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Search of human proteins with 121114296
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|121114296 caudal type homeobox 1 [Homo sapiens]
(265 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|121114296 caudal type homeobox 1 [Homo sapiens] 563 e-161
gi|169636435 caudal type homeobox 2 [Homo sapiens] 215 3e-56
gi|4885127 caudal type homeobox 4 [Homo sapiens] 177 1e-44
gi|24497538 homeobox C4 [Homo sapiens] 109 2e-24
gi|24497540 homeobox C4 [Homo sapiens] 109 2e-24
gi|13273315 homeobox B4 [Homo sapiens] 106 2e-23
gi|23397672 homeobox D4 [Homo sapiens] 100 1e-21
gi|4504465 homeobox B2 [Homo sapiens] 99 5e-21
gi|148613882 homeobox A4 [Homo sapiens] 98 8e-21
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 97 1e-20
gi|24497526 homeobox B1 [Homo sapiens] 97 2e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 96 3e-20
gi|13562112 homeobox A3 isoform a [Homo sapiens] 96 3e-20
gi|19923391 homeobox D3 [Homo sapiens] 95 7e-20
gi|23503237 homeobox B6 [Homo sapiens] 94 9e-20
gi|24497517 homeobox A5 [Homo sapiens] 92 4e-19
gi|4504469 homeobox B5 [Homo sapiens] 92 6e-19
gi|11321638 homeobox C5 [Homo sapiens] 91 1e-18
gi|15029506 homeobox D8 [Homo sapiens] 90 2e-18
gi|10140847 homeobox A2 [Homo sapiens] 90 2e-18
gi|84570137 homeobox B3 [Homo sapiens] 89 3e-18
gi|23097236 homeobox A9 [Homo sapiens] 87 1e-17
gi|13489077 homeobox A6 [Homo sapiens] 86 4e-17
gi|23510368 homeobox D11 [Homo sapiens] 85 7e-17
gi|13375632 homeobox D1 [Homo sapiens] 84 1e-16
gi|85068580 homeobox B7 [Homo sapiens] 83 3e-16
gi|24497547 homeobox C9 [Homo sapiens] 82 6e-16
gi|182765442 homeobox A10 isoform a [Homo sapiens] 80 1e-15
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 80 1e-15
gi|24497533 homeobox C10 [Homo sapiens] 80 1e-15
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 563 bits (1451), Expect = e-161
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA 60
MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA
Sbjct: 1 MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA 60
Query: 61 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG 120
WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG
Sbjct: 61 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG 120
Query: 121 TPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 180
TPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT
Sbjct: 121 TPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 180
Query: 181 IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL 240
IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL
Sbjct: 181 IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL 240
Query: 241 GGLCPSNTSLLATSSPMPVKEEFLP 265
GGLCPSNTSLLATSSPMPVKEEFLP
Sbjct: 241 GGLCPSNTSLLATSSPMPVKEEFLP 265
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 215 bits (548), Expect = 3e-56
Identities = 133/269 (49%), Positives = 158/269 (58%), Gaps = 51/269 (18%)
Query: 1 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH 50
MYV Y+LDKD +YP R + L L PQ + +PPQYPD+ Y ++
Sbjct: 1 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN 54
Query: 51 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAASP-----------ASLAFGPPPDF 98
++ A +P +W A + AP ++DW Y PG AA AA+ A++ + P D+
Sbjct: 55 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY 113
Query: 99 SPVPAP----------PGPGPGLLAQPLGGPGTPS--------SPGAQRPTPYEWMRRSV 140
P P P GLL GP P+ SPG QR EWMR+
Sbjct: 114 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP- 172
Query: 141 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI 200
A G KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK+ELAA LGL+ERQVKI
Sbjct: 173 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI 232
Query: 201 WFQNRRAKERKVNKKK---QQQQQPPQPP 226
