031735 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
4 [Homo sapiens]
Length = 386
Score = 224 bits (571), Expect = 2e-58
Identities = 132/364 (36%), Positives = 198/364 (54%), Gaps = 29/364 (7%)
Query: 163 KRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLYPGDAVSLQGAARDMLSA 222
+R V V ++WRSGSSF G+LF Q+P+VF+L EP WHVW A L A RD++ A
Sbjct: 41 ERMHVLVLSSWRSGSSFVGQLFGQHPDVFYLMEPAWHVWMTFKQSTAWMLHMAVRDLIRA 100
Query: 223 LYRCDLSVFQLYSPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAY-RKEVVGLVDDRVCK 281
++ CD+SVF Y G ++ +F ++ +CS+P C + E++ R+
Sbjct: 101 VFLCDMSVFDAYMEPGPRRQS----SLFQWENSRALCSAPACDIIPQDEIIPRAHCRLL- 155
Query: 282 KCPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVASSR 341
C Q E+ CR Y +V+K VR F++ L PLL+DP+L+L ++HLVRDPRAV SR
Sbjct: 156 -CSQQPFEVVEKACRSYSHVVLKEVRFFNLQSLYPLLKDPSLNLHIVHLVRDPRAVFRSR 214
Query: 342 IRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVICNS 401
R++ L+ +S V+ H+ KKE Y+ M+VIC S
Sbjct: 215 ERTKGDLMIDSRIVMGQ---------------HEQKLKKED----QPYYV---MQVICQS 252
Query: 402 MAKTLQTALQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSG 461
+ +T P LQ YL+VRYEDL PV R+Y+FVGL P ++ + N+T G
Sbjct: 253 QLEIYKTIQSLPKALQERYLLVRYEDLARAPVAQTSRMYEFVGLEFLPHLQTWVHNITRG 312
Query: 462 SGSSSKPFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEEVKDLS 521
G F +AR+A + AWR +L ++++ ++++ C M +LGY V S +E ++L
Sbjct: 313 KGMGDHAFHTNARDALNVSQAWRWSLPYEKVSRLQKACGDAMNLLGYRHVRSEQEQRNLL 372
Query: 522 KTLL 525
LL
Sbjct: 373 LDLL 376
>gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
[Homo sapiens]
Length = 411
Score = 182 bits (463), Expect = 5e-46
Identities = 119/369 (32%), Positives = 182/369 (49%), Gaps = 35/369 (9%)
Query: 167 VYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLYP--------GDAVSLQGAARD 218
+ + T RSGSSF G+LFNQ+ +VF+L+EP++HV L P D + GA+RD
Sbjct: 63 ILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRD 122
Query: 219 MLSALYRCDLSVFQLYSPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDR 278
+L +LY CDL + Y N TT IF ++V+CS P+C + L +
Sbjct: 123 LLRSLYDCDLYFLENYIKPPPV--NHTTDRIFRRGASRVLCSRPVCDPPGPADLVLEEGD 180
Query: 279 VCKKCPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVRDPRAVA 338
+KC L E CR+ + IK VRV +V L L+ DP L+LKVI LVRDPR +
Sbjct: 181 CVRKCGLLNLTVAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGIL 240
Query: 339 SSRIRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHALGAMEVI 398
+SR + RD ++L G G + + +
Sbjct: 241 ASRSET-------------FRDT------------YRLWRLWYGTGRKPYNLDVTQLTTV 275
Query: 399 CNSMAKTLQTALQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNM 458
C + ++ T L P WL+G Y++VRYEDL +P+K +Y F+G+ + + ++ N
Sbjct: 276 CEDFSNSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNN 335
Query: 459 TSGSGSSSKPFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYERVNSPEEVK 518
T G + K + RN+ A WR L++ + + C Q +A LGY+ S EE+K
Sbjct: 336 TRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKIAASEEELK 395
Query: 519 DLSKTLLRK 527
+ S +L+ +
Sbjct: 396 NPSVSLVEE 404
>gi|19923281 chondroitin 6-sulfotransferase 3 [Homo sapiens]
Length = 479
Score = 162 bits (409), Expect = 9e-40
Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 37/375 (9%)
Query: 160 VGDKRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLY--PGDAVSLQGAA- 216
V R+ V + T R+GSSF GE FNQ +F+L+EP+WH+ + + PG A + A
Sbjct: 128 VAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANAAGSALV 187
Query: 217 -RDMLSALYRCDLSVFQLY-SPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGL 274
RD+L L+ CDL V + + +P +LT +F +++ +C P+C + K+V
