Guide to the Human Genome
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Search of human proteins with 24497538

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24497538 homeobox C4 [Homo sapiens]
         (264 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24497538 homeobox C4 [Homo sapiens]                                563   e-161
gi|24497540 homeobox C4 [Homo sapiens]                                563   e-161
gi|13273315 homeobox B4 [Homo sapiens]                                280   9e-76
gi|23397672 homeobox D4 [Homo sapiens]                                261   4e-70
gi|148613882 homeobox A4 [Homo sapiens]                               226   1e-59
gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo...   167   7e-42
gi|24497517 homeobox A5 [Homo sapiens]                                155   3e-38
gi|4504469 homeobox B5 [Homo sapiens]                                 152   3e-37
gi|11321638 homeobox C5 [Homo sapiens]                                136   2e-32
gi|23503237 homeobox B6 [Homo sapiens]                                132   3e-31
gi|24497556 homeobox A7 [Homo sapiens]                                129   2e-30
gi|85068580 homeobox B7 [Homo sapiens]                                126   2e-29
gi|13489077 homeobox A6 [Homo sapiens]                                122   4e-28
gi|24497513 homeobox A3 isoform a [Homo sapiens]                      116   2e-26
gi|13562112 homeobox A3 isoform a [Homo sapiens]                      116   2e-26
gi|24497544 homeobox C6 isoform 2 [Homo sapiens]                      115   3e-26
gi|4758554 homeobox C6 isoform 1 [Homo sapiens]                       115   3e-26
gi|19923391 homeobox D3 [Homo sapiens]                                112   3e-25
gi|13273317 homeobox B8 [Homo sapiens]                                110   1e-24
gi|121114296 caudal type homeobox 1 [Homo sapiens]                    109   2e-24
gi|4504465 homeobox B2 [Homo sapiens]                                 109   3e-24
gi|84570137 homeobox B3 [Homo sapiens]                                108   5e-24
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]          106   2e-23
gi|15029506 homeobox D8 [Homo sapiens]                                102   4e-22
gi|5031761 homeobox A1 isoform a [Homo sapiens]                        99   5e-21
gi|24497526 homeobox B1 [Homo sapiens]                                 98   6e-21
gi|10140847 homeobox A2 [Homo sapiens]                                 96   2e-20
gi|169636435 caudal type homeobox 2 [Homo sapiens]                     96   3e-20
gi|12056969 homeobox C8 [Homo sapiens]                                 96   3e-20
gi|18959212 GS homeobox 2 [Homo sapiens]                               95   5e-20

>gi|24497538 homeobox C4 [Homo sapiens]
          Length = 264

 Score =  563 bits (1450), Expect = e-161
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
           MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
Sbjct: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60

Query: 61  SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120
           SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
Sbjct: 61  SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120

Query: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
           APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
Sbjct: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180

Query: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
           LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240

Query: 241 GTSEDHSQSATPPEQQRAEDITRL 264
           GTSEDHSQSATPPEQQRAEDITRL
Sbjct: 241 GTSEDHSQSATPPEQQRAEDITRL 264


>gi|24497540 homeobox C4 [Homo sapiens]
          Length = 264

 Score =  563 bits (1450), Expect = e-161
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
           MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
Sbjct: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60

Query: 61  SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120
           SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
Sbjct: 61  SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120

Query: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
           APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
Sbjct: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180

Query: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
           LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240

Query: 241 GTSEDHSQSATPPEQQRAEDITRL 264
           GTSEDHSQSATPPEQQRAEDITRL
Sbjct: 241 GTSEDHSQSATPPEQQRAEDITRL 264


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score =  280 bits (716), Expect = 9e-76
 Identities = 151/252 (59%), Positives = 173/252 (68%), Gaps = 36/252 (14%)

Query: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH-------- 49
           M MSS+L++SNY+DPKFPPCEEYSQ+ Y+P +HSP YY  G+ RES FQ           
Sbjct: 1   MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60

Query: 50  --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP 100
                   ++  PPPPP P  P           PG S R   P  AG   PE  Q  CE 
Sbjct: 61  TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE- 111

Query: 101 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159
                 + S SP PP C+Q P    PS +A K+P+VYPWM+K+HVSTVNPNY GGEPKRS
Sbjct: 112 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS 165