WFQNRRAKERK+NKKK QQQQQPPQPP
Sbjct: 233 WFQNRRAKERKINKKKLQQQQQQQPPQPP 261
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 28 QAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASP 87
Q PP PPP PPQ P +P P P + P P A PG P
Sbjct: 253 QQQQPPQPPPPPPQPP--------QPQPGPLRS--VPEPLSPVSSLQASVPGSVPGVLGP 302
Query: 88 ASLAFGP 94
P
Sbjct: 303 TGGVLNP 309
>gi|4885127 caudal type homeobox 4 [Homo sapiens]
Length = 284
Score = 177 bits (448), Expect = 1e-44
Identities = 106/243 (43%), Positives = 134/243 (55%), Gaps = 29/243 (11%)
Query: 1 MYVGYVLDKDSPVYPG----PARPASLGLGPQAYGPPAPPP----APPQYPDFSSYSHV- 51
MY +L+K++ +YPG P + G G G P A P + + Y H+
Sbjct: 1 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMP 60
Query: 52 --EPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPA-------ASPASLAFGPPPDFSPV- 101
+P WG+P+ P++DW+ GP +SPA+ + PV
Sbjct: 61 SMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVG 120
Query: 102 -----PAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDK 156
+ PG G L G SSP R +PY WMR++V +GKTRTK+K
Sbjct: 121 GGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQV-----TGKTRTKEK 175
Query: 157 YRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK 216
YRVVYTDHQRLELEKEFH +RYITI+RKSELA NLGL+ERQVKIWFQNRRAKERK+ KKK
Sbjct: 176 YRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKK 235
Query: 217 QQQ 219
Q
Sbjct: 236 ISQ 238
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 109 bits (273), Expect = 2e-24
Identities = 81/236 (34%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 7 LDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFP 66
+ + SP Y G R + Q PP PP P YP+ YS P + G
Sbjct: 29 IPEHSPEYYGRTRESGFQHHHQELYPPPPPR--PSYPE-RQYSCTS-LQGPGNSRG---- 80
Query: 67 APKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPG 126
+GP A S + P S A P P P +QP P PSS
Sbjct: 81 ---------HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP--APDHPSSAA 129
Query: 127 AQRPTPYEWMRR----SVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIR 182
+++P Y WM++ +V GG K + R YT Q LELEKEFHY+RY+T R
Sbjct: 130 SKQPIVYPWMKKIHVSTVNPNYNGGEPK-----RSRTAYTRQQVLELEKEFHYNRYLTRR 184
Query: 183 RKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGP 238
R+ E+A +L L+ERQ+KIWFQNRR K +K ++ + + P A T + A P
Sbjct: 185 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 109 bits (273), Expect = 2e-24
Identities = 81/236 (34%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 7 LDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFP 66
+ + SP Y G R + Q PP PP P YP+ YS P + G
Sbjct: 29 IPEHSPEYYGRTRESGFQHHHQELYPPPPPR--PSYPE-RQYSCTS-LQGPGNSRG---- 80
Query: 67 APKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPG 126
+GP A S + P S A P P P +QP P PSS
Sbjct: 81 ---------HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP--APDHPSSAA 129
Query: 127 AQRPTPYEWMRR----SVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIR 182
+++P Y WM++ +V GG K + R YT Q LELEKEFHY+RY+T R
Sbjct: 130 SKQPIVYPWMKKIHVSTVNPNYNGGEPK-----RSRTAYTRQQVLELEKEFHYNRYLTRR 184
Query: 183 RKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGP 238
R+ E+A +L L+ERQ+KIWFQNRR K +K ++ + + P A T + A P
Sbjct: 185 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 106 bits (265), Expect = 2e-23
Identities = 76/188 (40%), Positives = 92/188 (48%), Gaps = 41/188 (21%)
Query: 31 GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90
GPP PPP PP P S APAPP A GA P P G A ++SP
Sbjct: 72 GPPPPPPPPPPPPPPPGLS--PRAPAPPPA-GALLPEP--------GQRCEAVSSSP--- 117
Query: 91 AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR----SVAAGGGG 146
PPP + P P +PS + P Y WMR+ +V G
Sbjct: 118 ---PPPPCAQNPLHP---------------SPSHSACKEPVVYPWMRKVHVSTVNPNYAG 159
Query: 147 GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRR 206