Sbjct: 188 YRDVLKQLFLCDLYVLEHFITPLPED--HLTQF-MFRRGSSRSLCEDPVCTPFVKKVF-- 242
Query: 275 VDDRVCK--KCPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVR 332
+ CK +C P + E CR+ + +K VR+ + L PL DP LDL+VI LVR
Sbjct: 243 -EKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVR 301
Query: 333 DPRAVASSRIRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHAL 392
DPRAV +SR+ + G + + +L+ G G ++E V
Sbjct: 302 DPRAVLASRMVAFAGKYKTWKK-------------WLDDEGQD-GLREEEVQ-------- 339
Query: 393 GAMEVICNSMAKTLQTALQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEME 452
+ C S+ + + L+ P WL+G Y++VRYED+ P++ R +Y F G+ ++P++E
Sbjct: 340 -RLRGNCESIRLSAELGLRQPAWLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVE 398
Query: 453 QFALNMTSGSGSSSKPFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYERVN 512
+ T + S + + +N+++ WR ++ F+ + V+ C M + GY+
Sbjct: 399 DWIQKNTQAAHDGSGIY-STQKNSSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLAR 457
Query: 513 SPEEVKDLSKTLLRK 527
+ + S +LL +
Sbjct: 458 DAAALTNRSVSLLEE 472
>gi|23943787 dermatan sulfate epimerase-like [Homo sapiens]
Length = 1222
Score = 47.0 bits (110), Expect = 4e-05
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 325 LKVIHLVRDPRAVASSRIRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVG 384
++ +++VRDPRA S + + + SL +++ ++ +E K G
Sbjct: 1034 MRALYIVRDPRAWIYSMLYNS----KPSLYSLKNVPEHLAKLFKIEGGKGKCNLNS---G 1086
Query: 385 GPADYHAL---------GAMEVICNSMAKTLQTALQ-PPDWLQGHYLVVRYEDLVGDPVK 434
+Y L A+ ++ + AL+ D L Y +V++ED+V P K
Sbjct: 1087 YAFEYEPLRKELSKSKSNAVSLLSHLWLANTAAALRINTDLLPTSYQLVKFEDIVHFPQK 1146
Query: 435 TLRRVYDFVGLLVSPEMEQFALNMTSGSGSSSKPFV-VSARNATQAANAWRTALTFQQIK 493
T R++ F+G+ +SP +LN + S++ ++ + N W+ L +IK
Sbjct: 1147 TTERIFAFLGIPLSPA----SLNQILFATSTNLFYLPYEGEISPTNTNVWKQNLPRDEIK 1202
Query: 494 QVEEFCYQPMAVLGYER 510
+E C+ M LGY +
Sbjct: 1203 LIENICWTLMDRLGYPK 1219
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 85 QCNPDGPLG-AAAGAAGGSWGRPGPPP----AGPPRAHARLDLRTPYRPPAAAVGAAPAA 139
+ P GP G A A G G PGPP AGPP A + + A A P
Sbjct: 783 ESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG 842
Query: 140 AAGMAG-------VAAPPGNGTRGTGG 159
AG AG V AP G RG+ G
Sbjct: 843 PAGPAGPPGPIGNVGAPGAKGARGSAG 869
Score = 37.7 bits (86), Expect = 0.026
Identities = 29/74 (39%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGV 146
P GP G A A G G GP PAGP A R PP A A P A G G
Sbjct: 768 PIGPPGPAG--APGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA 825
Query: 147 AAPPGN-GTRGTGG 159
PG+ G +G G
Sbjct: 826 KGEPGDAGAKGDAG 839
Score = 36.2 bits (82), Expect = 0.076
Identities = 45/163 (27%), Positives = 55/163 (33%), Gaps = 36/163 (22%)
Query: 4 SPQRALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCAGYA 63
SP R PGA + PA P A P PG P P G R +
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGA-----PGAPGAPGPVGPAGKSGDRGET-------- 1069
Query: 64 LLLVLTMLNLLDYKWHKEPLQQCNPDGPLGAA--AGAAG--GSWGRPGPPPAGPPRAHAR 119
P P GP+GA AG G G G G + H
Sbjct: 1070 -----------------GPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRG 1112
Query: 120 LD-LRTPYRPPAAAVGAAPAAAAGMAGVAAPPGN-GTRGTGGV 160
L+ P PP + P+ A+G AG PPG+ G G G+
Sbjct: 1113 FSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGL 1155
Score = 34.7 bits (78), Expect = 0.22
Identities = 29/77 (37%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 88 PDGPLGAAA--GAAG--GSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGM 143
P GP G GA G G G PG P G P A + R P PP A G
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEP--GEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 144 AGVAAPPG-NGTRGTGG 159
