Search of human proteins with 253795488

Search of human proteins with 253795488

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo
sapiens]
         (517 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo sapiens]  1061   0.0  
gi|31377841 hypothetical protein LOC55793 isoform 1 [Homo sapiens]    961   0.0  
gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo sapiens]   764   0.0  
gi|253795492 hypothetical protein LOC55793 isoform 2 [Homo sapiens]   661   0.0  
gi|94158609 hypothetical protein LOC55793 isoform 2 [Homo sapiens]    661   0.0  
gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]    427   e-120
gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]    424   e-119
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo...    42   0.002
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo...    42   0.002
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    41   0.003
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    41   0.003
gi|115430209 phosphatase and actin regulator 4 isoform 2 [Homo s...    40   0.007
gi|115430211 phosphatase and actin regulator 4 isoform 1 [Homo s...    40   0.007
gi|168823443 RAD54-like 2 [Homo sapiens]                               39   0.015
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         38   0.019
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    38   0.025
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [...    37   0.043
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              37   0.043
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]       36   0.074
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    36   0.074
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    36   0.097
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]    36   0.097
gi|147905620 PR domain containing 9 [Homo sapiens]                     35   0.16 
gi|18426913 drebrin 1 isoform b [Homo sapiens]                         35   0.16 
gi|18426915 drebrin 1 isoform a [Homo sapiens]                         35   0.16 
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]       35   0.16 
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]       35   0.16 
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho...    35   0.22 
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               35   0.22 
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa...    34   0.28 

>gi|253795488 hypothetical protein LOC55793 isoform 3 [Homo sapiens]
          Length = 517

 Score = 1061 bits (2744), Expect = 0.0
 Identities = 517/517 (100%), Positives = 517/517 (100%)

Query: 1   MLLGPPPFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG 60
           MLLGPPPFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG
Sbjct: 1   MLLGPPPFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG 60

Query: 61  KAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPE 120
           KAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPE
Sbjct: 61  KAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPE 120

Query: 121 ASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQS 180
           ASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQS
Sbjct: 121 ASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQS 180

Query: 181 TNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQ 240
           TNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQ
Sbjct: 181 TNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQ 240

Query: 241 NVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRA 300
           NVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRA
Sbjct: 241 NVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRA 300

Query: 301 VGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELS 360
           VGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELS
Sbjct: 301 VGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELS 360

Query: 361 VFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGK 420
           VFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGK
Sbjct: 361 VFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGK 420

Query: 421 GPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQP 480
           GPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQP
Sbjct: 421 GPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQP 480

Query: 481 VRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL 517
           VRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL
Sbjct: 481 VRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL 517


>gi|31377841 hypothetical protein LOC55793 isoform 1 [Homo sapiens]
          Length = 469

 Score =  961 bits (2483), Expect = 0.0
 Identities = 469/469 (100%), Positives = 469/469 (100%)

Query: 49  MEYHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPS 108
           MEYHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPS
Sbjct: 1   MEYHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPS 60

Query: 109 QCGDNLESPLPEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIP 168
           QCGDNLESPLPEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIP
Sbjct: 61  QCGDNLESPLPEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIP 120

Query: 169 WKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQ 228
           WKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQ
Sbjct: 121 WKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQ 180

Query: 229 EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGW 288
           EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGW
Sbjct: 181 EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGW 240

Query: 289 LVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLC 348
           LVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLC
Sbjct: 241 LVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLC 300

Query: 349 ELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFC 408
           ELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFC
Sbjct: 301 ELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFC 360

Query: 409 DSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQ 468
           DSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQ
Sbjct: 361 DSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQ 420

Query: 469 QEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL 517
           QEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL
Sbjct: 421 QEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL 469


>gi|253795490 hypothetical protein LOC55793 isoform 4 [Homo sapiens]
          Length = 374

 Score =  764 bits (1974), Expect = 0.0
 Identities = 374/374 (100%), Positives = 374/374 (100%)

Query: 144 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 203
           MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP
Sbjct: 1   MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLP 60

Query: 204 PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 263
           PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT
Sbjct: 61  PQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFT 120

Query: 264 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 323
           GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN
Sbjct: 121 GVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTN 180