G K + R YT Q LELEKEFHY+RY+T RR+ E+A L L+ERQ+KIWFQNRR
Sbjct: 160 GEPK-----RSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRR 214
Query: 207 AKERKVNK 214
K +K +K
Sbjct: 215 MKWKKDHK 222
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 100 bits (249), Expect = 1e-21
Identities = 76/195 (38%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 26 GPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAA 85
G A G PP PDF P P G+ PA +G P P
Sbjct: 38 GGGAQGADFQPPGLYPRPDFGEQPFGGSGPGP----GSALPA------RGHGQEPGGPGG 87
Query: 86 SPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGA--QRPTPYEWMRR----S 139
A A G P P P PP P PG A P P S A Q Y WM++ S
Sbjct: 88 HYA--APGEPCPAPPAP-PPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNS 144
Query: 140 VAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVK 199
V GG K + R YT Q LELEKEFH++RY+T RR+ E+A L L+ERQ+K
Sbjct: 145 VNPNYTGGEPK-----RSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIK 199
Query: 200 IWFQNRRAKERKVNK 214
IWFQNRR K +K +K
Sbjct: 200 IWFQNRRMKWKKDHK 214
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 98.6 bits (244), Expect = 5e-21
Identities = 77/221 (34%), Positives = 97/221 (43%), Gaps = 71/221 (32%)
Query: 31 GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90
GP PPP PP P PA P PAP+ W A P+
Sbjct: 75 GPALPPPPPP------------PLPAAP-------PAPEFPWMKE-----KKSAKKPSQS 110
Query: 91 AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGGGSGK 150
A P P S VPA + P G G P + GGGG+ +
Sbjct: 111 ATSPSPAASAVPASG------VGSPADGLGLPEA-------------------GGGGARR 145
Query: 151 TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKER 210
RT YT+ Q LELEKEFH+++Y+ R+ E+AA L LTERQVK+WFQNRR K
Sbjct: 146 LRT------AYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK-- 197
Query: 211 KVNKKKQQQQQPPQ-----PPMAHDI-------TATPAGPS 239
+K++ Q ++PP P DI A+P GPS
Sbjct: 198 --HKRQTQHREPPDGEPACPGALEDICDPAEEPAASPGGPS 236
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 97.8 bits (242), Expect = 8e-21
Identities = 94/292 (32%), Positives = 113/292 (38%), Gaps = 83/292 (28%)
Query: 24 GLGPQAYGPPAPPPA--PPQYPDFSSYSHVEPAPAPPTAWGAPFPA--PKDDWAAAYGPG 79
G GP PPAPP P Q P H P ++ AP A P AA Y
Sbjct: 37 GGGPGYQQPPAPPTQHLPLQQPQLP---HAGGGREPTASYYAPRTAREPAYPAAALYPAH 93
Query: 80 PAAPAASPASLAFGPPPDFSPVPAPP-----GPGPGLLA------------QPLGGP--- 119
AA A P G P P P P GP GL A QP P
Sbjct: 94 GAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAA 153
Query: 120 -----GTPSSPGA-----------------------QRPTPYEWMRR----SVAAGGGGG 147
P++PG + P Y WM++ +V GG
Sbjct: 154 PRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGG 213
Query: 148 SGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRA 207
K + R YT Q LELEKEFH++RY+T RR+ E+A L L+ERQVKIWFQNRR
Sbjct: 214 EPK-----RSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM 268
Query: 208 KERKVNK-------------------KKQQQQQPPQPPMAHDITATPAGPSL 240
K +K +K K Q Q P P H T+TP S+
Sbjct: 269 KWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI 320
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 97.1 bits (240), Expect = 1e-20
Identities = 80/257 (31%), Positives = 109/257 (42%), Gaps = 45/257 (17%)
Query: 20 PASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPG 79
PA L +G Q PP PP +P + +E +PP P DD A A+
Sbjct: 33 PACLYMGRQ-------PPPPPPHPFPGALGALEQG-SPPDISPYEVPPLADDPAVAH--- 81
Query: 80 PAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRS 139
PA LA PP P P G PG+L +P + P+ WM+ +
Sbjct: 82 --LHHHLPAQLALPHPP---AGPFPEGAEPGVLEEP-----------NRVQLPFPWMKST 125
Query: 140 VAAG------GGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGL 193
A GG + + + R YT Q LELEKEF +++YI+ R+ ELA L L
Sbjct: 126 KAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNL 185
Query: 194 TERQVKIWFQNRRAKERKVNKKKQ------------QQQQPPQPPMAHDITATPAGPSLG 241
