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Search of human proteins with 24797089
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 706 0.0
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 657 0.0
gi|5902054 ring finger protein 5 [Homo sapiens] 52 6e-07
gi|87241872 ring finger protein 151 [Homo sapiens] 52 6e-07
gi|109134327 PTD016 protein [Homo sapiens] 51 1e-06
gi|7706039 ring finger protein 181 [Homo sapiens] 49 5e-06
gi|21071001 autocrine motility factor receptor [Homo sapiens] 49 9e-06
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 49 9e-06
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 49 9e-06
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 48 1e-05
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 48 1e-05
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 48 1e-05
gi|7706091 bifunctional apoptosis regulator [Homo sapiens] 48 1e-05
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 48 1e-05
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 48 1e-05
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 48 1e-05
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 48 1e-05
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 47 3e-05
gi|33636758 ring finger protein 146 [Homo sapiens] 47 3e-05
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 47 3e-05
gi|24025688 ligand of numb-protein X 2 [Homo sapiens] 47 3e-05
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 47 3e-05
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 47 3e-05
gi|37595555 ring finger protein 125 [Homo sapiens] 46 4e-05
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 46 4e-05
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 46 6e-05
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 45 7e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 45 7e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 45 7e-05
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 45 1e-04
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 706 bits (1822), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60
MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
Sbjct: 1 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60
Query: 61 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120
TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
Sbjct: 61 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120
Query: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180
PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
Sbjct: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180
Query: 181 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL 240
WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL
Sbjct: 181 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL 240
Query: 241 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 300
GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
Sbjct: 241 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 300
Query: 301 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346
RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
Sbjct: 301 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 657 bits (1695), Expect = 0.0
Identities = 326/346 (94%), Positives = 326/346 (94%), Gaps = 20/346 (5%)
Query: 1 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60
MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL
Sbjct: 1 MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGL 60
Query: 61 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120
TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD
Sbjct: 61 TTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQAD 120
Query: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180
PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA
Sbjct: 121 PDSGRPLQGSLGPGGRGCSGARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVA 180
Query: 181 WFYIHGVFYHLAKRLTGITYQALRPDPLRVLMSVAPSALQLRVRSLPGEDLRARVSYRLL 240
WFYIHGVFYHLAKRLTGITY LRVRSLPGEDLRARVSYRLL
Sbjct: 181 WFYIHGVFYHLAKRLTGITY--------------------LRVRSLPGEDLRARVSYRLL 220
Query: 241 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 300
GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER
Sbjct: 221 GVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEER 280
Query: 301 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346
RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR
Sbjct: 281 RHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 326
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 52.4 bits (124), Expect = 6e-07
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSS---KAECPLCREKFPPQKLIYL 342
C +CLE R + CGHL+CW C+ W + + ECP+C+ +K++ L
Sbjct: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 79
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 52.4 bits (124), Expect = 6e-07
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 290 NPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346
N +C++C + P PC H+FC +CI W + + CP CR++ +K++++ R
Sbjct: 17 NFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 51.2 bits (121), Expect = 1e-06
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 242 VISLLHLVLSMGLQLYG----FRQRQRARKEWRLHRGLSHRRASLEERAVSRNPLCTLCL 297
+++LL+L+L + L+ +G FRQ R S+ A+ + + + +C++C
Sbjct: 326 LLALLYLILKL-LEFFGHLRTFRQVLRI-----FFTQPSYGVAASKRQCSDVDDICSICQ 379
Query: 298 EERRHPTATPCGHLFCWECITAWCSSKAECPLCR 331
E + P C H+FC EC+T W + + CPLCR
Sbjct: 380 AEFQKPILLICQHIFCEECMTLWFNREKTCPLCR 413
>gi|7706039 ring finger protein 181 [Homo sapiens]
Length = 153
Score = 49.3 bits (116), Expect = 5e-06
Identities = 23/56 (41%), Positives = 25/56 (44%)
Query: 291 PLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR 346
P+C L EE PC HLF CI W S CPLCR + P Y H R
Sbjct: 77 PVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRR 132
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 230 DLRARVSYRLLGVI--SLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRASL----- 282
DL + L G I S+ LV+ M L+ ++R R+ R + + A
Sbjct: 272 DLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATP 331
Query: 283 EERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 331
EE AV+ N C +C + + PCGHLF C+ +W CP CR
Sbjct: 332 EELAVN-NDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCR 379
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 48.5 bits (114), Expect = 9e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCRE 332
C LC+ P TPCGH FC +C+ A+CPLC++
Sbjct: 467 CALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKD 506
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 333
C C P + CGH FC C+ ++ C LC K
Sbjct: 158 CRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVK 198
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 48.5 bits (114), Expect = 9e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCRE 332
C LC+ P TPCGH FC +C+ A+CPLC++
Sbjct: 426 CALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKD 465
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 333