Query: 324 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 383
           LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT
Sbjct: 181 LVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVT 240

Query: 384 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 443
           DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI
Sbjct: 241 DQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLI 300

Query: 444 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 503
           ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE
Sbjct: 301 ALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGE 360

Query: 504 RRQRPKHESDCILL 517
           RRQRPKHESDCILL
Sbjct: 361 RRQRPKHESDCILL 374


>gi|253795492 hypothetical protein LOC55793 isoform 2 [Homo sapiens]
          Length = 327

 Score =  661 bits (1705), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 191 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 250
           MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP
Sbjct: 1   MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 60

Query: 251 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 310
           KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV
Sbjct: 61  KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 120

Query: 311 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 370
           ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST
Sbjct: 121 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 180

Query: 371 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 430
           MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS
Sbjct: 181 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 240

Query: 431 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 490
           PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL
Sbjct: 241 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 300

Query: 491 QGRGATSGRPAGERRQRPKHESDCILL 517
           QGRGATSGRPAGERRQRPKHESDCILL
Sbjct: 301 QGRGATSGRPAGERRQRPKHESDCILL 327


>gi|94158609 hypothetical protein LOC55793 isoform 2 [Homo sapiens]
          Length = 327

 Score =  661 bits (1705), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 191 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 250
           MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP
Sbjct: 1   MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP 60

Query: 251 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 310
           KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV
Sbjct: 61  KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV 120

Query: 311 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 370
           ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST
Sbjct: 121 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST 180

Query: 371 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 430
           MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS
Sbjct: 181 MTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGS 240

Query: 431 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 490
           PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL
Sbjct: 241 PEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 300

Query: 491 QGRGATSGRPAGERRQRPKHESDCILL 517
           QGRGATSGRPAGERRQRPKHESDCILL
Sbjct: 301 QGRGATSGRPAGERRQRPKHESDCILL 327


>gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]
          Length = 621

 Score =  427 bits (1099), Expect = e-120
 Identities = 222/381 (58%), Positives = 275/381 (72%), Gaps = 26/381 (6%)

Query: 153 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 212
           + R P    Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP  E+IT++
Sbjct: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293

Query: 213 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 272
           +LM +LG+ +L  KP+E SE  +LN++QN+ DAM +L KL TGLDVNVRFTGV  FEYTP
Sbjct: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353

Query: 273 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 332
           EC VFDLL IPLYHGWLVDPQ  + V+AVG  SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413

Query: 333 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 392
           QFL  TA QLTYHGLCELT+  +EGEL VFFRNNHFSTMTK+K  LYLLVTDQGFL EE+
Sbjct: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473

Query: 393 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 451
           VVWESLHNVDGD  FCDS+FHL       P ++  +    +Q Q+DQDYL+ALSLQQ+Q 
Sbjct: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527

Query: 452 ------PRGPLGLTDLELAQQLQQEE-------YQQQQAAQPVRMRTRVLSLQGRGA--- 495
                  + P G++DLELA++LQ+EE       YQ+Q+ A          + QG+ A   
Sbjct: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQQGQPAQAS 587

Query: 496 -TSGRPAG--ERRQRPKHESD 513
            +SGR +G  ER+++   E D
Sbjct: 588 PSSGRQSGNSERKRKEPREKD 608


>gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]
          Length = 620

 Score =  424 bits (1091), Expect = e-119
 Identities = 221/380 (58%), Positives = 272/380 (71%), Gaps = 25/380 (6%)

Query: 153 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 212
           + R P    Y +KWI WK E TPIITQ+ NGPCPLLAI+N+L L WKVKLPP  E+IT++
Sbjct: 234 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAE 293

Query: 213 ELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTP 272
           +LM +LG+ +L  KP+E SE  +LN++QN+ DAM +L KL TGLDVNVRFTGV  FEYTP
Sbjct: 294 QLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTP 353

Query: 273 ECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAE 332
           EC VFDLL IPLYHGWLVDPQ  + V+AVG  SYNQLVE+II+CK S ++ LV+EG +AE
Sbjct: 354 ECIVFDLLDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAE 413