G PPG G RG G
Sbjct: 241 PGERGPPGPQGARGLPG 257
Score = 33.9 bits (76), Expect = 0.38
Identities = 33/93 (35%), Positives = 35/93 (37%), Gaps = 27/93 (29%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRP-----------------PA 130
PDG G A G GRPGPP GPP A + + P P
Sbjct: 549 PDGKTGPPGPA--GQDGRPGPP--GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Query: 131 AAVGAAPAAAAGMAGVAAPPG----NGTRGTGG 159
AVG PA G AG PPG G RG G
Sbjct: 605 GAVG--PAGKDGEAGAQGPPGPAGPAGERGEQG 635
Score = 32.0 bits (71), Expect = 1.4
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 82 PLQQCNPDGPLGAAAGAAGGSWGRPGPP----PAGPPRAHARLDLRTPYRP--PAAAVG- 134
P ++ P P A A G+ G GPP PAGPP + + P P + G
Sbjct: 307 PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGP 366
Query: 135 ------AAPAAAAGMAGVAAPPG----NGTRGTGG 159
P AG AG A PG G +G G
Sbjct: 367 QGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 401
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 82 PLQQCNPDGPLG-AAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAA 140
P P GP+G A A G+ G GPP A T + P AA P
Sbjct: 843 PAGPAGPPGPIGNVGAPGAKGARGSAGPPGA------------TGF--PGAAGRVGPPGP 888
Query: 141 AGMAGVAAPPGNGTRGTGGVGDK 163
+G AG PPG + GG G +
Sbjct: 889 SGNAGPPGPPGPAGK-EGGKGPR 910
Score = 31.2 bits (69), Expect = 2.5
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 97 GAAG--GSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAPPGN- 152
GA G GS G PGP GPP + P PP A A G G A PG
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595
Query: 153 GTRGTGG 159
G RG G
Sbjct: 596 GERGVPG 602
Score = 31.2 bits (69), Expect = 2.5
Identities = 29/87 (33%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 82 PLQQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAA 141
P P GP G A G GG R PAG P P PP A A
Sbjct: 888 PSGNAGPPGPPGPA-GKEGGKGPRGETGPAGRPGEVG------PPGPPGPAGEKGSPGAD 940
Query: 142 GMAGVAAPPG----NGTRGTGGVGDKR 164
G AG PG G RG G+ +R
Sbjct: 941 GPAGAPGTPGPQGIAGQRGVVGLPGQR 967
Score = 31.2 bits (69), Expect = 2.5
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 88 PDGPLGAA-----AGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAG 142
P GP G+ +GA+G + R P AG P L P PP A G
Sbjct: 1119 PPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVG 1178
Query: 143 MAGVAAPPG 151
G PPG
Sbjct: 1179 PPGPPGPPG 1187
Score = 30.8 bits (68), Expect = 3.2
Identities = 31/89 (34%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 88 PDGPLGA-AAGAAGGSWGRPGPP----------PAGPPRAHARLDLRTPYRPPAAAVGAA 136
P G G A A GS GR G P PAGPP A P P +
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 137 PAAAAGMAGVAAPPG-NGTRGTGGV-GDK 163
AG AG P G G G G GDK
Sbjct: 1068 ETGPAGPAGPVGPVGARGPAGPQGPRGDK 1096
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/77 (38%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 88 PDGPLGAAAGAAG--GSWGRPGPPPA-GPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMA 144
P GP GA G AG G G+ GPP G P +H R+ R P PP G
Sbjct: 919 PPGPAGAP-GPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQP 977
Query: 145 GVAAPPG-NGTRGTGGV 160
G PPG GT G G+
Sbjct: 978 GPDGPPGPAGTTGQRGI 994
Score = 35.0 bits (79), Expect = 0.17
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 88 PDGPLGAAAGAAG--GSWGRPGPP-PAGPPRAHARLDLRTPYRPPAA--AVG-AAPAAAA 141
P GP G G+AG G +G GPP P GP P PP +VG A P
Sbjct: 1156 PPGPNGEQ-GSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPP 1214
Query: 142 GMAGVAAPPGNGTRGTGGVGD 162
G G PPG T +GD
Sbjct: 1215 GEPGPPGPPGPPGHLTAALGD 1235
Score = 34.7 bits (78), Expect = 0.22