TER +KIWFQNRR K +K KK+ + +Q ++ A P P G
Sbjct: 186 TERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPG 245
Query: 242 GLCPSNTSLLATSSPMP 258
G P + A +P
Sbjct: 246 GAVPPAAPVAAREGRLP 262
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 96.7 bits (239), Expect = 2e-20
Identities = 75/229 (32%), Positives = 107/229 (46%), Gaps = 34/229 (14%)
Query: 14 YPGPARPASLGL-----GPQAYGPPAPPPA--PPQYPDFSSYSHVEPAPAPPTAWGAPFP 66
YP P++LG+ P Y P A P+ P QY S + P+++GA
Sbjct: 63 YPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQ-SEGDGGYFHPSSYGAQLG 121
Query: 67 APKDDWAAA-YGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSP 125
D + A GPGP P P +G S PA LL++ P PS P
Sbjct: 122 GLSDGYGAGGAGPGPYPPQHPP----YGNEQTASFAPAYAD----LLSEDKETP-CPSEP 172
Query: 126 GAQRPTPYEWMR--------RSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSR 177
++WM+ V+ G G RT +T Q ELEKEFH+++
Sbjct: 173 NTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTN------FTTRQLTELEKEFHFNK 226
Query: 178 YITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPP 226
Y++ R+ E+AA L L E QVKIWFQNRR K++K +++++ + PP PP
Sbjct: 227 YLSRARRVEIAATLELNETQVKIWFQNRRMKQKK--REREEGRVPPAPP 273
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 95.9 bits (237), Expect = 3e-20
Identities = 76/208 (36%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 34 APPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFG 93
APP PP S EP PP AP PAP+ A P P PAA P +
Sbjct: 77 APPSQPP--------SLGEPPLHPPPPQAAP-PAPQPPQPAPQPPAPT-PAAPPPPSSAS 126
Query: 94 PPPDFS--PVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVA---AGGGGGS 148
PP + S P PA P L + + P +++ T + S AG
Sbjct: 127 PPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPP 186
Query: 149 GKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAK 208
G+ +K + R YT Q +ELEKEFH++RY+ R+ E+A L LTERQ+KIWFQNRR K
Sbjct: 187 GQASSK-RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 245
Query: 209 ERKVNKKK--------QQQQQPPQPPMA 228
+K K K Q + P PP A
Sbjct: 246 YKKDQKGKGMLTSSGGQSPSRSPVPPGA 273
Score = 28.9 bits (63), Expect = 4.8
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 33 PAPPPAPPQYPDF--SSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90
P+ P PP + S +S V P P + PF P YG PA+ AS S
Sbjct: 264 PSRSPVPPGAGGYLNSMHSLVNSVPYEPQS-PPPFSKPPQ---GTYGLPPASYPASLPSC 319
Query: 91 AFGPPPDFSPVPAPPGPG 108
A PPP A G G
Sbjct: 320 APPPPPQKRYTAAGAGAG 337
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 95.9 bits (237), Expect = 3e-20
Identities = 76/208 (36%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 34 APPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFG 93
APP PP S EP PP AP PAP+ A P P PAA P +
Sbjct: 77 APPSQPP--------SLGEPPLHPPPPQAAP-PAPQPPQPAPQPPAPT-PAAPPPPSSAS 126
Query: 94 PPPDFS--PVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVA---AGGGGGS 148
PP + S P PA P L + + P +++ T + S AG
Sbjct: 127 PPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPP 186
Query: 149 GKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAK 208
G+ +K + R YT Q +ELEKEFH++RY+ R+ E+A L LTERQ+KIWFQNRR K
Sbjct: 187 GQASSK-RARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 245
Query: 209 ERKVNKKK--------QQQQQPPQPPMA 228
+K K K Q + P PP A
Sbjct: 246 YKKDQKGKGMLTSSGGQSPSRSPVPPGA 273
Score = 28.9 bits (63), Expect = 4.8
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 33 PAPPPAPPQYPDF--SSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASL 90
P+ P PP + S +S V P P + PF P YG PA+ AS S
Sbjct: 264 PSRSPVPPGAGGYLNSMHSLVNSVPYEPQS-PPPFSKPPQ---GTYGLPPASYPASLPSC 319
Query: 91 AFGPPPDFSPVPAPPGPG 108
A PPP A G G
Sbjct: 320 APPPPPQKRYTAAGAGAG 337
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 94.7 bits (234), Expect = 7e-20
