Search of human proteins with 25777713

Search of human proteins with 25777713

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ...   337   2e-93
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ...   314   2e-86
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro...   296   7e-81
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro...   296   7e-81
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro...   296   7e-81
gi|239753827 PREDICTED: similar to S-phase kinase-associated pro...   236   8e-63
gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo ...   236   8e-63
gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo ...   236   8e-63
gi|5032161 elongin C [Homo sapiens]                                    38   0.003
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]            37   0.006
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]            37   0.006
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]            37   0.006
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ...    35   0.037
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]            34   0.049
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]            34   0.049
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          33   0.11 
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...    30   0.92 
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...    30   0.92 
gi|222144283 hypothetical protein LOC65998 [Homo sapiens]              29   1.6  
gi|108773787 retinoblastoma 1 [Homo sapiens]                           29   1.6  
gi|122937247 unc-13 homolog A [Homo sapiens]                           29   1.6  
gi|54607104 hypothetical protein LOC56941 [Homo sapiens]               29   1.6  
gi|54607106 hypothetical protein LOC56941 [Homo sapiens]               29   1.6  
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ...    29   2.1  
gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo s...    29   2.1  
gi|168480080 BCL2/adenovirus E1B 19kD interacting protein 2 [Hom...    28   2.7  
gi|20336761 heme binding protein 1 [Homo sapiens]                      28   2.7  
gi|95147555 microtubule-associated protein 1A [Homo sapiens]           28   3.5  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    28   3.5  
gi|60593095 GRAM domain containing 2 [Homo sapiens]                    28   3.5  

>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
           sapiens]
          Length = 163

 Score =  337 bits (865), Expect = 2e-93
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
           MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
           WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
           KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163


>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
           sapiens]
          Length = 160

 Score =  314 bits (805), Expect = 2e-86
 Identities = 155/160 (96%), Positives = 156/160 (97%), Gaps = 1/160 (0%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
           MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
           WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 160
           KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV    Q+C
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV-GSTQFC 159


>gi|239755758 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score =  296 bits (757), Expect = 7e-81
 Identities = 145/163 (88%), Positives = 151/163 (92%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
           MPSIKLQSS GEIFEVDVEI KQSVTIKTMLEDLGM+DEGD DPVPLPNVNAAILKKVIQ
Sbjct: 1   MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60

Query: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
           WCTHH+DD PPP+  ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61  WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
           KTVANM+  KTPEEI KTFN+KNDFTEE EAQV +ENQ CEEK
Sbjct: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEK 163


>gi|239750260 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score =  296 bits (757), Expect = 7e-81
 Identities = 145/163 (88%), Positives = 151/163 (92%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
           MPSIKLQSS GEIFEVDVEI KQSVTIKTMLEDLGM+DEGD DPVPLPNVNAAILKKVIQ
Sbjct: 1   MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60

Query: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
           WCTHH+DD PPP+  ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61  WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
           KTVANM+  KTPEEI KTFN+KNDFTEE EAQV +ENQ CEEK
Sbjct: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEK 163


>gi|239744568 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score =  296 bits (757), Expect = 7e-81
 Identities = 145/163 (88%), Positives = 151/163 (92%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
           MPSIKLQSS GEIFEVDVEI KQSVTIKTMLEDLGM+DEGD DPVPLPNVNAAILKKVIQ
Sbjct: 1   MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60

Query: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
           WCTHH+DD PPP+  ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61  WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
           KTVANM+  KTPEEI KTFN+KNDFTEE EAQV +ENQ CEEK
Sbjct: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEK 163


>gi|239753827 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 202

 Score =  236 bits (601), Expect = 8e-63
 Identities = 123/170 (72%), Positives = 139/170 (81%), Gaps = 9/170 (5%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57
           +PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+   
Sbjct: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91

Query: 58  ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
              +IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151

Query: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQVRKENQWCEE 162
           GLLDV CKTVA +IKGK PEEI      +    T  EEAQ+ KENQWCEE
Sbjct: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201


>gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo
           sapiens]
          Length = 202

 Score =  236 bits (601), Expect = 8e-63
 Identities = 123/170 (72%), Positives = 139/170 (81%), Gaps = 9/170 (5%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57
           +PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+   
Sbjct: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91

Query: 58  ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
              +IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151