Identities = 28/74 (37%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 90 GPLGAAAGAAG--GSWGRPGPPP-AGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGV 146
GPLG G AG G G PGP GPP + R P A A P G GV
Sbjct: 801 GPLGPP-GPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGV 859
Query: 147 AAPPGN-GTRGTGG 159
PG G +G G
Sbjct: 860 KGEPGEPGQKGDAG 873
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 40.4 bits (93), Expect = 0.004
Identities = 28/61 (45%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 106 PGPPPAGPPRAHARLDLRTPYRPPAAAVGAA--PAAAAGMAGVAAPPGNGTRGTGGVGDK 163
P PPP GPP A A RP A GAA A AAG A A PPG R G G
Sbjct: 234 PPPPPGGPPGALA-------VRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGA 286
Query: 164 R 164
R
Sbjct: 287 R 287
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 90 GPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGA-----APAAAAGMA 144
GP AAA AA G P PPP PP A A L+ P P A G A A A A
Sbjct: 63 GPPSAAAAAAAAYLGAPPPPP--PPGAAAGPFLQPP--PAAGTFGCSQRPFAQPAPAAPA 118
Query: 145 GVAAPPGNGTRGTGGVGDKRQLVYVFTTWRSGSSFFGELFNQNPE 189
AAP G G G + + L+ + S S+ PE
Sbjct: 119 SPAAPAGPGELGWLSMASREDLMKMVRPPYSYSALIAMAIQSAPE 163
Score = 31.6 bits (70), Expect = 1.9
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 21/71 (29%)
Query: 101 GSWGRPG-PPPAG-------PPRAHARLDLRTPYRPPAAA-----------VGAAP--AA 139
G + +PG PPPA PP A A L PPAAA VG P AA
Sbjct: 10 GVYSQPGLPPPAATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGPGVGGPPSAAA 69
Query: 140 AAGMAGVAAPP 150
AA A + APP
Sbjct: 70 AAAAAYLGAPP 80
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 94 AAAGAAGGSWGRPGPPP-----AGPPRAHARLDLR-TPYRPPAAAVGAAPAAAAGMAGVA 147
A G GG GR PPP A PPR A R P PP + G A G
Sbjct: 400 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459
Query: 148 APPGNGTRGTGGVGDKRQ 165
+ G RG G VG KR+
Sbjct: 460 SRGSRGNRG-GNVGGKRK 476
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 94 AAAGAAGGSWGRPGPPP-----AGPPRAHARLDLR-TPYRPPAAAVGAAPAAAAGMAGVA 147
A G GG GR PPP A PPR A R P PP + G A G
Sbjct: 501 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 560
Query: 148 APPGNGTRGTGGVGDKRQ 165
+ G RG G VG KR+
Sbjct: 561 SRGSRGNRG-GNVGGKRK 577
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 94 AAAGAAGGSWGRPGPPP-----AGPPRAHARLDLR-TPYRPPAAAVGAAPAAAAGMAGVA 147
A G GG GR PPP A PPR A R P PP + G A G
Sbjct: 397 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456
Query: 148 APPGNGTRGTGGVGDKRQ 165
+ G RG G VG KR+
Sbjct: 457 SRGSRGNRG-GNVGGKRK 473
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 94 AAAGAAGGSWGRPGPPP-----AGPPRAHARLDLR-TPYRPPAAAVGAAPAAAAGMAGVA 147
A G GG GR PPP A PPR A R P PP + G A G
Sbjct: 498 AVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 557
Query: 148 APPGNGTRGTGGVGDKRQ 165
+ G RG G VG KR+
Sbjct: 558 SRGSRGNRG-GNVGGKRK 574
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 39.7 bits (91), Expect = 0.007
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 91 PLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRP-PAAAVGAAPA----AAAGMAG 145
P G+ GAAGG G GP AG AH + R PY P P A GAA AAAG G
Sbjct: 234 PYGSGGGAAGG--GAAGPGGAGSAAAH--VSARFPYSPSPPMANGAAREPGGYAAAGSGG 289
Query: 146 VAAPPGNGT 154
G G+
Sbjct: 290 AGGVSGGGS 298
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.9 bits (89), Expect = 0.012
Identities = 31/81 (38%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 82 PLQQCNPDGPLGAAAGAAG--GSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAA 139
P+ P GP G A GA G G G PG P G P + R P PP A