Identities = 67/202 (33%), Positives = 90/202 (44%), Gaps = 41/202 (20%)
Query: 94 PPPDFSPVPAPPGPGPGLLAQ-PLGGPGTPSSPGAQRPTPYEWMRRS---------VAAG 143
PPP P +P PG G+ A+ P GGP SS + WM+ S A
Sbjct: 121 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA 180
Query: 144 GGGGSGKTR---TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI 200
G K+ + R YT Q +ELEKEFH++RY+ R+ E+A L LTERQ+KI
Sbjct: 181 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 240
Query: 201 WFQNRRAKERKVNKKK-------------------------QQQQQPPQPPMAHDITATP 235
WFQNRR K +K K K Q PP P +A+D P
Sbjct: 241 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYD---AP 297
Query: 236 AGPSLGGLCPSNTSLLATSSPM 257
+ P+ P+ L A ++P+
Sbjct: 298 SPPAFAKSQPNMYGLAAYTAPL 319
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 94.4 bits (233), Expect = 9e-20
Identities = 74/185 (40%), Positives = 91/185 (49%), Gaps = 21/185 (11%)
Query: 33 PAP-PPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLA 91
PAP P P Q F++ S+ PP G AP D YGP PA ++ A
Sbjct: 40 PAPYGPGPGQDKGFATSSYY-----PPAGGGYGRAAPCD-----YGPAPAFYREKESACA 89
Query: 92 FGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR--SVAAGGGGGSG 149
D P P P P AQ G P Y WM+R S + G SG
Sbjct: 90 LSGA-DEQP-PFHPEPRKSDCAQDKSVFGETEEQKCSTPV-YPWMQRMNSCNSSSFGPSG 146
Query: 150 KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKE 209
+ + R YT +Q LELEKEFHY+RY+T RR+ E+A L LTERQ+KIWFQNRR K
Sbjct: 147 R-----RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 201
Query: 210 RKVNK 214
+K +K
Sbjct: 202 KKESK 206
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 92.4 bits (228), Expect = 4e-19
Identities = 75/214 (35%), Positives = 98/214 (45%), Gaps = 44/214 (20%)
Query: 11 SPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKD 70
+P P ++PA+ PQ P P P P S SH + + GA A
Sbjct: 80 APAEPRYSQPATSTHSPQ----PDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGST 135
Query: 71 DWAAAYGPGPA------APAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSS 124
++ G G A APA+S + A P PAPP
Sbjct: 136 HISSREGVGTASGAEEDAPASSEQASA-----QSEPSPAPPA------------------ 172
Query: 125 PGAQRPTPYEWMRRSVAAGG--GGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIR 182
+P Y WMR+ + GG GK + R YT +Q LELEKEFH++RY+T R
Sbjct: 173 ----QPQIYPWMRKLHISHDNIGGPEGK-----RARTAYTRYQTLELEKEFHFNRYLTRR 223
Query: 183 RKSELAANLGLTERQVKIWFQNRRAKERKVNKKK 216
R+ E+A L L+ERQ+KIWFQNRR K +K NK K
Sbjct: 224 RRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 91.7 bits (226), Expect = 6e-19
Identities = 71/189 (37%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 37 PAPPQYPDF----SSYSHVEPAPAPPT---AWGA-PFPAPKDDWAAAYGPGPAAPAASPA 88
PAP Q P F SS S P P T + GA P + D A + A
Sbjct: 77 PAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEA 136
Query: 89 SLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR-SVAAGGGGG 147
S + P S + +P AQP + ++P Q P + WMR+ ++ G
Sbjct: 137 SASSEPEEAASQLSSPSLAR----AQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGP 192
Query: 148 SGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRA 207
GK + R YT +Q LELEKEFH++RY+T RR+ E+A L L+ERQ+KIWFQNRR
Sbjct: 193 DGK-----RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRM 247
Query: 208 KERKVNKKK 216
K +K NK K
Sbjct: 248 KWKKDNKLK 256
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 90.9 bits (224), Expect = 1e-18
Identities = 69/193 (35%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 35 PPPAPPQY---PDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPG-----PAAPAAS 86
PPPAP D ++ P +A AP AP D AA PG A PA
Sbjct: 50 PPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALE 109
Query: 87 PASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGG 146
+ + G + A G GL P +P P Y WM + +
Sbjct: 110 ERAKSSG---EIKEEQAQTGQPAGL--------SQPPAP----PQIYPWMTKLHMSHETD 154