Query: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
           RTAYTRQQVLELEKEFHYNRYLTRRRR+EIAH+LCLSERQIKIWFQNRRMKWKKDH+LPN
Sbjct: 166 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN 225

Query: 220 TKVRSAPPAGAA 231
           TK+RS   AG+A
Sbjct: 226 TKIRSGGAAGSA 237


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score =  261 bits (667), Expect = 4e-70
 Identities = 147/271 (54%), Positives = 179/271 (66%), Gaps = 23/271 (8%)

Query: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
           M+MSSY+++S Y+DPKFPPCEEY Q  Y+ E   +YYG   + G       LYP    RP
Sbjct: 1   MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQ-GADFQPPGLYP----RP 55

Query: 61  SYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPP 115
            + E+ +  +   GPG++   RGHG  P   G H+    +    PAP +   A P P   
Sbjct: 56  DFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEPC--PAPPAPPPA-PLPGAR 111

Query: 116 ACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEK 173
           A SQ  P  P S  A KQP +VYPWMKK+HV++VNPNY GGEPKRSRTAYTRQQVLELEK
Sbjct: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171

Query: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPS 233
           EFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKDH+LPNTK RS+       S
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------S 224

Query: 234 TLSAATPGTSEDHSQSATPPEQQRAEDITRL 264
           + S+++  +S   SQ   P  +    D+T L
Sbjct: 225 SSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL 255


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score =  226 bits (577), Expect = 1e-59
 Identities = 136/311 (43%), Positives = 165/311 (53%), Gaps = 64/311 (20%)

Query: 1   MIMSSYLMDSNYIDPKFPPCEEYSQNS------------------------YIPEHSPEY 36
           M MSS+L++SNYI+PKFPP EEY+Q+S                        ++P   P+ 
Sbjct: 1   MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60

Query: 37  Y----GRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-------GPGN-------- 77
                GR   + +        P  P    YP    + T+          PG         
Sbjct: 61  PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120

Query: 78  SRGHGPAQAGHHH----------------PEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
           ++  GPA   H                  P  +   CE AP +    +   AP      A
Sbjct: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180

Query: 122 PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYL 181
              P     K+P+VYPWMKKIHVS VNP+YNGGEPKRSRTAYTRQQVLELEKEFH+NRYL
Sbjct: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240

Query: 182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPG 241
           TRRRRIEIAH+LCLSERQ+KIWFQNRRMKWKKDH+LPNTK+RS+  A A     SA  PG
Sbjct: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPG 295

Query: 242 TSEDHSQSATP 252
            ++  S    P
Sbjct: 296 KAQTQSPHLHP 306


>gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo
           sapiens]
          Length = 105

 Score =  167 bits (424), Expect = 7e-42
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 184 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 243
           RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
Sbjct: 25  RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84

Query: 244 EDHSQSATPPEQQRAEDITRL 264
           EDHSQSATPPEQQRAEDITRL
Sbjct: 85  EDHSQSATPPEQQRAEDITRL 105


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score =  155 bits (392), Expect = 3e-38
 Identities = 87/179 (48%), Positives = 109/179 (60%), Gaps = 17/179 (9%)

Query: 54  PPPPPRPSYPERQYSCTSLQ-GPGNSRGHGPAQA-----GHHHPEKSQSLCEPAPLSGAS 107
           P P P P        C+++   PG+   HG   +     G      S  +     +  AS
Sbjct: 96  PQPDPLP--------CSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTAS 147

Query: 108 ASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
            +   AP +  Q  A   PS A   QP +YPWM+K+H+S  + N  G E KR+RTAYTR 
Sbjct: 148 GAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRY 205

Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
           Q LELEKEFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKD++L +  + +A
Sbjct: 206 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264


>gi|4504469 homeobox B5 [Homo sapiens]
          Length = 269

 Score =  152 bits (384), Expect = 3e-37
 Identities = 94/216 (43%), Positives = 123/216 (56%), Gaps = 31/216 (14%)

Query: 33  SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------GNSRGHGP-- 83
           S  ++G   ES         +P P   P + +   SC SL  P       G+S G  P  
Sbjct: 62  SSSHFGAVGESS------RAFPAPAQEPRFRQAASSC-SLSSPESLPCTNGDSHGAKPSA 114