Sbjct: 202 PMGPMGPRGPPGPA-GAPGPQGFQGNPGEP--GEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 140 AAGMAGVAAPPG-NGTRGTGG 159
G AG PPG G RG G
Sbjct: 259 KPGKAGERGPPGPQGARGFPG 279
Score = 38.5 bits (88), Expect = 0.015
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 88 PDGPLG--AAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAG 145
P GP G A+G AG S R P P GP + P PP P +G G
Sbjct: 1144 PPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPG------PRGRSGETG 1197
Query: 146 VAAPPGN----GTRGTGGVG 161
A PPGN G G G G
Sbjct: 1198 PAGPPGNPGPPGPPGPPGPG 1217
Score = 35.0 bits (79), Expect = 0.17
Identities = 28/74 (37%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGV 146
P GP G A A G G GPP PAG A R PP A A P A G G
Sbjct: 790 PIGPPGPAG--ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847
Query: 147 AAPPGN-GTRGTGG 159
G G +G G
Sbjct: 848 KGEQGEAGQKGDAG 861
Score = 34.7 bits (78), Expect = 0.22
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPP----PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGM 143
P GP+G A G G PG P AGP A + P P PA A+G
Sbjct: 355 PPGPVGPAGGP-----GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN 409
Query: 144 AGVAAPPG-NGTRGTGGV 160
G PG G+ G G+
Sbjct: 410 PGTDGIPGAKGSAGAPGI 427
Score = 34.3 bits (77), Expect = 0.29
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 90 GPLGAAA--GAAG-----GSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAA 141
GP GA GAAG GS G PGPP P GP R PP A A
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Query: 142 GMAGVAAPPGN-------GTRGTGGVGDKRQLV 167
G G PG+ G G G+ +R +V
Sbjct: 951 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIV 983
Score = 33.1 bits (74), Expect = 0.65
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 90 GPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAP 149
GP GAA A G+ G+PG PAGPP P A A P A G G P
Sbjct: 336 GPAGAAG--ARGNDGQPG--PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 391
Query: 150 PGN-GTRGTGG 159
G GT G+ G
Sbjct: 392 RGEPGTPGSPG 402
Score = 29.3 bits (64), Expect = 9.3
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 82 PLQQCNPDGPLGAAA--GAAG--GSWGRPGPP-------PAGPPRAHARLDLRTPYRPPA 130
P P G GA GA G G+ GR GPP P GPP + P
Sbjct: 877 PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK------DGPKG 930
Query: 131 AAVGAAPAAAAGMAGVAAPPG-NGTRGTGG 159
A + P AG G+ P G G +G G
Sbjct: 931 ARGDSGPPGRAGEPGLQGPAGPPGEKGEPG 960
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.9 bits (89), Expect = 0.012
Identities = 31/81 (38%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 82 PLQQCNPDGPLGAAAGAAG--GSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAA 139
P+ P GP G A GA G G G PG P G P + R P PP A
Sbjct: 133 PMGPMGPRGPPGPA-GAPGPQGFQGNPGEP--GEPGVSGPMGPRGPPGPPGKPGDDGEAG 189
Query: 140 AAGMAGVAAPPG-NGTRGTGG 159
G AG PPG G RG G
Sbjct: 190 KPGKAGERGPPGPQGARGFPG 210
Score = 38.5 bits (88), Expect = 0.015
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 88 PDGPLG--AAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAG 145
P GP G A+G AG S R P P GP + P PP P +G G
Sbjct: 1075 PPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPG------PRGRSGETG 1128
Query: 146 VAAPPGN----GTRGTGGVG 161
A PPGN G G G G
Sbjct: 1129 PAGPPGNPGPPGPPGPPGPG 1148
Score = 35.0 bits (79), Expect = 0.17
Identities = 28/74 (37%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGV 146
P GP G A A G G GPP PAG A R PP A A P A G G
Sbjct: 721 PIGPPGPAG--ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778
Query: 147 AAPPGN-GTRGTGG 159
G G +G G
Sbjct: 779 KGEQGEAGQKGDAG 792
Score = 34.7 bits (78), Expect = 0.22