C C P + CGH FC C+ ++ C LC K
Sbjct: 158 CRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVK 198
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 48.1 bits (113), Expect = 1e-05
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 292 LCTLCLEERRHPTATPCGHLFCWECITAWCSSKAE-CPLCR 331
LC +C E + PCGHL C C+TAW S + CP CR
Sbjct: 372 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 412
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITA-W----------CSSKAECPLCREKFP 335
C +CLE R P PCGH FC C+ A W A CPLC+E FP
Sbjct: 9 CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEPFP 62
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 47.8 bits (112), Expect = 1e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 292 LCTLCLEERRHPTATPCGHLFCWECITAWCSSKAE-CPLCR 331
LC +C E + PCGHL C C+T+W S+ + CP CR
Sbjct: 380 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 420
>gi|7706091 bifunctional apoptosis regulator [Homo sapiens]
Length = 450
Score = 47.8 bits (112), Expect = 1e-05
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAW--CSSKAECPLCREKFP--PQKLIYLR 343
C C + +PT CGH FC C+ W S K ECP CREK+ P+ I LR
Sbjct: 34 CHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEGFPKVSILLR 88
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 47.8 bits (112), Expect = 1e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 333
C LC+ P TPCGH FC +C+ CPLC++K
Sbjct: 449 CALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDK 489
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 47.8 bits (112), Expect = 1e-05
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE---CPLCREKFPPQKLIYL 342
C +CL+ + + CGHLFCW C+ W ++ CP+C+ K+I L
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 91
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 47.8 bits (112), Expect = 1e-05
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE---CPLCREKFPPQKLIYL 342
C +CL+ + + CGHLFCW C+ W ++ CP+C+ K+I L
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 91
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 47.8 bits (112), Expect = 1e-05
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 284 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 331
++ +C +C E R P C H+FC EC+ W + CPLCR
Sbjct: 375 QQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCR 422
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 47.0 bits (110), Expect = 3e-05
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 287 VSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCS-------SKAECPLCREKFPPQKL 339
+ + C +CLE P + CGH FC CITA ++ CP+C+ +F P L
Sbjct: 9 IEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNL 68
Query: 340 IYLRH 344
RH
Sbjct: 69 RPNRH 73
>gi|33636758 ring finger protein 146 [Homo sapiens]
Length = 358
Score = 47.0 bits (110), Expect = 3e-05
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 291 PLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFP 335
P C +CL+ HP + PC H+FC+ C+ C LCR++ P
Sbjct: 34 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 78
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 47.0 bits (110), Expect = 3e-05
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAE-CPLCREKFP 335
C +CL + P PCGH FC CI W + CP CRE FP
Sbjct: 12 CAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKACPECREPFP 55
>gi|24025688 ligand of numb-protein X 2 [Homo sapiens]
Length = 690
Score = 47.0 bits (110), Expect = 3e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 284 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREK 333
+ V + +C +CL+ P TPCGH FC++C+ + K CPL R++
Sbjct: 41 QNEVDDDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDFCPLDRKR 90
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 46.6 bits (109), Expect = 3e-05
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 264 RARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSS 323
+A + R+H +S + L S LC +C E + PCGHL C C+ AW S
Sbjct: 278 QAEPQQRIH--VSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS 335
Query: 324 KAE-CPLCR 331
++ CP CR
Sbjct: 336 DSQTCPFCR 344
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 46.6 bits (109), Expect = 3e-05
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 264 RARKEWRLHRGLSHRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSS 323
+A + R+H +S + L S LC +C E + PCGHL C C+ AW S
Sbjct: 324 QAEPQQRIH--VSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS 381
Query: 324 KAE-CPLCR 331
++ CP CR
Sbjct: 382 DSQTCPFCR 390
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 46.2 bits (108), Expect = 4e-05
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECI-TAWCSSKAECPLCREKFPPQ 337
C +CLE P T CGH+FC CI T+ ++K CP CR P +
Sbjct: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSE 82
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 46.2 bits (108), Expect = 4e-05
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 285 RAVSRNPLCTLCLEERRHPTATPCGHLFCWECIT---AWCSSKAECPLCREKFPPQKL 339
R++ C++CL+ R P CGH+FC C T S+ CPLC++ F + +
Sbjct: 8 RSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENI 65
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 45.8 bits (107), Expect = 6e-05
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPL-CREKFPPQKL 339
C LC + P TPCGH+FC C+ W + CP CR + ++L
Sbjct: 18 CALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKEL 65
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 45.4 bits (106), Expect = 7e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 287 VSRNPLCTLCLEERRHPTATPCGHLFCWECITA------WCSSKAECPLCREKFPPQKLI 340
V C +CLE P + CGH FC C+TA ++ CP+CR + P+ +
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68
Query: 341 YLRH 344
RH
Sbjct: 69 PNRH 72
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 45.4 bits (106), Expect = 7e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 287 VSRNPLCTLCLEERRHPTATPCGHLFCWECITA------WCSSKAECPLCREKFPPQKLI 340
V C +CLE P + CGH FC C+TA ++ CP+CR + P+ +
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68
Query: 341 YLRH 344
RH
Sbjct: 69 PNRH 72
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 45.4 bits (106), Expect = 7e-05
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 287 VSRNPLCTLCLEERRHPTATPCGHLFCWECITA------WCSSKAECPLCREKFPPQKLI 340
V C +CLE P + CGH FC C+TA ++ CP+CR + P+ +
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68
Query: 341 YLRH 344
RH
Sbjct: 69 PNRH 72
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 45.1 bits (105), Expect = 1e-04
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 289 RNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKF 334
R P+C CL E+ C H+FC CI W + A CP+ R+ F
Sbjct: 40 RCPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLASCPIDRKPF 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,644,387
Number of Sequences: 37866
Number of extensions: 667740
Number of successful extensions: 2947
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 426
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.