Query: 333 QFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQ 392
           QFL  TA QLTYHGLCELT+  +EGEL VFFRNNHFSTMTK+K  LYLLVTDQGFL EE+
Sbjct: 414 QFLNNTATQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEK 473

Query: 393 VVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSLQQQQ- 451
           VVWESLHNVDGD  FCDS+FHL       P ++  +    +Q Q+DQDYL+ALSLQQ+Q 
Sbjct: 474 VVWESLHNVDGDGNFCDSEFHLR------PPSDPETVYKGQQDQIDQDYLMALSLQQEQQ 527

Query: 452 ------PRGPLGLTDLELAQQLQQEE------YQQQQAAQPVRMRTRVLSLQGRGA---- 495
                  + P G++DLELA++LQ+EE      Y Q+Q              QG+ A    
Sbjct: 528 SQEINWEQIPEGISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASP 587

Query: 496 TSGRPAG--ERRQRPKHESD 513
           +SGR +G  ER+++   E D
Sbjct: 588 SSGRQSGNSERKRKEPREKD 607


>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
            sapiens]
          Length = 1272

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 382  VTDQGFLQE-EQVVWESLHNVDGDSCFCDS-----DFHLSHSLGKGPGAEGGSGSPEKQL 435
            V D+ F+Q  ++++ E+L    G+S            HL   L KGP   GG G  E   
Sbjct: 1108 VEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESA- 1166

Query: 436  QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 490
                D +  + L ++  +    + ++ ++ QL    + QQQA Q  RMR + L+L
Sbjct: 1167 ----DTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTL 1217


>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
            sapiens]
          Length = 1272

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 382  VTDQGFLQE-EQVVWESLHNVDGDSCFCDS-----DFHLSHSLGKGPGAEGGSGSPEKQL 435
            V D+ F+Q  ++++ E+L    G+S            HL   L KGP   GG G  E   
Sbjct: 1108 VEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESA- 1166

Query: 436  QVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSL 490
                D +  + L ++  +    + ++ ++ QL    + QQQA Q  RMR + L+L
Sbjct: 1167 ----DTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTL 1217


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 48/178 (26%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 5   PPPFNESTKPSPSPCHSFASQA-----------WLRQVPEVSKHLQCPSAKSLLTMEYHQ 53
           PPP + +TKP  S  H   S A                P  SK  + PS KS  T+E+  
Sbjct: 659 PPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGS 718

Query: 54  P--EDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDA----DGEAREREPADQALLP 107
           P   DP P   G     +PE    LA P   P    AR A        R R PA +A   
Sbjct: 719 PRTRDPTPRPPG-----LPEEATALAAPS--PPRARARAAPRPLGAHGRRRSPAKRAEAA 771

Query: 108 SQCGDNLESPL-----PEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPD 160
           S    ++          E +    GP     P  +  R+          P T  P P+
Sbjct: 772 SMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPE 829


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 48/178 (26%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 5   PPPFNESTKPSPSPCHSFASQA-----------WLRQVPEVSKHLQCPSAKSLLTMEYHQ 53
           PPP + +TKP  S  H   S A                P  SK  + PS KS  T+E+  
Sbjct: 654 PPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGS 713

Query: 54  P--EDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDA----DGEAREREPADQALLP 107
           P   DP P   G     +PE    LA P   P    AR A        R R PA +A   
Sbjct: 714 PRTRDPTPRPPG-----LPEEATALAAPS--PPRARARAAPRPLGAHGRRRSPAKRAEAA 766

Query: 108 SQCGDNLESPL-----PEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPD 160
           S    ++          E +    GP     P  +  R+          P T  P P+
Sbjct: 767 SMLAADVRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPE 824


>gi|115430209 phosphatase and actin regulator 4 isoform 2 [Homo
           sapiens]
          Length = 712

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 19/193 (9%)

Query: 7   PFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPGKAGTAE 66
           P  +   P P P H  ++       P +++  Q  ++ +LL+    +P  P P K G   
Sbjct: 264 PAKQPPIPPPKPAHRNSN-------PVIAELSQAINSGTLLS----KPSPPLPPKRGIPS 312