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPP----PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGM 143
P GP+G A G G PG P AGP A + P P PA A+G
Sbjct: 286 PPGPVGPAGGP-----GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN 340
Query: 144 AGVAAPPG-NGTRGTGGV 160
G PG G+ G G+
Sbjct: 341 PGTDGIPGAKGSAGAPGI 358
Score = 34.3 bits (77), Expect = 0.29
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 90 GPLGAAA--GAAG-----GSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAAPAAAA 141
GP GA GAAG GS G PGPP P GP R PP A A
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Query: 142 GMAGVAAPPGN-------GTRGTGGVGDKRQLV 167
G G PG+ G G G+ +R +V
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIV 914
Score = 33.1 bits (74), Expect = 0.65
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 90 GPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAP 149
GP GAA A G+ G+PG PAGPP P A A P A G G P
Sbjct: 267 GPAGAAG--ARGNDGQPG--PAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 322
Query: 150 PGN-GTRGTGG 159
G GT G+ G
Sbjct: 323 RGEPGTPGSPG 333
Score = 29.3 bits (64), Expect = 9.3
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 82 PLQQCNPDGPLGAAA--GAAG--GSWGRPGPP-------PAGPPRAHARLDLRTPYRPPA 130
P P G GA GA G G+ GR GPP P GPP + P
Sbjct: 808 PTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGK------DGPKG 861
Query: 131 AAVGAAPAAAAGMAGVAAPPG-NGTRGTGG 159
A + P AG G+ P G G +G G
Sbjct: 862 ARGDSGPPGRAGEPGLQGPAGPPGEKGEPG 891
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.9 bits (89), Expect = 0.012
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 88 PDGPLGAAAGAAGGSWGRPGPP-------PAGPPRAHARLDLRTPYRPPAAAVGAAPAAA 140
P+ P A GG RPGPP PAGP A+ LR P A + PAAA
Sbjct: 87 PEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAK--LRPPPEGSAGSCAPVPAAA 144
Query: 141 AGMAGVAAPPGNGTRGTG 158
A AG P + G
Sbjct: 145 AVAAGPEPAPAGPAKPAG 162
Score = 38.1 bits (87), Expect = 0.020
Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 91 PLGAA-AGAAGGSWGRPGPPPAGPPRAHARLDLRTPYR--PPAAAVGAAPAAAAGMAGVA 147
P GAA AG A + G PG P PP AR P R PP+ PA A A
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKL 126
Query: 148 APPGNGTRGT 157
PP G+ G+
Sbjct: 127 RPPPEGSAGS 136
Score = 37.4 bits (85), Expect = 0.034
Identities = 34/87 (39%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 82 PLQQCNPDGPLGAAAGAAG-------GSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAV- 133
P P P AA AA + RP PAGPP A + PPAAA
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP------PPAAAQN 305
Query: 134 ----GAAPA---AAAGMAGVAAPPGNG 153
GAAPA AA G AGV+ PG G
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPG 332
Score = 37.0 bits (84), Expect = 0.045
Identities = 49/171 (28%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 ALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCAGYALLLV 67
A P G +A P P P PG PA P + A +L + +A
Sbjct: 158 AKPAGPAALAARAGPGPGPG---PGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPA 214
Query: 68 LTMLN-----LLDYKWHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPP--------PAGPP 114
++++N LL P +GAAA A + P P P PP
Sbjct: 215 VSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Query: 115 RAHARLDLRT--PYRPPAAAVGAAPAAAA---GMAGVAAPPGNGTRGTGGV 160
A A L P PP AA P AAA G AG A P G GV
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGV 325
Score = 29.6 bits (65), Expect = 7.1
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 82 PLQQCNPDGPLGAAAGAAGGSWGRPGP-------PPAGPPRAH------ARLDLRTPYRP 128
P P GP AA A G PGP PAGP A A L+ P