Query: 84  ---------AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAA--SKQ 132
                    A +  +  E  ++     P   AS   SP+  A +QP P   S+AA   + 
Sbjct: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSL-ARAQPEPMATSTAAPEGQT 173

Query: 133 PIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHS 192
           P ++PWM+K+H+S    +  G + KR+RTAYTR Q LELEKEFH+NRYLTRRRRIEIAH+
Sbjct: 174 PQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 230

Query: 193 LCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPA 228
           LCLSERQIKIWFQNRRMKWKKD++L +  + +A  A
Sbjct: 231 LCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266


>gi|11321638 homeobox C5 [Homo sapiens]
          Length = 222

 Score =  136 bits (342), Expect = 2e-32
 Identities = 95/241 (39%), Positives = 121/241 (50%), Gaps = 51/241 (21%)

Query: 3   MSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP 56
           MSSY+ +S Y   P  P      C  Y   S +      Y G      F        PPP
Sbjct: 1   MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------PPP 52

Query: 57  PPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQSLCEPA 101
            P  S            +P+R  +C++   PG++ G     P   G +  + ++   E  
Sbjct: 53  APSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEER 111

Query: 102 PLSGASASPSPA----PPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP 156
             S        A    P   SQP AP          P +YPWM K+H+S      +  + 
Sbjct: 112 AKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMS------HETDG 155

Query: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
           KRSRT+YTR Q LELEKEFH+NRYLTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKKD +
Sbjct: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215

Query: 217 L 217
           +
Sbjct: 216 M 216


>gi|23503237 homeobox B6 [Homo sapiens]
          Length = 224

 Score =  132 bits (332), Expect = 3e-31
 Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 29/231 (12%)

Query: 8   MDSNYIDPKFPPCEEYSQNSYI---PEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPE 64
           M S +++  FP      Q S++   P +S  Y    R      H+   Y P P +    +
Sbjct: 1   MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLR------HYPAPYGPGPGQ----D 50

Query: 65  RQYSCTSLQGPGNSRGHGPAQAGHHHP-----EKSQSLCEPAPLSGASASP----SPAPP 115
           + ++ +S   P    G+G A    + P      + +S C    LSGA   P     P   
Sbjct: 51  KGFATSSYYPPAGG-GYGRAAPCDYGPAPAFYREKESACA---LSGADEQPPFHPEPRKS 106

Query: 116 ACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKE 174
            C+Q       +   K    VYPWM++++  + N +  G   +R R  YTR Q LELEKE
Sbjct: 107 DCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQTLELEKE 164

Query: 175 FHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
           FHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+ +L +    SA
Sbjct: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215


>gi|24497556 homeobox A7 [Homo sapiens]
          Length = 230

 Score =  129 bits (325), Expect = 2e-30
 Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 11/144 (7%)

Query: 113 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE 172
           A  AC +        AA     +YPWM+           +G + KR R  YTR Q LELE
Sbjct: 97  AKGACDKTDEGALHGAAEANFRIYPWMRS----------SGPDRKRGRQTYTRYQTLELE 146

Query: 173 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP 232
           KEFH+NRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+H+       +A P GA P
Sbjct: 147 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK-DEGPTAAAAPEGAVP 205

Query: 233 STLSAATPGTSEDHSQSATPPEQQ 256
           S  + A    +++        +++
Sbjct: 206 SAAATAAADKADEEDDDEEEEDEE 229


>gi|85068580 homeobox B7 [Homo sapiens]
          Length = 217

 Score =  126 bits (316), Expect = 2e-29
 Identities = 74/170 (43%), Positives = 90/170 (52%), Gaps = 20/170 (11%)

Query: 57  PPRPSYPERQYS--CTSLQG--PGNSRGHGPAQAGHH------HPEKSQSLCEPAPLSGA 106
           P RP Y     +    S+QG  PG     G + AG +       P      C P   + +
Sbjct: 38  PQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLS 97

Query: 107 SASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
              P  +  A           AA     +YPWM+           +G + KR R  YTR 
Sbjct: 98  GVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS----------SGTDRKRGRQTYTRY 147

Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
           Q LELEKEFHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+++
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197


>gi|13489077 homeobox A6 [Homo sapiens]
          Length = 233

 Score =  122 bits (305), Expect = 4e-28
 Identities = 77/169 (45%), Positives = 95/169 (56%), Gaps = 25/169 (14%)