Query: 67  AVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPEASSAPP 126
             +P      A   + P D   +       E  P      PS        P P  +   P
Sbjct: 313 TSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEPPRTPPFP 372

Query: 127 GPTLGTLPEVETIRACSMPQELPQSPRTRQPEP-----DFYCVKWIPWKGEQTPI---IT 178
             T   +PE+E   +  + QE+PQ    ++  P       +    IP +    P+   I 
Sbjct: 373 AKTFQVVPEIEFPPSLDLHQEIPQQEDQKKEVPKRILDQNFGEPHIPSRLPPLPLHIRIQ 432

Query: 179 QSTNGPCPLLAIM 191
           Q+   P P+  I+
Sbjct: 433 QALTSPLPMTPIL 445


>gi|115430211 phosphatase and actin regulator 4 isoform 1 [Homo
           sapiens]
          Length = 702

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 19/193 (9%)

Query: 7   PFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPGKAGTAE 66
           P  +   P P P H  ++       P +++  Q  ++ +LL+    +P  P P K G   
Sbjct: 254 PAKQPPIPPPKPAHRNSN-------PVIAELSQAINSGTLLS----KPSPPLPPKRGIPS 302

Query: 67  AVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPEASSAPP 126
             +P      A   + P D   +       E  P      PS        P P  +   P
Sbjct: 303 TSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEPPRTPPFP 362

Query: 127 GPTLGTLPEVETIRACSMPQELPQSPRTRQPEP-----DFYCVKWIPWKGEQTPI---IT 178
             T   +PE+E   +  + QE+PQ    ++  P       +    IP +    P+   I 
Sbjct: 363 AKTFQVVPEIEFPPSLDLHQEIPQQEDQKKEVPKRILDQNFGEPHIPSRLPPLPLHIRIQ 422

Query: 179 QSTNGPCPLLAIM 191
           Q+   P P+  I+
Sbjct: 423 QALTSPLPMTPIL 435


>gi|168823443 RAD54-like 2 [Homo sapiens]
          Length = 1467

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 39   QCPSAKSLLTMEYHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEARER 98
            Q PS +S     +      AP   G A  V P++ E+++   ++     AR    E+R+ 
Sbjct: 1139 QGPSCESTSNGRHSASSPKAPDPEGLARPVSPDSPEIISELQQYADVAAAR----ESRQS 1194

Query: 99   EPADQALLPSQCGDNLESPLPEASSAPPGPTLGTLPEV 136
             P+  A LP      ++S      SA PG  LGT P +
Sbjct: 1195 SPSTNAALPGPPAQLMDS------SAVPGTALGTEPRL 1226


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 43/163 (26%), Positives = 58/163 (35%), Gaps = 32/163 (19%)

Query: 5   PPPFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPED------PA 58
           P P + S+ PSPSP  S  S       P        P A      +   P D      PA
Sbjct: 188 PAPSSASSSPSPSPSSSSPSPP----PPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPA 243

Query: 59  PGKAGTAEAVIPENHEVLAG---PDEHPQDTDARDADGEAREREPA-------------- 101
           P +          N    AG   P+E  ++ +  + + E  E E                
Sbjct: 244 PEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAG 303

Query: 102 ---DQALLPSQCGDNLESPLPEASSAPPGPTLGTLPEVETIRA 141
              D +L     GD  ESP P+A    P P  GT P+V++ RA
Sbjct: 304 IYDDNSLSQDFPGD--ESPRPDAQPTQPTPAPGTPPQVDSTRA 344


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 422  PGAEGGSGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQ-QAAQP 480
            PGA G  G P +Q+ + Q  +++     QQ +G +G   +   QQ QQ+++QQQ   A  
Sbjct: 3815 PGALGPQG-PHRQVLMTQSRVLSSPQLAQQGQGLMGHRLVTAQQQQQQQQHQQQGSMAGL 3873

Query: 481  VRMRTRVLSLQGRGATSGRPAGERRQ 506
              ++  ++S  G+   S +P G  +Q
Sbjct: 3874 SHLQQSLMSHSGQPKLSAQPMGSLQQ 3899