Sbjct: 154 PAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAP 213
Query: 129 PAAAVGAAPAAAAGMAGVAAP 149
+ V PAA + AAP
Sbjct: 214 AVSLVNNGPAALLPLPKPAAP 234
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 38.5 bits (88), Expect = 0.015
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 93 GAAAGAAGGSWGRPG-PPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAPPG 151
G GA GGS R G P PPR +R R + GA+P+ ++ AG PG
Sbjct: 171 GEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAG--KTPG 228
Query: 152 NGTRGTG 158
G+R +G
Sbjct: 229 TGSRNSG 235
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 38.5 bits (88), Expect = 0.015
Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 106 PGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAPPG-NGTRG 156
PGPPP GPP A P RPP G P G PPG G RG
Sbjct: 408 PGPPPLGPPPA-------PPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRG 452
Score = 35.0 bits (79), Expect = 0.17
Identities = 43/152 (28%), Positives = 48/152 (31%), Gaps = 30/152 (19%)
Query: 4 SPQRALPPGALPRLLQAAPAAAPRALLPQWPRRPGRRWPASPLGMKVFRRKALVLCAGYA 63
S Q+A P P +QA P P L P P P R P P G+
Sbjct: 388 SQQQAPPQSVPPSQIQAPPMPGPPPLGP--PPAPPLRPPGPPTGLPPGPPPGAP------ 439
Query: 64 LLLVLTMLNLLDYKWHKEPLQQCNPDGPL-----GAAAGAAGGSWGRPGPPPAGPPRAHA 118
L + PL + P GP G G G PGPPP GPP
Sbjct: 440 -----PFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGL--PPGPPPRGPP---- 488
Query: 119 RLDLRTPYRPPAAAVGAAPAAAAGMAGVAAPP 150
P PP A G P M PP
Sbjct: 489 ------PRLPPPAPPGIPPPRPGMMRPPLVPP 514
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 37.7 bits (86), Expect = 0.026
Identities = 28/80 (35%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 84 QQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGM 143
QQ P + AGG P PP GPP P PP PAAA G
Sbjct: 144 QQPGPSEHIERRVSNAGGP---PAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGA 200
Query: 144 AG--VAAPPGNGTRGTGGVG 161
G APP +G GG G
Sbjct: 201 GGGPPPAPPLPAAQGPGGGG 220
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 37.7 bits (86), Expect = 0.026
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 91 PLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVG-AAPAAAAGMAGVAAP 149
PL AG GG+ P AGP R+ RPPA+ G AP A G +
Sbjct: 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSS 116
Query: 150 PG--NGTRGTGGVGDK 163
PG +GT G +G K
Sbjct: 117 PGRASGTTRPGPLGQK 132
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.7 bits (86), Expect = 0.026
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 91 PLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVG-AAPAAAAGMAGVAAP 149
PL AG GG+ P AGP R+ RPPA+ G AP A G +
Sbjct: 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSS 116
Query: 150 PG--NGTRGTGGVGDK 163
PG +GT G +G K
Sbjct: 117 PGRASGTTRPGPLGQK 132
>gi|194353976 transcription factor AP-2 epsilon (activating enhancer
binding protein 2 epsilon) [Homo sapiens]
Length = 442
Score = 37.7 bits (86), Expect = 0.026
Identities = 30/77 (38%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 88 PDGPLGAAAGAAG------GSWGRPGPPPAGPPRAHARLDLRTPYRP-----PAAAVGAA 136
PDG LGAAAG A ++G P PP P A A + + PY P P G A
Sbjct: 12 PDG-LGAAAGGARLSSLPQAAYG-PAPPLCHTPAATAAAEFQPPYFPPPYPQPPLPYGQA 69
Query: 137 PAAAAGMAGVAAPPGNG 153
P AAA +A P G
Sbjct: 70 PDAAAAFPHLAGDPYGG 86
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 37.4 bits (85), Expect = 0.034
Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 27/98 (27%)
Query: 88 PDGPLGAAAGAAGGSWGR---------PGPPPAGPPRAH---ARLDLRTPYR-------- 127
P P GAAA A ++G PGP PA +A A R+P+
