Guide to the Human Genome
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Name: LOC100132973 Sequence: fasta or formatted (115aa) NCBI GI: 169213749
Description:

PREDICTED: similar to elongin C

Not currently referenced in the text

Other entries for this name:
alt mRNA {115aa} PREDICTED: similar to elongin C
alt mRNA {115aa} PREDICTED: similar to elongin C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         11           2
 C cysteine            2.6          3           1
 D aspartate           4.3          5           1
 E glutamate          10.4         12           1
 F phenylalanine       5.2          6           1
 G glycine             7.0          8           2
 H histidine           2.6          3           1
 I isoleucine          5.2          6           1
 K lysine              7.0          8           2
 L leucine             8.7         10           2
 M methionine          4.3          5           1
 N asparagine          2.6          3           1
 P proline             5.2          6           1
 Q glutamine           0.9          1           1
 R arginine            2.6          3           1
 S serine              6.1          7           2
 T threonine           3.5          4           1
 V valine              7.0          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to elongin C 
LOC100132973          1.000   PREDICTED: similar to elongin C 
LOC100132973          1.000   PREDICTED: similar to elongin C 
TCEB1                 0.862   elongin C 
LOC727788             0.643   PREDICTED: similar to elongin C 
LOC100293395          0.643   PREDICTED: similar to elongin C 
LOC100287778          0.638   PREDICTED: hypothetical protein XP_002342145 
LOC100290177          0.462   PREDICTED: hypothetical protein XP_002347928 
LOC100287483          0.462   PREDICTED: hypothetical protein XP_002344195 
LOC100292879          0.419   PREDICTED: similar to fos39347_1 
LOC652636             0.252   PREDICTED: similar to elongin C 
SKP1                  0.057   S-phase kinase-associated protein 1 isoform b 
SKP1                  0.057   S-phase kinase-associated protein 1 isoform a 
LOC728622             0.057   PREDICTED: similar to S-phase kinase-associated pro...
LOC728622             0.057   PREDICTED: similar to S-phase kinase-associated pro...
LOC728622             0.057   PREDICTED: similar to S-phase kinase-associated pro...
LOC100293583          0.033   PREDICTED: similar to S-phase kinase-associated pro...
LOC100291182          0.033   PREDICTED: hypothetical protein XP_002346652 
LOC100288962          0.033   PREDICTED: hypothetical protein XP_002342489 
NEK4                  0.010   NIMA-related kinase 4 
ACCN5                 0.010   amiloride-sensitive cation channel 5, intestinal [Ho...
DQX1                  0.005   DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...
LOC100290496          0.005   PREDICTED: hypothetical protein XP_002348126 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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