Query: 62  YPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
           Y ++  S  S  G G  RG  P    H  PE+     +P   SG             Q  
Sbjct: 80  YSDKDLSGASPSGSGKQRG--PGDYLHFSPEQQY---KPDSSSG-------------QGK 121

Query: 122 PDHPSSAASKQPI-VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
             H   A  K    VYPWM++++ S     Y G   +R R  YTR Q LELEKEFH+NRY
Sbjct: 122 ALHDEGADRKYTSPVYPWMQRMN-SCAGAVY-GSHGRRGRQTYTRYQTLELEKEFHFNRY 179

Query: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229
           LTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKK+++L    + S  P+G
Sbjct: 180 LTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL----INSTQPSG 224


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score =  116 bits (291), Expect = 2e-26
 Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 56/230 (24%)

Query: 43  SGFQHH-HQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHH--------PEK 93
           +GF ++ +Q+ YP      +  E      SLQ P ++ GH  A              P +
Sbjct: 22  NGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQ 81

Query: 94  SQSLCEP---------APLSGASASPSPAPPACSQPAPDHPSSA--------------AS 130
             SL EP         AP +     P+P PPA +  AP  PSSA              A+
Sbjct: 82  PPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAA 141

Query: 131 KQPI---------VYPWMKKIHVSTVNP--NYNGGEP-------------KRSRTAYTRQ 166
           K P+         ++PWMK+   +T     + + GE              KR+RTAYT  
Sbjct: 142 KSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSA 201

Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
           Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 202 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score =  116 bits (291), Expect = 2e-26
 Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 56/230 (24%)

Query: 43  SGFQHH-HQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHH--------PEK 93
           +GF ++ +Q+ YP      +  E      SLQ P ++ GH  A              P +
Sbjct: 22  NGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQ 81

Query: 94  SQSLCEP---------APLSGASASPSPAPPACSQPAPDHPSSA--------------AS 130
             SL EP         AP +     P+P PPA +  AP  PSSA              A+
Sbjct: 82  PPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAA 141

Query: 131 KQPI---------VYPWMKKIHVSTVNP--NYNGGEP-------------KRSRTAYTRQ 166
           K P+         ++PWMK+   +T     + + GE              KR+RTAYT  
Sbjct: 142 KSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSA 201

Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
           Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 202 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251


>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
          Length = 153

 Score =  115 bits (289), Expect = 3e-26
 Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)

Query: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
           +YPWM++++ S     Y G + +R R  Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 40  IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97

Query: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
           L+ERQIKIWFQNRRMKWKK+  L  T   S    GA   +L        ++  +  T  E
Sbjct: 98  LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 149

Query: 255 QQR 257
           +Q+
Sbjct: 150 KQK 152


>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
          Length = 235

 Score =  115 bits (289), Expect = 3e-26
 Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)

Query: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
           +YPWM++++ S     Y G + +R R  Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179

Query: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
           L+ERQIKIWFQNRRMKWKK+  L  T   S    GA   +L        ++  +  T  E
Sbjct: 180 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 231

Query: 255 QQR 257
           +Q+
Sbjct: 232 KQK 234


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score =  112 bits (280), Expect = 3e-25
 Identities = 88/247 (35%), Positives = 112/247 (45%), Gaps = 56/247 (22%)

Query: 37  YGRTRES-GFQHHHQELYPPPPPRPS----YPERQYSCTSLQ------------------ 73
           Y +T ++ G+   HQ  YPPP    S    YP    S  S                    
Sbjct: 34  YSKTTDTYGYSTPHQP-YPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMR 92

Query: 74  -GPGNSRGHGPAQAGHHHP--EKSQSLCEPAPLSGASASPSPAPPACSQPA------PDH 124
            G GNS+G G    G   P     Q   +P P        SP  P    PA      P+ 
Sbjct: 93  PGTGNSQGGG---GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNA 149

Query: 125 PSSAASKQPIVYPWMKKIHVSTVNPNY-------------NGGEPKRSRTAYTRQQVLEL 171
            SS+A+    ++PWMK+   ++   N               G   KR RTAYT  Q++EL
Sbjct: 150 SSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVEL 209

Query: 172 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD-------HRLPNTKVRS 224
           EKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD       H   +     
Sbjct: 210 EKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPER 269