Query: 147 GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRR 206
G + R YT +Q LELEKEFH++RY+T RR+ E+A NL L ERQ+KIWFQNRR
Sbjct: 155 GK-------RSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRR 207
Query: 207 AKERKVNKKKQQQ 219
K +K +K K ++
Sbjct: 208 MKWKKDSKMKSKE 220
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 90.1 bits (222), Expect = 2e-18
Identities = 78/236 (33%), Positives = 98/236 (41%), Gaps = 59/236 (25%)
Query: 19 RPASLGLGPQAYGPPAP--PPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAY 76
R A+ Q YG A P APPQ +H P P+PP + G + +
Sbjct: 43 RHAAAAAALQLYGNSAAGFPHAPPQ-------AHAHPHPSPPPS-GTGCGGREGRGQEYF 94
Query: 77 GPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLL------------------------ 112
PG +PAA A A PPP P P PP P G+
Sbjct: 95 HPGGGSPAA--AYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQ 152
Query: 113 -AQPLGGPGTPSSPGAQRPTP------------YEWMRRSVAAGGGGGSGKTRTKDKYRV 159
A+ + P SS G P + WMR A G G R
Sbjct: 153 EAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRG----------RQ 202
Query: 160 VYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK 215
Y+ Q LELEKEF ++ Y+T +R+ E++ L LTERQVKIWFQNRR K +K N K
Sbjct: 203 TYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNK 258
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 89.7 bits (221), Expect = 2e-18
Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 46/166 (27%)
Query: 94 PPPDFSPVPA-PPGPGPGLLA------QPLGGPGTPSSPGAQRPTPYEWMRRSVAA---- 142
PPP +P+ PG P A P G G+P GA +P Y WM+ AA
Sbjct: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTA 108
Query: 143 -----------------------------GGGGGSGKTRTKDKYRVVYTDHQRLELEKEF 173
G GGGS + RT YT+ Q LELEKEF
Sbjct: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRT------AYTNTQLLELEKEF 162
Query: 174 HYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQ 219
H+++Y+ R+ E+AA L LTERQVK+WFQNRR K ++ + K+ Q
Sbjct: 163 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 89.4 bits (220), Expect = 3e-18
Identities = 87/290 (30%), Positives = 114/290 (39%), Gaps = 76/290 (26%)
Query: 39 PPQYPDFSSYSHVE------PAPAPPTAWGAPFPAPKDDWAAAYGPG--PAAPAASPASL 90
PPQ P F + +H+E AP K+ + PG P +A P S
Sbjct: 32 PPQ-PPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGS- 89
Query: 91 AFGPPPDFSPVPAPP----GPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRS------- 139
PPP +P A G GP P GPGT S+ Q + WM+ S
Sbjct: 90 ---PPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQ---IFPWMKESRQTSKLK 143
Query: 140 -------------VAAGGGGGSG-----------------KTRTKDKYRVVYTDHQRLEL 169
GGGGGSG + + R YT Q +EL
Sbjct: 144 NNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVEL 203
Query: 170 EKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK---------QQQQ 220
EKEFH++RY+ R+ E+A L L+ERQ+KIWFQNRR K +K K K
Sbjct: 204 EKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAG 263
Query: 221 QPPQPPMA--------HDITATPAGPS--LGGLCPSNTSLLATSSPMPVK 260
PPQP + H +T + PS G N L ++ P+K
Sbjct: 264 SPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLK 313
Score = 33.1 bits (74), Expect = 0.26
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 2 YVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA 60
Y +VL + Y P S + +G Y P PPPA P + SH
Sbjct: 329 YEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYN- 387
Query: 61 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAP 104
GAP AP +GP P + S PPP AP
Sbjct: 388 -GAPPMAPSQH----HGPCEPHPTYTDLSSHHAPPPQGRIQEAP 426
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 87.0 bits (214), Expect = 1e-17
Identities = 69/208 (33%), Positives = 92/208 (44%), Gaps = 23/208 (11%)
Query: 29 AYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPA 88
A G A P A + Y H P P A AP W PG + A P+
Sbjct: 72 AAGANAVPAAVYHHHHHHPYVH----PQAPVAAAAPDGRYMRSWLEPT-PGALSFAGLPS 126