 Score = 37.0 bits (84), Expect = 0.043
 Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 3   LGPPPFNESTKPSPSPCHSFASQAWLRQVP-EVSKHLQCPSAKSLLTMEYHQPEDPAPGK 61
           L PPP    T P P           L   P   + HL  P  +S L+     PE+     
Sbjct: 449 LSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPP---PEESPLSP 505

Query: 62  AGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPA-DQALLPSQCGDNLESPLPE 120
              +    P     L+ P+E P                PA +  L P      L  P  E
Sbjct: 506 PPESSPFSPLEESPLSPPEESPPS--------------PALETPLSPPPEASPLSPPFEE 551

Query: 121 ASSAPPGPTLGTLPEVETIRACSMPQELPQSP 152
           +  +PP   L T P  E  R    P+E P SP
Sbjct: 552 SPLSPPPEELPTSPPPEASRLSPPPEESPMSP 583



 Score = 37.0 bits (84), Expect = 0.043
 Identities = 37/152 (24%), Positives = 52/152 (34%), Gaps = 7/152 (4%)

Query: 3   LGPPPFNESTKPSP--SPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG 60
           L PPP    T P P  S       ++ +   PE S     P A  L       P  P P 
Sbjct: 554 LSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPE 613

Query: 61  KAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPE 120
           ++  +    PE   +   P++ P      ++        P    L P      L  P  E
Sbjct: 614 ESPLSPP--PEASRLSPPPEDSPMSPPPEESP---MSPPPEVSRLSPLPVVSRLSPPPEE 668

Query: 121 ASSAPPGPTLGTLPEVETIRACSMPQELPQSP 152
           +  +PP     T P  E  R    P++ P SP
Sbjct: 669 SPLSPPPEESPTSPPPEASRLSPPPEDSPTSP 700



 Score = 36.6 bits (83), Expect = 0.057
 Identities = 52/232 (22%), Positives = 75/232 (32%), Gaps = 50/232 (21%)

Query: 3   LGPPPFNESTKPSP--SPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG 60
           L PPP      P P  SP      ++ +   PEVS+    P    L       P  P P 
Sbjct: 617 LSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPE 676

Query: 61  KAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEARERE---------------PADQAL 105
           ++ T+    PE   +   P++ P      D+       +               P +  L
Sbjct: 677 ESPTSPP--PEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQL 734

Query: 106 LPSQCGDNLE--------SPLPEA------------SSAPPGPTLGTLPE-------VET 138
            P   G +L         SP PE             S  P  P L  +PE        E 
Sbjct: 735 CPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVPEEPHLSPQAEG 794

Query: 139 IRACSMPQELPQSPRTRQPE----PDFYCVKWIPWKGEQTPIITQSTNGPCP 186
                 P+EL  SP+T +P     P+  C+   P +   +P   +    P P
Sbjct: 795 PHLSPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEESHLSPQSEEPCLSPRP 846



 Score = 34.7 bits (78), Expect = 0.22
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 3   LGPPPFNESTKPSPSPCHSFA--SQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG 60
           + PPP      P P     F    ++ L   PE S     P A  L       P  P P 
Sbjct: 581 MSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPE 640

Query: 61  KAGTAEAVIPENHEVLAGP-----DEHPQDTDARDADGEAREREPADQALLPSQCGDNLE 115
           ++  +    PE   +   P        P+++       E+    P + + L     D+  
Sbjct: 641 ESPMSPP--PEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPT 698

Query: 116 SPLPEAS--SAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQP 157
           SP PE S  S PP  +L +LP +E      +P+E    PR+  P
Sbjct: 699 SPPPEDSPASPPPEDSLMSLP-LEESPLLPLPEEPQLCPRSEGP 741



 Score = 34.7 bits (78), Expect = 0.22
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 413  HLSHSLGKGPGAEGGSGSPE---KQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQ 469
            HL  SL    G    S  P    +QLQ  Q       LQQQQ +       L+  QQLQQ
Sbjct: 3875 HLQQSLMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQLQQQQQQ------QLQQQQQLQQ 3928

