Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD200R1 Sequence: fasta or formatted (325aa) NCBI GI: 25777659
Description:

CD200 receptor 1 isoform d

Referenced in:

Macrophages and Monocytes

Other entries for this name:
alt prot [348aa] CD200 receptor 1 isoform a
alt prot [188aa] CD200 receptor 1 isoform b
alt prot [165aa] CD200 receptor 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         20           2
 C cysteine            3.7         12           2
 D aspartate           3.4         11           1
 E glutamate           5.8         19           2
 F phenylalanine       1.2          4           1
 G glycine             3.7         12           1
 H histidine           2.8          9           1
 I isoleucine          7.4         24           3
 K lysine              6.8         22           2
 L leucine             9.5         31           3
 M methionine          1.5          5           1
 N asparagine          5.8         19           2
 P proline             4.9         16           2
 Q glutamine           3.1         10           1
 R arginine            3.4         11           1
 S serine              5.8         19           3
 T threonine          10.5         34           2
 V valine              8.0         26           2
 W tryptophan          2.5          8           1
 Y tyrosine            4.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD200 receptor 1 isoform d 
CD200R1               0.980   CD200 receptor 1 isoform a 
CD200R1L              0.537   CD200 cell surface glycoprotein receptor 2 
CD200R1               0.446   CD200 receptor 1 isoform c 
CD200R1               0.426   CD200 receptor 1 isoform b 
PVRL2                 0.033   poliovirus receptor related 2 isoform alpha precursor...
PVRL2                 0.033   poliovirus receptor related 2 isoform delta precurs...
PVRL3                 0.031   poliovirus receptor-related 3 
HMCN1                 0.029   hemicentin 1 
NCAM1                 0.025   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.025   neural cell adhesion molecule 1 isoform 3 
NEGR1                 0.023   neuronal growth regulator 1 
LRIG1                 0.023   leucine-rich repeats and immunoglobulin-like domains...
HMCN2                 0.022   PREDICTED: hemicentin 2 
HMCN2                 0.022   PREDICTED: hemicentin 2 
HMCN2                 0.022   PREDICTED: hemicentin 2 
CADM1                 0.019   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.019   immunoglobulin superfamily, member 4D isoform 1 [Ho...
PVRL1                 0.019   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.019   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.019   poliovirus receptor-related 1 isoform 1 
NCAM2                 0.019   neural cell adhesion molecule 2 precursor 
L1CAM                 0.019   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.019   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.019   L1 cell adhesion molecule isoform 1 precursor 
PVR                   0.019   poliovirus receptor isoform delta 
PVR                   0.019   poliovirus receptor isoform gamma 
PVR                   0.019   poliovirus receptor isoform beta 
PVR                   0.019   poliovirus receptor isoform alpha 
NCAM1                 0.019   neural cell adhesion molecule 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press