Guide to the Human Genome
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Name: LOC727788 Sequence: fasta or formatted (269aa) NCBI GI: 239747430
Description:

PREDICTED: similar to elongin C

Not currently referenced in the text

Other entries for this name:
alt prot {182aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         18           2
 C cysteine            3.0          8           1
 D aspartate           4.1         11           2
 E glutamate           7.4         20           1
 F phenylalanine       3.0          8           1
 G glycine             8.6         23           3
 H histidine           2.6          7           1
 I isoleucine          4.8         13           1
 K lysine              7.1         19           2
 L leucine             8.9         24           2
 M methionine          3.3          9           1
 N asparagine          2.6          7           1
 P proline             4.5         12           1
 Q glutamine           2.2          6           1
 R arginine            4.1         11           2
 S serine             10.8         29           3
 T threonine           5.2         14           1
 V valine              7.4         20           2
 W tryptophan          0.7          2           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to elongin C 
LOC100293395          1.000   PREDICTED: similar to elongin C 
LOC100287778          0.950   PREDICTED: hypothetical protein XP_002342145 
TCEB1                 0.293   elongin C 
LOC100132973          0.262   PREDICTED: similar to elongin C 
LOC100132973          0.262   PREDICTED: similar to elongin C 
LOC100132973          0.262   PREDICTED: similar to elongin C 
LOC100290177          0.130   PREDICTED: hypothetical protein XP_002347928 
LOC100287483          0.130   PREDICTED: hypothetical protein XP_002344195 
LOC100292879          0.118   PREDICTED: similar to fos39347_1 
LOC652636             0.089   PREDICTED: similar to elongin C 
SKP1                  0.017   S-phase kinase-associated protein 1 isoform b 
SKP1                  0.017   S-phase kinase-associated protein 1 isoform a 
LOC728622             0.016   PREDICTED: similar to S-phase kinase-associated pro...
LOC728622             0.016   PREDICTED: similar to S-phase kinase-associated pro...
LOC728622             0.016   PREDICTED: similar to S-phase kinase-associated pro...
ZNF670                0.014   zinc finger protein 670 
PPM1A                 0.012   protein phosphatase 1A isoform 1 
PPM1A                 0.012   protein phosphatase 1A isoform 2 
PPM1A                 0.012   protein phosphatase 1A isoform 3 
LOC441617             0.010   PREDICTED: similar to hCG1820409 
LOC441617             0.010   PREDICTED: similar to hCG1820409 
LOC441617             0.010   PREDICTED: similar to hCG1820409 
SIRT3                 0.010   sirtuin 3 isoform a 
LOC649330             0.008   PREDICTED: heterogeneous nuclear ribonucleoprotein ...
LOC652665             0.008   PREDICTED: similar to heterogeneous nuclear ribonuc...
LOC649330             0.008   heterogeneous nuclear ribonucleoprotein C-like [Hom...
LEPR                  0.008   leptin receptor isoform 3 
LEPR                  0.008   leptin receptor isoform 2 
LEPR                  0.008   leptin receptor isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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