Query: 470  EEYQQQQAAQPVRMR 484
            ++ QQQQ  Q ++ +
Sbjct: 3929 QQLQQQQQQQQLQQQ 3943



 Score = 30.0 bits (66), Expect = 5.3
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 416  HSLGKGP--GAEGG---SGSPEKQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQE 470
            HS G G   G  GG        + L  D   L    LQ QQ R       ++LAQ+LQQ+
Sbjct: 3685 HSGGAGSLAGPSGGFFPGNLALRSLGPDSRLLQERQLQLQQQR-------MQLAQKLQQQ 3737

Query: 471  EYQQQQAAQPV-RMRTRVLSLQGRGATSGRPAGERRQ 506
            + QQQQ    + ++  +    QG G  + +  G + Q
Sbjct: 3738 QQQQQQQQHLLGQVAIQQQQQQGPGVQTNQALGPKPQ 3774


>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
            sapiens]
          Length = 1636

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 41/147 (27%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 3    LGPPPFNESTKPSPSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG-- 60
            +GP P      P P P  +F  Q   + +P    HL  P A  LL  +   P  P PG  
Sbjct: 951  IGPQP---QPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVL 1007

Query: 61   -----------KAGTAEAVIPENHEVL----AGPDEHPQDTDARDADGEAREREPADQAL 105
                         G A+  +P +   L     GP + P    A       R   P    L
Sbjct: 1008 GQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPL 1067

Query: 106  L---PSQCGDNLESPLPEASSAP-PGP 128
                PS  G +  SP    S AP PGP
Sbjct: 1068 TIRGPSSAGQSTPSPHLVPSPAPSPGP 1094


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 56   DPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLE 115
            D  PG++  AE +     E  A P+   +  +A +A+G+A+E E   Q        +++E
Sbjct: 1823 DQDPGQSDGAEGIEAPEAEGEAQPES--EGVEAPEAEGDAQEAEGEAQPE-----SEDVE 1875

Query: 116  SPLPEASSAPPGPTLGTLPEVE-TIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQT 174
            +P  E  + P    + T PE E  ++  S   E P++ +  QPE +   V+ +  +GE  
Sbjct: 1876 APEAEGEAQPESEDVET-PEAEWEVQPESEGAEAPEAEKEAQPETE--SVEALETEGEDE 1932

Query: 175  P 175
            P
Sbjct: 1933 P 1933



 Score = 30.4 bits (67), Expect = 4.1
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 53   QPE-DPAPGKAGTAEAVIPENHEVLAGPDEHPQ--DTDARDADGEAR---EREPADQALL 106
            QPE D         EA   E     A  + HP+  D DA++A+GEA+   E   A +A  
Sbjct: 2049 QPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEG 2108

Query: 107  PSQCGDNLESPLPEASSAPPGPTLGTLPEVE 137
             +Q  + +E+P  E  + P    +   PE E
Sbjct: 2109 EAQKAEGIEAPETEGEAQPESEGI-EAPEAE 2138


>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
          Length = 1374

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 58  APGKAGTAEAVIPENHEVLAGPDEHPQDTD--ARDADGEAREREPADQALLPSQCGDNL- 114
           A G A     V P   E  +   +HPQ     A +A+G    R P      PSQ G  L 
Sbjct: 751 AQGLAPAPCLVTPSWTETASSGGDHPQAEPKLATEAEGTTGPRLPLPSVPSPSQEGAPLP 810

Query: 115 --ESPLPEASSA-PPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPD 160
             E+  P+A  A P  PT  T  EV  I+  S       SP    P  +
Sbjct: 811 SEEASAPDAPDALPDSPTPATGGEVSAIKLASALNGSSSSPEVEAPSSE 859


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 79  PDEHPQDTDARDADGEAREREP-----ADQALLPSQCGDNLESPLPEASS------APPG 127
           P   P+  +  +A G AR   P     A     P      L  PLP +S       +PPG
Sbjct: 146 PPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPG 205

Query: 128 P-TLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCP 186
           P T G LP V     C+ P   P  P T  P P    +     K +  P+       P P
Sbjct: 206 PLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLP 265