Query: 89 SLAFGPPPDFSPVPAPPGPGPGLLAQPLG----GPGTPSSPGAQRPTPYEWMRRSVAAGG 144
S +G P+ P+ A G P L L G+P ++P+ + +
Sbjct: 127 SRPYGIKPE--PLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENES 184
Query: 145 GGGSGK------------TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLG 192
GG R+ K R YT HQ LELEKEF ++ Y+T R+ E+A L
Sbjct: 185 GGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLN 244
Query: 193 LTERQVKIWFQNRRAKERKVNKKKQQQQ 220
LTERQVKIWFQNRR K +K+NK + + +
Sbjct: 245 LTERQVKIWFQNRRMKMKKINKDRAKDE 272
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 85.5 bits (210), Expect = 4e-17
Identities = 66/191 (34%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 27 PQAYGPPAPPPAPPQYPDFSSYSH-VEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAA 85
P +YG + P P F S+ V +GA D + A G
Sbjct: 39 PASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRG 98
Query: 86 SPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGG 145
L F P + P G G G +SP Y WM+R + G
Sbjct: 99 PGDYLHFSPEQQYKP---DSSSGQGKALHDEGADRKYTSP------VYPWMQRMNSCAGA 149
Query: 146 --GGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQ 203
G G+ + R YT +Q LELEKEFH++RY+T RR+ E+A L LTERQ+KIWFQ
Sbjct: 150 VYGSHGR-----RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQ 204
Query: 204 NRRAKERKVNK 214
NRR K +K NK
Sbjct: 205 NRRMKWKKENK 215
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 84.7 bits (208), Expect = 7e-17
Identities = 68/202 (33%), Positives = 89/202 (44%), Gaps = 50/202 (24%)
Query: 24 GLGPQAY-----GPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGP 78
G+ PQ + P PP A PQ P P PAPP GA A K D G
Sbjct: 172 GILPQGFDQFYEAAPGPPFAGPQPP---------PPPAPPQPEGA---ADKGDPRTGAGG 219
Query: 79 GPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGT--PSSPGAQRPTPYEWM 136
G +P A PG P A+ GG G P GA++ +
Sbjct: 220 GGGSPCTK----------------ATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAP 263
Query: 137 RRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTER 196
+RS K R YT +Q ELE+EF ++ YI ++ +L+ L LT+R
Sbjct: 264 QRS---------------RKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDR 308
Query: 197 QVKIWFQNRRAKERKVNKKKQQ 218
QVKIWFQNRR KE+K+N+ + Q
Sbjct: 309 QVKIWFQNRRMKEKKLNRDRLQ 330
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 84.0 bits (206), Expect = 1e-16
Identities = 76/255 (29%), Positives = 100/255 (39%), Gaps = 41/255 (16%)
Query: 15 PGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGA----------- 63
P P+ PA+ P PPPA PQY + EP AP A G
Sbjct: 61 PSPSPPAAPAR------PSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPA 114
Query: 64 -PFPA----PKDDW---------AAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPG- 108
FP DD A G G + AFG P F G
Sbjct: 115 YDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGH 174
Query: 109 PGLLAQPLGGPGT---PSSPGAQRP---TPYEWM---RRSVAAGGGGGSGKTRTKDKYRV 159
PG PGT SP + P + +EWM R + G G R
Sbjct: 175 PGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRT 234
Query: 160 VYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQ 219
++ Q ELEKEFH+++Y+T R+ E+A L L + QVKIWFQNRR K++K ++
Sbjct: 235 NFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKREREGLLA 294
Query: 220 QQPPQPPMAHDITAT 234
P P+ ++ T
Sbjct: 295 TAIPVAPLQLPLSGT 309
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 82.8 bits (203), Expect = 3e-16
Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 11/82 (13%)
Query: 133 YEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLG 192
Y WMR S G+ + R R YT +Q LELEKEFHY+RY+T RR+ E+A L
Sbjct: 127 YPWMRSS-------GTDRKRG----RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLC 175
Query: 193 LTERQVKIWFQNRRAKERKVNK 214
LTERQ+KIWFQNRR K +K NK
Sbjct: 176 LTERQIKIWFQNRRMKWKKENK 197