Query: 225 APPAGAA 231
           +PP G A
Sbjct: 270 SPPLGGA 276


>gi|13273317 homeobox B8 [Homo sapiens]
          Length = 243

 Score =  110 bits (276), Expect = 1e-24
 Identities = 82/233 (35%), Positives = 114/233 (48%), Gaps = 33/233 (14%)

Query: 3   MSSYLMDSNYIDPKFPPCEEYSQNSY-------IPEHSPEYYGRTRESGFQHHHQ--ELY 53
           MSSY ++S +   K+   E    N Y       +       YG +    FQH  Q  E Y
Sbjct: 1   MSSYFVNSLF--SKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFY 58

Query: 54  PPPPPRPSYPERQYSCT-SLQG-PGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPS 111
             P    + P +Q  C  +  G PGN  G+ P Q       +   L + A    A+AS  
Sbjct: 59  HGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118

Query: 112 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL 171
                 S+ +P            ++PWM+        P    G  +R R  Y+R Q LEL
Sbjct: 119 GEEAEGSEQSPSPTQ--------LFPWMR--------PQAAAGR-RRGRQTYSRYQTLEL 161

Query: 172 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 221
           EKEF +N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++   + P++K
Sbjct: 162 EKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score =  109 bits (273), Expect = 2e-24
 Identities = 81/236 (34%), Positives = 109/236 (46%), Gaps = 28/236 (11%)

Query: 29  IPEHSPEYYGRTRESGFQHHHQELYPPPPPR--PSYPE-RQYSCTS-LQGPGNSRG---- 80
           + + SP Y G  R +      Q   PP PP   P YP+   YS       P  + G    
Sbjct: 7   LDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFP 66

Query: 81  ---------HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP--APDHPSSAA 129
                    +GP  A       S +   P   S   A P P P   +QP   P  PSS  
Sbjct: 67  APKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPG 126

Query: 130 SKQPIVYPWMKKIHVSTVNPNYNGGEPK-----RSRTAYTRQQVLELEKEFHYNRYLTRR 184
           +++P  Y WM++    +V     GG  K     + R  YT  Q LELEKEFHY+RY+T R
Sbjct: 127 AQRPTPYEWMRR----SVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIR 182

Query: 185 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
           R+ E+A +L L+ERQ+KIWFQNRR K +K ++    + +   P  A   T + A P
Sbjct: 183 RKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGP 238


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score =  109 bits (272), Expect = 3e-24
 Identities = 80/212 (37%), Positives = 103/212 (48%), Gaps = 42/212 (19%)

Query: 52  LYPPPPP-RPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP 110
           L PPPPP   ++P  Q   ++LQ P                 +SQ   E  P   A   P
Sbjct: 42  LIPPPPPFEQTFPSLQPGASTLQRP-----------------RSQKRAEDGP---ALPPP 81

Query: 111 SPAPPACSQPAPDHP---SSAASKQPIVY-----PWMKKIHVSTVN--------PNYNGG 154
            P P   + PAP+ P      ++K+P        P    +  S V         P   GG
Sbjct: 82  PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141

Query: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK- 213
             +R RTAYT  Q+LELEKEFH+N+YL R RR+EIA  L L+ERQ+K+WFQNRRMK K+ 
Sbjct: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201

Query: 214 -DHRLPNTKVRSAPPA---GAAPSTLSAATPG 241
             HR P     + P A      P+   AA+PG
Sbjct: 202 TQHREPPDGEPACPGALEDICDPAEEPAASPG 233


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score =  108 bits (270), Expect = 5e-24
 Identities = 83/261 (31%), Positives = 115/261 (44%), Gaps = 61/261 (23%)

Query: 54  PPPPPRPSYP----ERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASAS 109
           PP PP  +      + Q S  SLQ  GN+  H  ++  +    +     EP      S  
Sbjct: 32  PPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPP 91

Query: 110 PSPAP------------PACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP- 156
           PS AP            P+ S P    P + ++    ++PWMK+   ++   N + G   
Sbjct: 92  PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151

Query: 157 -------------------------------------KRSRTAYTRQQVLELEKEFHYNR 179
                                                KR+RTAYT  Q++ELEKEFH+NR
Sbjct: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211

Query: 180 YLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA--PPAGAAPSTLSA 237
           YL R RR+E+A+ L LSERQIKIWFQNRRMK+KKD +       S    PAG+ P  + +
Sbjct: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271