Query: 187 LL 188
           LL
Sbjct: 266 LL 267


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 35.8 bits (81), Expect = 0.097
 Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 3   LGPPPFNESTKPS--PSPCHSFASQAWLRQVPEVSKHLQCPSAKSLLTMEYHQPEDPAPG 60
           +GP P     KP   P P H    Q   +Q P      Q P  +     + HQ + P P 
Sbjct: 47  MGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ----QPPPHQPPPHPQPHQQQQPPPP 102

Query: 61  KAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPE 120
              +++ V+ +      GP   P    A  A   A    P      P        +P P 
Sbjct: 103 PQDSSKPVVAQ------GPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPA 156

Query: 121 ASSAPPGPTLGTLP 134
            +SAPPG    T P
Sbjct: 157 VTSAPPGAPPPTPP 170


>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
          Length = 4861

 Score = 35.8 bits (81), Expect = 0.097
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 89   RDADGEAREREPADQALLPSQCGDNLESPLPEASSAPPGPTLGTLP--EVETIRACSMPQ 146
            ++ D +A E +PA QA  P     +  S     SS+    T  T P  + ET+ A   P 
Sbjct: 2615 QEIDQQAEESDPAQQAQTPVTTSPSASSTTSFMSSSLEDTTTATTPVTDTETVPASESPG 2674

Query: 147  ELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGP 184
             +P S   RQ    +     +P +  QTP I+     P
Sbjct: 2675 VMPLS-LLRQMFSSYPTTTVLPTRRAQTPPISSLPTSP 2711


>gi|147905620 PR domain containing 9 [Homo sapiens]
          Length = 894

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 14  PSPSPCHSFASQAWLRQVPE---VSKHLQCPSAKSLLTMEYHQPEDPAPGKAGTAEAVIP 70
           P PS C +F+SQ +L Q  E    S++   PSA+ LL     QPE+P PG     E   P
Sbjct: 389 PCPSCCLAFSSQKFLSQHVERNHSSQNFPGPSARKLL-----QPENPCPGDQ-NQEQQYP 442

Query: 71  ENH 73
           + H
Sbjct: 443 DPH 445


>gi|18426913 drebrin 1 isoform b [Homo sapiens]
          Length = 651

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 20/109 (18%)

Query: 51  YHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQC 110
           + Q E  A   AG+ +   P NH     P  H  D+  R A      R P+D +   +  
Sbjct: 296 FKQQERVASASAGSCDVPSPFNHR----PGSH-LDSHRRMAPTPIPTRSPSDSSTASTPV 350

Query: 111 GDNLESPLPEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEP 159
            + +E  L E +S+ P P               +P   P +  T++P P
Sbjct: 351 AEQIERALDEVTSSQPPP---------------LPPPPPPAQETQEPSP 384



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 5   PPPFNESTKPSP----SPCHSFASQAW---LRQVPEVSKHLQCPS--AKSLLTME-YHQP 54
           PPP  E+ +PSP        + A QAW   + + P+     + P   A+ L+ ME   Q 
Sbjct: 373 PPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAEDLMFMESAEQA 432

Query: 55  EDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNL 114
              AP +  TA+A      E+    D    DT   D    A    PA  +L+    G+  
Sbjct: 433 VLAAPVEPATADAT-----EIHDAADTIETDTATADTT-VANNVPPAATSLIDLWPGNGE 486

Query: 115 ESPLPEASSAPPGPTLGT 132
            +   +     P P  GT
Sbjct: 487 GASTLQGEPRAPTPPSGT 504


>gi|18426915 drebrin 1 isoform a [Homo sapiens]
          Length = 649

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 20/109 (18%)

Query: 51  YHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQC 110
           + Q E  A   AG+ +   P NH     P  H  D+  R A      R P+D +   +  
Sbjct: 294 FKQQERVASASAGSCDVPSPFNHR----PGSH-LDSHRRMAPTPIPTRSPSDSSTASTPV 348

Query: 111 GDNLESPLPEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEP 159
            + +E  L E +S+ P P               +P   P +  T++P P
Sbjct: 349 AEQIERALDEVTSSQPPP---------------LPPPPPPAQETQEPSP 382



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 5   PPPFNESTKPSP----SPCHSFASQAW---LRQVPEVSKHLQCPS--AKSLLTME-YHQP 54
           PPP  E+ +PSP        + A QAW   + + P+     + P   A+ L+ ME   Q 
Sbjct: 371 PPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAEDLMFMESAEQA 430