Query: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQVRKENQWCEE 162
           GLLDV CKTVA +IKGK PEEI      +    T  EEAQ+ KENQWCEE
Sbjct: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201


>gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo
           sapiens]
          Length = 202

 Score =  236 bits (601), Expect = 8e-63
 Identities = 123/170 (72%), Positives = 139/170 (81%), Gaps = 9/170 (5%)

Query: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK--- 57
           +PSIKL SSDGE+FEVDVEIAKQSVT+K MLE+LGMDD GD+DPVPLPNVNAAILK+   
Sbjct: 33  IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGMDD-GDNDPVPLPNVNAAILKRSFR 91

Query: 58  ---VIQWCTHHKDDPPPP-EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
              +IQWCT+ KD+PPPP E DEN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 92  LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151

Query: 114 GLLDVTCKTVANMIKGKTPEEI-RKTFNIKNDFTEEEEAQVRKENQWCEE 162
           GLLDV CKTVA +IKGK PEEI      +    T  EEAQ+ KENQWCEE
Sbjct: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201


>gi|5032161 elongin C [Homo sapiens]
          Length = 112

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L KV  + T
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
           +            N      + P+  +  L        EL++AAN+LD
Sbjct: 79  Y-------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111


>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL  SDG  F V  E A  S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78

Query: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
           +            N      + PV  +  L        EL++AAN+LD
Sbjct: 79  YFM----YKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114


>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL  SDG  F V  E A  S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78

Query: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
           +            N      + PV  +  L        EL++AAN+LD
Sbjct: 79  YFM----YKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114


>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL  SDG  F V  E A  S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78

Query: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
           +            N      + PV  +  L        EL++AAN+LD
Sbjct: 79  YFM----YKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114


>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
           sapiens]
          Length = 287

 Score = 34.7 bits (78), Expect = 0.037
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL SS G    V  E A  S+TIK ML   G   E +   V    +++ +L KV  + T
Sbjct: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253

Query: 64  HH 65
           ++
Sbjct: 254 YN 255


>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score = 34.3 bits (77), Expect = 0.049
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL SS G    V  E A  S+TIK ML   G   E +   V    +++ +L KV  + T
Sbjct: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235

Query: 64  H 64
           +
Sbjct: 236 Y 236


>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score = 34.3 bits (77), Expect = 0.049
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
           +KL SS G    V  E A  S+TIK ML   G   E +   V    +++ +L KV  + T
Sbjct: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235

Query: 64  H 64
           +
Sbjct: 236 Y 236


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 15   EVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPED 74
            + D ++  ++    ++  D  +D E + + +P          K + +   H D PP P  
Sbjct: 2157 QTDSDVPPETEECPSITADANIDSEDESETIPTD--------KTVTY--KHMDPPPAPVQ 2206

Query: 75   DENKEKRTDDIPVWDQEFLKVDQ 97
            D +   R  D+ + D E L ++Q
Sbjct: 2207 DRSPSPRHPDVSMVDPEALAIEQ 2229


>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
           sapiens]
          Length = 728

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 69  PPPPEDDE--NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
           PPPP +DE  +K+ +T+D  + ++EFL+ ++G +   +   N  D
Sbjct: 607 PPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQD 651


>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
           sapiens]
          Length = 793

 Score = 30.0 bits (66), Expect = 0.92
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 69  PPPPEDDE--NKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
           PPPP +DE  +K+ +T+D  + ++EFL+ ++G +   +   N  D
Sbjct: 672 PPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQD 716


>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
          Length = 678

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 69  PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 128
           PPPP    ++E+R +  P W  E+L    G+             +GL+ + C      +K
Sbjct: 566 PPPPPPPRSREQRRNYQPRWRGEYLMDYDGSR------------RGLVCMVCGGALATLK 613

Query: 129 GKT-PEEIRKTFNIKNDFTEEEEAQV 153
             T    I +      DFT EE   +
Sbjct: 614 VSTIKRHILQVHPFSMDFTPEERQTI 639


>gi|108773787 retinoblastoma 1 [Homo sapiens]
          Length = 928

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 69 PPPPEDDENKEKRTDDIPVWDQEFLKVDQ 97
          PPPPE+D  ++   +D+P+   EF + ++
Sbjct: 26 PPPPEEDPEQDSGPEDLPLVRLEFEETEE 54