Query: 238 ATPGTSEDHS-----QSATPP 253
                +  HS     +S +PP
Sbjct: 272 TAGFMNALHSMTPSYESPSPP 292


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score =  106 bits (264), Expect = 2e-23
 Identities = 72/179 (40%), Positives = 91/179 (50%), Gaps = 35/179 (19%)

Query: 54  PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAG-------HHHPEKSQSLCEPAPLSGA 106
           PPPPP P +P    +      P  S    P  A        HHH         PA L+  
Sbjct: 43  PPPPPHP-FPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHL--------PAQLA-- 91

Query: 107 SASPSPAPPACSQPAPDHPSSAASKQP----IVYPWMKKIHVSTVNPNYNGG-------E 155
                P PPA   P P+       ++P    + +PWMK          + GG       E
Sbjct: 92  ----LPHPPA--GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE 145

Query: 156 PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD 214
            KR+RTAYTR Q+LELEKEF +N+Y++R RR+E+A  L L+ER IKIWFQNRRMKWKK+
Sbjct: 146 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204


>gi|15029506 homeobox D8 [Homo sapiens]
          Length = 290

 Score =  102 bits (253), Expect = 4e-22
 Identities = 74/218 (33%), Positives = 99/218 (45%), Gaps = 50/218 (22%)

Query: 35  EYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGH----GPA---QAG 87
           + YG +  +GF H   + +  P P P  P     C   +G G    H     PA   QA 
Sbjct: 52  QLYGNSA-AGFPHAPPQAHAHPHPSP--PPSGTGCGGREGRGQEYFHPGGGSPAAAYQAA 108

Query: 88  HHHPEKSQSLCEPAPLSGASASPSPAP------------------------PACSQPA-- 121
              P        P P  G +    PA                         P C   +  
Sbjct: 109 PPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGN 168

Query: 122 ----PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHY 177
               PDH + ++S   + +PWM+        P    G  +R R  Y+R Q LELEKEF +
Sbjct: 169 IGEDPDHLNQSSSPSQM-FPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLF 218

Query: 178 NRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH 215
           N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 219 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256


>gi|5031761 homeobox A1 isoform a [Homo sapiens]
          Length = 335

 Score = 98.6 bits (244), Expect = 5e-21
 Identities = 71/209 (33%), Positives = 92/209 (44%), Gaps = 39/209 (18%)

Query: 30  PEHSPEYY-GRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGH 88
           P+ +P  Y G       QHHH                       QG        P    H
Sbjct: 124 PQCAPAVYSGNLSSPMVQHHHHH---------------------QGYAGGAVGSPQYIHH 162

Query: 89  HHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVN 148
            + ++ QSL      +  S   +    AC  PA +  S A +     + WMK       N
Sbjct: 163 SYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQT-----FDWMKVKR----N 213

Query: 149 PNYNG--------GEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQI 200
           P   G        G+P   RT +T +Q+ ELEKEFH+N+YLTR RR+EIA SL L+E Q+
Sbjct: 214 PPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQV 273

Query: 201 KIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229
           KIWFQNRRMK KK  +     +  A P G
Sbjct: 274 KIWFQNRRMKQKKREKEGLLPISPATPPG 302


>gi|24497526 homeobox B1 [Homo sapiens]
          Length = 301

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 86/271 (31%), Positives = 116/271 (42%), Gaps = 50/271 (18%)

Query: 17  FPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP-----PRPSYPERQYS--- 68
           FPP    + +SY  E    Y G      FQ +       PP     P PS     Y+   
Sbjct: 31  FPPSSAQAVDSYASEG--RYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAA 88

Query: 69  CTSLQGPGN--SRGHGPAQAGHHHPEKSQS----LCEPAPLSGASASPSPA--PPACSQ- 119
           C+   GP      G      G+ HP    +    L +     GA   P P   PP  ++ 
Sbjct: 89  CSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQ 148

Query: 120 ------------------PAPDHPSSAASKQPIVYPWMK--KIHVSTVNPNYNG-GEPKR 158
                             P P  P++  ++    + WMK  +    T   +  G G P  
Sbjct: 149 TASFAPAYADLLSEDKETPCPSEPNTPTAR---TFDWMKVKRNPPKTAKVSEPGLGSPSG 205

