Guide to the Human Genome
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Name: CD200R1 Sequence: fasta or formatted (348aa) NCBI GI: 20270365
Description:

CD200 receptor 1 isoform a

Referenced in:

Macrophages and Monocytes

Other entries for this name:
alt prot [188aa] CD200 receptor 1 isoform b
alt prot [165aa] CD200 receptor 1 isoform c
alt prot [325aa] CD200 receptor 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         24           2
 C cysteine            3.4         12           2
 D aspartate           3.2         11           1
 E glutamate           6.3         22           2
 F phenylalanine       1.1          4           1
 G glycine             3.7         13           1
 H histidine           2.9         10           1
 I isoleucine          6.9         24           3
 K lysine              6.6         23           2
 L leucine             9.8         34           3
 M methionine          1.7          6           1
 N asparagine          6.3         22           2
 P proline             4.9         17           2
 Q glutamine           3.4         12           1
 R arginine            3.2         11           1
 S serine              6.0         21           3
 T threonine          10.1         35           2
 V valine              7.5         26           2
 W tryptophan          2.3          8           1
 Y tyrosine            3.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD200 receptor 1 isoform a 
CD200R1               0.916   CD200 receptor 1 isoform d 
CD200R1L              0.492   CD200 cell surface glycoprotein receptor 2 
CD200R1               0.480   CD200 receptor 1 isoform b 
CD200R1               0.398   CD200 receptor 1 isoform c 
PVRL2                 0.030   poliovirus receptor related 2 isoform alpha precursor...
PVRL2                 0.030   poliovirus receptor related 2 isoform delta precurs...
PVRL3                 0.029   poliovirus receptor-related 3 
HMCN1                 0.027   hemicentin 1 
NCAM1                 0.023   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.023   neural cell adhesion molecule 1 isoform 3 
NEGR1                 0.022   neuronal growth regulator 1 
LRIG1                 0.022   leucine-rich repeats and immunoglobulin-like domains...
HMCN2                 0.020   PREDICTED: hemicentin 2 
HMCN2                 0.020   PREDICTED: hemicentin 2 
HMCN2                 0.020   PREDICTED: hemicentin 2 
CADM1                 0.017   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.017   immunoglobulin superfamily, member 4D isoform 1 [Ho...
PVRL1                 0.017   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.017   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.017   poliovirus receptor-related 1 isoform 1 
NCAM2                 0.017   neural cell adhesion molecule 2 precursor 
L1CAM                 0.017   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.017   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.017   L1 cell adhesion molecule isoform 1 precursor 
PVR                   0.017   poliovirus receptor isoform delta 
PVR                   0.017   poliovirus receptor isoform gamma 
PVR                   0.017   poliovirus receptor isoform beta 
PVR                   0.017   poliovirus receptor isoform alpha 
NCAM1                 0.017   neural cell adhesion molecule 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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