>gi|122937247 unc-13 homolog A [Homo sapiens]
          Length = 1791

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 32  EDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTD 83
           ++    DE  D P+P+P+ N         W   H DDP    DD + + R++
Sbjct: 243 DEYSFQDE-QDKPLPVPS-NQCCNWNYFGWGEQHNDDPDSAVDDRDSDYRSE 292


>gi|54607104 hypothetical protein LOC56941 [Homo sapiens]
          Length = 354

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 56  KKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK 94
           ++++QW        P  ED +  +K   D+P W  +FL+
Sbjct: 285 QRMLQWLATKS---PKKEDSKTPQKEESDVPQWSSQFLQ 320


>gi|54607106 hypothetical protein LOC56941 [Homo sapiens]
          Length = 354

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 56  KKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK 94
           ++++QW        P  ED +  +K   D+P W  +FL+
Sbjct: 285 QRMLQWLATKS---PKKEDSKTPQKEESDVPQWSSQFLQ 320


>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
           sapiens]
          Length = 586

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 33  DLGMDDEGDDDPVPLPNVNAA----ILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 84
           DL    EG   PV +P   AA    +L+ V       K +PP PE+D  KE+  DD
Sbjct: 432 DLVFLREGASSPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEED--KEENKDD 485


>gi|7710143 methyl-CpG binding domain protein 1 isoform 4 [Homo
           sapiens]
          Length = 503

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 33  DLGMDDEGDDDPVPLPNVNAA----ILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 84
           DL    EG   PV +P   AA    +L+ V       K +PP PE+D  KE+  DD
Sbjct: 399 DLVFLREGASSPVQVPGPVAASTEALLQAVDPGLPSVKQEPPDPEED--KEENKDD 452


>gi|168480080 BCL2/adenovirus E1B 19kD interacting protein 2 [Homo
           sapiens]
          Length = 435

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 7   QSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK 66
           ++S G+I  +D +     +  +  +E + + +E  D+  P+P      ++  I   T  +
Sbjct: 98  KASSGDIGSLDYQEFVVDIESRLRMEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPE 157

Query: 67  DDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT---- 122
           D P   E + NK ++    P         D   L + +  +  +D+ G LD   +     
Sbjct: 158 DQPGSLEVNGNKVRKKLMAPDISLTLDPSDGSVLSDDLDESGEIDLDG-LDTPSENSNEF 216

Query: 123 --VANMIKGKTPEEIRKTFNIKNDFTEEEE 150
               ++ K KT E IRK    +    EE+E
Sbjct: 217 EWEDDLPKPKTTEVIRKGSITEYTAAEEKE 246


>gi|20336761 heme binding protein 1 [Homo sapiens]
          Length = 189

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 48  PNVNAAILKKVIQWC---THHKDDPPPPEDDENKEKRTDDIPVWDQEF 92
           PN + ++ KK+  W       + DPP P D   K +  + I V+  +F
Sbjct: 88  PNEDGSLQKKLKVWFRIPNQFQSDPPAPSDKSVKIEEREGITVYSMQF 135


>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
          Length = 2803

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 8    SSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK- 66
            +SD    + D ++  ++    ++  +  +D + D D +P+               THH  
Sbjct: 2503 ASDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPVDKAGGVS-------GTHHPR 2555

Query: 67   ---DDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFEL 103
               D PP P+ D        D+ + D E L  + G +  L
Sbjct: 2556 PGHDPPPLPQPDPRPSPPRPDVCMADPEGLSSESGRVERL 2595


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 44  PVPLPNVNAAILKK-VIQWCTHHKDDPPPP 72
           PVPLP    +IL++   +W +  ++ PPPP
Sbjct: 593 PVPLPEKRRSILREPTFRWTSLTRELPPPP 622


>gi|60593095 GRAM domain containing 2 [Homo sapiens]
          Length = 354

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 46  PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 105
           P+P    A  KK+       K+     ++ E + + T ++ +WD   LKV    +  L++
Sbjct: 266 PMPGWGPACPKKMPNCSPTAKNAVYEEDELEEEPRSTGELRLWDYRLLKVFFVLICFLVM 325

Query: 106 AANYL 110
           +++YL
Sbjct: 326 SSSYL 330


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,191,910
Number of Sequences: 37866
Number of extensions: 361898
Number of successful extensions: 1092
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 64
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.