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 81.6 bits (200), Expect = 6e-16
Identities = 75/232 (32%), Positives = 93/232 (40%), Gaps = 38/232 (16%)
Query: 27 PQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPP---TAWGAPFPAPKDDWAAAYGPGPAAP 83
P PA PD S + AP P T+W AP P+ YGP P
Sbjct: 29 PATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSW-APVPSQSSVVYHPYGPQPHLG 87
Query: 84 AASPASLAFGPP----PDFSPVPA-------PPGPGPGLLAQPLGGPGTP------SSPG 126
A + + P F PA P PG A G G SPG
Sbjct: 88 ADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPG 147
Query: 127 AQRPTPYEWMRRSVAAGGGGGSGKTRTKD-----------------KYRVVYTDHQRLEL 169
R + + A G K D K R YT +Q LEL
Sbjct: 148 ELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLEL 207
Query: 170 EKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQ 221
EKEF ++ Y+T R+ E+A L LTERQVKIWFQNRR K +K+NK+K ++Q
Sbjct: 208 EKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQ 259
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 80.5 bits (197), Expect = 1e-15
Identities = 79/275 (28%), Positives = 106/275 (38%), Gaps = 88/275 (32%)
Query: 24 GLGPQAYGPPAPPPAPPQ-------------YPDFSSYSHVEPAPAPP-----TAWGAPF 65
G P P PPP PPQ + SSY + A P A APF
Sbjct: 132 GPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPF 191
Query: 66 PA--PKDDWAAAYGPGPAAPAASPASLAFGPPPDFS------------PVPAPPGPGPGL 111
P P D A G P S A+G + P PA P PG G
Sbjct: 192 PRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQP-PGRGF 250
Query: 112 LAQPLGGPGTPSSPGAQR-----PTPYEWMRRSVAAGGGGGS------------------ 148
P G+ + +R P P ++A G GGGS
Sbjct: 251 DLPPALASGSADAARKERALDSPPPP------TLACGSGGGSQGDEEAHASSSAAEELSP 304
Query: 149 ---------------GKTRTKD-----------KYRVVYTDHQRLELEKEFHYSRYITIR 182
G ++ ++ K R YT HQ LELEKEF ++ Y+T
Sbjct: 305 APSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRE 364
Query: 183 RKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQ 217
R+ E++ ++ LT+RQVKIWFQNRR K +K+N++ +
Sbjct: 365 RRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENR 399
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 80.5 bits (197), Expect = 1e-15
Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 133 YEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLG 192
Y WM+R + G G R + R +Y+ +Q LELEKEFH++RY+T RR+ E+A L
Sbjct: 41 YPWMQRMNSHSGVGYGADRR---RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
Query: 193 LTERQVKIWFQNRRAKERK 211
LTERQ+KIWFQNRR K +K
Sbjct: 98 LTERQIKIWFQNRRMKWKK 116
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 80.5 bits (197), Expect = 1e-15
Identities = 71/216 (32%), Positives = 96/216 (44%), Gaps = 31/216 (14%)
Query: 26 GPQA--YGPPAPP--------PAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAA 75
GP+A Y P P P P Y SYS ++ P A F AP + A+
Sbjct: 123 GPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGA--NDFEAPFEQRASL 180
Query: 76 YGPGPAAPAASPASLAFGPPPDFSPVPAP----PGPGPGLLAQPLGGP-GTPSSPGAQRP 130
P A L G F P P P Q L GP G+PS +R
Sbjct: 181 ---NPRAEHLESPQL--GGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERA 235
Query: 131 --------TPYEWMRRSVAAGGGGGSGKT-RTKDKYRVVYTDHQRLELEKEFHYSRYITI 181
T + + A G+ T ++ K R YT HQ LELEKEF ++ Y+T
Sbjct: 236 KAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTR 295
Query: 182 RRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQ 217
R+ E++ + LT+RQVKIWFQNRR K +K+N++ +
Sbjct: 296 ERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENR 331
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,716,032
Number of Sequences: 37866
Number of extensions: 1517290
Number of successful extensions: 27264
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 1709
Number of HSP's that attempted gapping in prelim test: 9787
Number of HSP's gapped (non-prelim): 10792
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.