Query: 159 SRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLP 218
            RT +T +Q+ ELEKEFH+N+YL+R RR+EIA +L L+E Q+KIWFQNRRMK KK  R  
Sbjct: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER-E 264

Query: 219 NTKVRSAPP------AGAAPSTLSAATPGTS 243
             +V  APP      AG A    +  +P  S
Sbjct: 265 EGRVPPAPPGCPKEAAGDASDQSTCTSPEAS 295


>gi|10140847 homeobox A2 [Homo sapiens]
          Length = 376

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 32/140 (22%)

Query: 102 PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKK-------------------- 141
           P  GA   P P+P      +   P  A + QP  YPWMK+                    
Sbjct: 65  PRHGAGGRPKPSPAG----SRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120

Query: 142 -------IHVSTVN-PNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193
                   H  ++   + +GG  +R RTAYT  Q+LELEKEFH+N+YL R RR+EIA  L
Sbjct: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180

Query: 194 CLSERQIKIWFQNRRMKWKK 213
            L+ERQ+K+WFQNRRMK K+
Sbjct: 181 DLTERQVKVWFQNRRMKHKR 200


>gi|169636435 caudal type homeobox 2 [Homo sapiens]
          Length = 313

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 4/193 (2%)

Query: 68  SCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSS 127
           S  +  G  +   + P    HHHP    +   P+  SG   + +P PP  +  A     S
Sbjct: 100 SPAAAMGYSSPADYHPHHHPHHHPHHPAAA--PSCASGLLQTLNPGPPGPAATAAAEQLS 157

Query: 128 AASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRI 187
              ++  +  WM+K    ++          + R  YT  Q LELEKEFHY+RY+T RR+ 
Sbjct: 158 PGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKA 217

Query: 188 EIAHSLCLSERQIKIWFQNRRMKWKK--DHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 245
           E+A +L LSERQ+KIWFQNRR K +K    +L   + +  P     P       PG    
Sbjct: 218 ELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRS 277

Query: 246 HSQSATPPEQQRA 258
             +  +P    +A
Sbjct: 278 VPEPLSPVSSLQA 290


>gi|12056969 homeobox C8 [Homo sapiens]
          Length = 242

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 41/236 (17%)

Query: 8   MDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQY 67
           M S +++P F    +Y     +    P YY           H  +Y P    P +    +
Sbjct: 1   MSSYFVNPLF---SKYKAGESL---EPAYYDCRFPQSVGRSHALVYGPGGSAPGFQHASH 54

Query: 68  SCTSLQGPGNSRGHGPAQAGHHHPEKSQSLC-EPAPLSGASASPSPAPPACSQPA----- 121
                   G S   G + +G+     S S   + +   G  A P  +     Q A     
Sbjct: 55  HVQDFFHHGTS---GISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQY 111

Query: 122 PDHPSSAA-------------SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQV 168
           PD  SSA              S   +++PWM+        P+  G   +  R  Y+R Q 
Sbjct: 112 PDCKSSANTNSSEGQGHLNQNSSPSLMFPWMR--------PHAPGR--RSGRQTYSRYQT 161

Query: 169 LELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 221
           LELEKEF +N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++   +LP  +
Sbjct: 162 LELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGAR 217


>gi|18959212 GS homeobox 2 [Homo sapiens]
          Length = 304

 Score = 95.1 bits (235), Expect = 5e-20
 Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 10/138 (7%)

Query: 81  HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDH--PSSAASKQPIVYPW 138
           H P Q  HHH +  Q    P   + A+A+ + A  A +   P H  P   A+   +  P 
Sbjct: 129 HHPPQHHHHHHQPQQ----PGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADP- 183

Query: 139 MKKIHVSTVNPNYNGGEP--KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS 196
            ++ H  T+  +     P  KR RTA+T  Q+LELE+EF  N YL+R RRIEIA  L LS
Sbjct: 184 -RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS 242

Query: 197 ERQIKIWFQNRRMKWKKD 214
           E+Q+KIWFQNRR+K KK+
Sbjct: 243 EKQVKIWFQNRRVKHKKE 260


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.128    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,598,617
Number of Sequences: 37866
Number of extensions: 903894
Number of successful extensions: 10720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 687
Number of HSP's that attempted gapping in prelim test: 7407
Number of HSP's gapped (non-prelim): 3425
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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