Query: 55  EDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNL 114
              AP +  TA+A      E+    D    DT   D    A    PA  +L+    G+  
Sbjct: 431 VLAAPVEPATADAT-----EIHDAADTIETDTATADTT-VANNVPPAATSLIDLWPGNGE 484

Query: 115 ESPLPEASSAPPGPTLGT 132
            +   +     P P  GT
Sbjct: 485 GASTLQGEPRAPTPPSGT 502


>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
          Length = 1120

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 70  PENHEVLAGPDEHPQDTDARDADGEAREREPADQALL-----PSQCGDNLESPLPEASSA 124
           P    V  G D +  ++D      + REREP   ALL      +  G     P P    +
Sbjct: 889 PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPAAPLPSPTPGES 948

Query: 125 PPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEP 159
           PP  +L   PE  ++ A  +P  L  SP  + P P
Sbjct: 949 PPASSL-PQPEPSSLPAQGVPTPLAPSPAMQPPVP 982


>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
          Length = 1202

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 70   PENHEVLAGPDEHPQDTDARDADGEAREREPADQALL-----PSQCGDNLESPLPEASSA 124
            P    V  G D +  ++D      + REREP   ALL      +  G     P P    +
Sbjct: 971  PRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPAAPLPSPTPGES 1030

Query: 125  PPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEP 159
            PP  +L   PE  ++ A  +P  L  SP  + P P
Sbjct: 1031 PPASSL-PQPEPSSLPAQGVPTPLAPSPAMQPPVP 1064


>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
            sapiens]
          Length = 1570

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 52   HQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEA---------REREPAD 102
            HQ      G  G A AV       L+   EH  +T  R + GEA             P  
Sbjct: 1391 HQSVQTEDGTGGMARAVAKA---ALSPVQEH--ETGRRSSSGEAGTPLVPIVVEPARPGA 1445

Query: 103  QALLPSQCGDN---LESPLPEASSAPPGPT---LGTLPEVETIRACSMPQELPQSPRTRQ 156
            +A++P   G +   L+ P P A S P  P       L  VE     S P+  P SP+   
Sbjct: 1446 KAVVPQPLGADSKGLQEPAPLAPSVPEAPRGRERWVLEVVEERTTLSGPRSKPASPKL-S 1504

Query: 157  PEP 159
            PEP
Sbjct: 1505 PEP 1507


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 99   EPADQALLPSQCGDNLESPLPEASSAPPGPTL----GTLPEVETIRACSMPQELPQSPRT 154
            E A+ A     CG    SP P  S++PPGPTL     +L E   +   ++P    +S R 
Sbjct: 974  EKAEAAAGEESCG---ASPTPATSASPPGPTLKARFRSLLETAWLNGLALPTWGHKSSRP 1030

Query: 155  RQPEP 159
             QP P
Sbjct: 1031 DQPSP 1035


>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
           sapiens]
          Length = 443

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 27/146 (18%)

Query: 365 NNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFH----------- 413
           +NH+S +T   S ++      G  Q      E+   V GD     S+ H           
Sbjct: 6   SNHYSLLTSSASIVHA-EPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITA 64

Query: 414 LSHSLGKGPGAEGGSG---------------SPEKQLQVDQDYLIALSLQQQQPRGPLGL 458
           LSH  G G G  GG G               SP  Q  +    ++    +  +  GP  L
Sbjct: 65  LSHGGGGGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGAL 124

Query: 459 TDLELAQQLQQEEYQQQQAAQPVRMR 484
                 QQ QQ++ QQQQ  Q  + R
Sbjct: 125 QQQHQQQQQQQQQQQQQQQQQQQQQR 150


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,370,627
Number of Sequences: 37866
Number of extensions: 1315560
Number of successful extensions: 5347
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 4760
Number of HSP's gapped (non-prelim): 567
length of query: 517
length of database: 18,247,518
effective HSP length: 107
effective length of query: 410
effective length of database: 14,195,856
effective search space: 5820300960
effective search space used: 5820300960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.