Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GRAMD2 Sequence: fasta or formatted (354aa) NCBI GI: 60593095
Description:

GRAM domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         14           1
 C cysteine            3.4         12           1
 D aspartate           4.0         14           2
 E glutamate           7.6         27           3
 F phenylalanine       3.4         12           2
 G glycine             4.5         16           2
 H histidine           2.0          7           1
 I isoleucine          3.7         13           1
 K lysine              7.3         26           2
 L leucine            10.7         38           2
 M methionine          2.5          9           1
 N asparagine          3.1         11           1
 P proline             8.2         29           2
 Q glutamine           3.4         12           2
 R arginine            6.2         22           2
 S serine             11.3         40           3
 T threonine           3.1         11           2
 V valine              6.8         24           2
 W tryptophan          2.3          8           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GRAM domain containing 2 
GRAMD3                0.163   GRAM domain containing 3 isoform 5 
GRAMD3                0.163   GRAM domain containing 3 isoform 4 
GRAMD3                0.163   GRAM domain containing 3 isoform 3 
GRAMD3                0.163   GRAM domain containing 3 isoform 1 
GRAMD3                0.163   GRAM domain containing 3 isoform 2 
GRAMD1A               0.095   GRAM domain containing 1A isoform 2 
GRAMD1A               0.095   GRAM domain containing 1A isoform 1 
GRAMD1B               0.095   GRAM domain containing 1B 
GRAMD1C               0.092   GRAM domain containing 1C 
TBC1D9                0.045   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D9B               0.042   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.042   TBC1 domain family, member 9B (with GRAM domain) iso...
GRAMD4                0.035   death-inducing-protein 
TBC1D8                0.031   TBC1 domain family, member 8 
TBC1D8B               0.021   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D8B               0.021   TBC1 domain family, member 8B (with GRAM domain) iso...
PAX8                  0.013   paired box 8 isoform PAX8C 
PLEKHA4               0.011   pleckstrin homology domain containing family A memb...
CASKIN1               0.011   CASK interacting protein 1 
LOC100128719          0.011   PREDICTED: hypothetical protein, partial 
LOC100128719          0.011   PREDICTED: hypothetical protein, partial 
MUC16                 0.010   mucin 16 
OTUD7B                0.010   zinc finger protein Cezanne 
COL11A2               0.010   collagen, type XI, alpha 2 isoform 3 preproprotein ...
NLGN1                 0.010   neuroligin 1 
AFF4                  0.010   ALL1 fused gene from 5q31 
GRID2IP               0.008   glutamate receptor, ionotropic, delta 2 (Grid2) int...
MON1B                 0.008   MON1 homolog B 
YLPM1                 0.008   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press