Sbjct: 312 PPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPGASALARSPFSIESIIGGS 371
Query: 128 --PPAAAVGAAPAAAAGMAG-----VAAPPGNGTRGTG 158
P AAA AA AAAA A VAAPP G+ G G
Sbjct: 372 LGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGG 409
Score = 35.4 bits (80), Expect = 0.13
Identities = 29/64 (45%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Query: 96 AGAAGGSWGRPGP-----PPAGPPRAHAR----------LDLRTPYRPPAAAVGAAPAAA 140
AGAAGG+ G P PPA PP HA L L PY PP+A AA AAA
Sbjct: 242 AGAAGGA-GDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQL-PPYAPPSALFAAAAAAA 299
Query: 141 AGMA 144
A A
Sbjct: 300 AAAA 303
Score = 33.1 bits (74), Expect = 0.65
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 94 AAAGAAGGSWGRPGPPPAGPPRAHARLDLRTP--YRP---PAAAVGAAPAAAAGMAGVAA 148
AAA AA ++ PPP PP A RT YRP AA G PA+AA G A
Sbjct: 295 AAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPGA 354
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 37.4 bits (85), Expect = 0.034
Identities = 27/69 (39%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 93 GAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAPPGN 152
GAA GAAG S GP P PP A AA G+AP A A G
Sbjct: 124 GAAGGAAGASPAEEGPQP--PPGA-------------AAPAGSAPGGVAAGASPGLGAGA 168
Query: 153 GTRGTGGVG 161
G G GG G
Sbjct: 169 GAAGCGGEG 177
Score = 33.1 bits (74), Expect = 0.65
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 90 GPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAGVAAP 149
G G AAGA+ G PP A P A P A GA+P AG AG A
Sbjct: 124 GAAGGAAGASPAEEGPQPPPGAAAPAGSA---------PGGVAAGASPGLGAG-AGAAGC 173
Query: 150 PGNG 153
G G
Sbjct: 174 GGEG 177
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 37.4 bits (85), Expect = 0.034
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 78 WHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPP-PAGPPRAHARLDLRTPYRPPAAAVGAA 136
W P Q DG L GA WG PGP P G + + +R P P
Sbjct: 180 WGPPPAQGSPGDGGLQDQVGA----WGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPGSPG 235
Query: 137 PAAAAGMAGVAAPPG 151
A A G G PPG
Sbjct: 236 RAGAVGTPGERGPPG 250
Score = 32.3 bits (72), Expect = 1.1
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 34/107 (31%)
Query: 88 PDGPLGAA--AGAAG--GSWGRPGPP----PAGPPR----AHARLDL------------- 122
P GP G+ AGA G G G PGPP P GPP HAR+
Sbjct: 227 PQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTET 286
Query: 123 -----RTPYRPPAAAVGAAPAAAAGMAGVAAPPGN----GTRGTGGV 160
+ P PP P G GV PG+ G G G+
Sbjct: 287 NNHWPQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGI 333
>gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]
Length = 422
Score = 37.0 bits (84), Expect = 0.045
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 73 LLDYKWHKEPLQQCNPDGPLGAAAGAAGGSWGRPGPPPAGPPRAHARLDLRTPYRPPAAA 132
+++ K H + QQ D AAAG A G+WG PPA PRA L P P A
Sbjct: 82 VIEGKVHPQRRQQGALDRKAAAAAGEA-GAWGGDREPPAAGPRA-----LGPPAEEPLLA 135
Query: 133 VG-------AAPAAAAGMAGVAAP 149
AP +AG G AP
Sbjct: 136 ANGTVPSWPTAPVPSAGEPGEEAP 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,882,590
Number of Sequences: 37866
Number of extensions: 1271580
Number of successful extensions: 10183
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 446
Number of HSP's that attempted gapping in prelim test: 8053
Number of HSP's gapped (non-prelim): 2177
length of query: 530
length of database: 18,247,518
effective HSP length: 107
effective length of query: 423
effective length of database: 14,195,856
effective search space: 6004847088
effective search space used: 6004847088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.