Guide to the Human Genome
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Name: SKP1 Sequence: fasta or formatted (163aa) NCBI GI: 25777713
Description:

S-phase kinase-associated protein 1 isoform b

Referenced in:

Cullins and SCF Complexes
Cyclins and Related Functions
RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [160aa] S-phase kinase-associated protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          7           2
 C cysteine            1.8          3           1
 D aspartate          11.7         19           3
 E glutamate          11.7         19           4
 F phenylalanine       3.1          5           1
 G glycine             3.7          6           1
 H histidine           1.2          2           2
 I isoleucine          7.4         12           1
 K lysine             10.4         17           2
 L leucine             7.4         12           2
 M methionine          2.5          4           1
 N asparagine          4.9          8           1
 P proline             6.1         10           4
 Q glutamine           4.3          7           1
 R arginine            1.8          3           1
 S serine              2.5          4           2
 T threonine           6.1         10           1
 V valine              6.7         11           1
 W tryptophan          1.8          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S-phase kinase-associated protein 1 isoform b 
SKP1                  0.926   S-phase kinase-associated protein 1 isoform a 
LOC728622             0.869   PREDICTED: similar to S-phase kinase-associated pro...
LOC728622             0.869   PREDICTED: similar to S-phase kinase-associated pro...
LOC728622             0.869   PREDICTED: similar to S-phase kinase-associated pro...
LOC100293583          0.676   PREDICTED: similar to S-phase kinase-associated pro...
LOC100291182          0.676   PREDICTED: hypothetical protein XP_002346652 
LOC100288962          0.676   PREDICTED: hypothetical protein XP_002342489 
TCEB1                 0.042   elongin C 
LOC100132973          0.038   PREDICTED: similar to elongin C 
LOC100132973          0.038   PREDICTED: similar to elongin C 
LOC100132973          0.038   PREDICTED: similar to elongin C 
LOC100287778          0.032   PREDICTED: hypothetical protein XP_002342145 
LOC100293395          0.029   PREDICTED: similar to elongin C 
LOC727788             0.029   PREDICTED: similar to elongin C 
MAP1B                 0.026   microtubule-associated protein 1B 
SF3A1                 0.016   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.016   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
LOC65998              0.013   hypothetical protein LOC65998 
RB1                   0.013   retinoblastoma 1 
UNC13A                0.013   unc-13 homolog A 
C3orf37               0.013   hypothetical protein LOC56941 
C3orf37               0.013   hypothetical protein LOC56941 
MBD1                  0.013   methyl-CpG binding domain protein 1 isoform 2 
MBD1                  0.013   methyl-CpG binding domain protein 1 isoform 4 
BNIP2                 0.010   BCL2/adenovirus E1B 19kD interacting protein 2 [Hom...
HEBP1                 0.010   heme binding protein 1 
MAP1A                 0.010   microtubule-associated protein 1A 
MLL4                  0.010   myeloid/lymphoid or mixed-lineage leukemia 4 
GRAMD2                0.010   GRAM domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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