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Search of human proteins with 24497526
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497526 homeobox B1 [Homo sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497526 homeobox B1 [Homo sapiens] 632 0.0
gi|5031761 homeobox A1 isoform a [Homo sapiens] 208 4e-54
gi|13375632 homeobox D1 [Homo sapiens] 153 2e-37
gi|23397672 homeobox D4 [Homo sapiens] 110 2e-24
gi|4504465 homeobox B2 [Homo sapiens] 107 1e-23
gi|19923391 homeobox D3 [Homo sapiens] 104 8e-23
gi|24497513 homeobox A3 isoform a [Homo sapiens] 102 4e-22
gi|13562112 homeobox A3 isoform a [Homo sapiens] 102 4e-22
gi|148613882 homeobox A4 [Homo sapiens] 102 4e-22
gi|89257348 homeo box HB9 [Homo sapiens] 100 2e-21
gi|24497538 homeobox C4 [Homo sapiens] 98 8e-21
gi|24497540 homeobox C4 [Homo sapiens] 98 8e-21
gi|84570137 homeobox B3 [Homo sapiens] 98 1e-20
gi|169636435 caudal type homeobox 2 [Homo sapiens] 97 1e-20
gi|121114296 caudal type homeobox 1 [Homo sapiens] 97 2e-20
gi|24497517 homeobox A5 [Homo sapiens] 96 5e-20
gi|13273315 homeobox B4 [Homo sapiens] 94 1e-19
gi|10140847 homeobox A2 [Homo sapiens] 92 6e-19
gi|182765442 homeobox A10 isoform a [Homo sapiens] 92 7e-19
gi|24497515 homeobox A3 isoform b [Homo sapiens] 91 1e-18
gi|24497556 homeobox A7 [Homo sapiens] 89 5e-18
gi|23503237 homeobox B6 [Homo sapiens] 89 5e-18
gi|85068580 homeobox B7 [Homo sapiens] 87 1e-17
gi|15029506 homeobox D8 [Homo sapiens] 85 7e-17
gi|15029508 homeobox B9 [Homo sapiens] 84 2e-16
gi|11321638 homeobox C5 [Homo sapiens] 82 4e-16
gi|194363768 homeobox D9 [Homo sapiens] 82 8e-16
gi|4504469 homeobox B5 [Homo sapiens] 82 8e-16
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 81 1e-15
gi|33457326 GS homeobox 1 [Homo sapiens] 80 2e-15
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 632 bits (1629), Expect = 0.0
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN 60
MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN
Sbjct: 1 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN 60
Query: 61 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL 120
SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL
Sbjct: 61 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL 120
Query: 121 GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF 180
GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF
Sbjct: 121 GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF 180
Query: 181 DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL 240
DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL
Sbjct: 181 DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL 240
Query: 241 ELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT 300
ELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT
Sbjct: 241 ELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT 300
Query: 301 S 301
S
Sbjct: 301 S 301
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 208 bits (530), Expect = 4e-54
Identities = 144/337 (42%), Positives = 184/337 (54%), Gaps = 45/337 (13%)
Query: 1 MDYNRMNSFLEYPLCNRGPS------AYSAHSAPTSFPPSSAQAVDSYASEGRY----GG 50
MD RMNSFLEYP+ + G S AY + T+F S A + +S + R+ G
Sbjct: 1 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV 59
Query: 51 GLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYGPSQY------YPLG 102
+ SP + + QP + + +S G Y+ ++C PSYG + Y L
Sbjct: 60 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN 114
Query: 103 QSEGDGGYFHPSSYGAQLGGLSD----------GYGAGGAGPGPYPPQHPPYGNEQTASF 152
Q G + + G LS GY G G Y H YG E +
Sbjct: 115 QEADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSLA 172
Query: 153 APAYADLLSE---DKETPC--PSEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPSGL 206
Y + LS + C P+ + A+TFDWMKVKRNPPKT KV E G LG P+ +
Sbjct: 173 LATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAV 232
Query: 207 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEG 266
RTNFTT+QLTELEKEFHFNKYL+RARRVEIAA+L+LNETQVKIWFQNRRMKQKKRE+ EG
Sbjct: 233 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREK-EG 291
Query: 267 RVP--PAPPGCPKEAAGDASDQSTCTSPEASPSSVTS 301
+P PA P E A ++S++S+ + SP S TS
Sbjct: 292 LLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTS 328
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 153 bits (387), Expect = 2e-37
Identities = 132/333 (39%), Positives = 163/333 (48%), Gaps = 52/333 (15%)
Query: 6 MNSFLEYPLCNR-GPSAYSAHSAPTSFPPSSAQAVDSY-ASEGRYGGGLSSPAFQQNSGY 63
M+S+LEY C+ G S F S A+ V A G G +
Sbjct: 1 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLPLAAAR 60
Query: 64 PAQQPPSTLGVPF--PSSAPS------------GYAPAACSPSY-------GPSQYYP-- 100
P+ PP+ P P +AP G APAA + GP+ +P
Sbjct: 61 PSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGV 120
Query: 101 LGQSEGDGG-YFHPSSYGAQLGG---LSDG---YGAGGAGPGPYPP-------QHPPYGN 146
LG++ DGG + H ++ GG L G Y A G PGP+P HP G
Sbjct: 121 LGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGE-PGPFPACLKASADGHP--GA 177
Query: 147 EQTASFAPA-YADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSG 205
QTAS AP Y +S P TF+WMKVKRN K K++E G SPS
Sbjct: 178 FQTASPAPGTYPKSVSPASGLPAAFS-------TFEWMKVKRNASKKGKLAEYGAASPSS 230
Query: 206 -LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264
+RTNF+T+QLTELEKEFHFNKYL+RARR+EIA L LN+TQVKIWFQNRRMKQKKRER
Sbjct: 231 AIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKRER- 289
Query: 265 EGRVPPAPPGCPKEAAGDASDQSTCTSPEASPS 297
EG + A P P + + + SPS
Sbjct: 290 EGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPS 322
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 110 bits (274), Expect = 2e-24
Identities = 97/284 (34%), Positives = 122/284 (42%), Gaps = 60/284 (21%)
Query: 20 SAYSAHS--APTSFPPSSAQAVDSYASE---GRYGGGLSSPAFQQNSGYPAQQPPSTLGV 74
S+Y +S FPP Y E YGGG FQ YP P
Sbjct: 4 SSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPR---PDFGEQ 60
Query: 75 PFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGP 134
PF S P P + P+ G +G + GG Y A G P
Sbjct: 61 PFGGSGPG---PGSALPARG---------------------HGQEPGGPGGHYAAPGE-P 95
Query: 135 GPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKR----NPP 190
P PP PP A A A S+ K+ P + P A + WMK NP
Sbjct: 96 CPAPPAPPP------APLPGARAYSQSDPKQPPSGTALKQP-AVVYPWMKKVHVNSVNPN 148
Query: 191 KTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIW 250
T G P RT +T +Q+ ELEKEFHFN+YL+R RR+EIA TL L+E Q+KIW
Sbjct: 149 YTG-------GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIW 201
Query: 251 FQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEA 294
FQNRRMK KK + ++P K + +S S+C+S A
Sbjct: 202 FQNRRMKWKK----DHKLPNT-----KGRSSSSSSSSSCSSSVA 236
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 107 bits (268), Expect = 1e-23
Identities = 69/155 (44%), Positives = 80/155 (51%), Gaps = 29/155 (18%)
Query: 167 PCPSEPNTPTARTFDWMKVKRNP-----------PKTAKVSEPGLGSPSG---------- 205
P P P P A F WMK K++ P + V G+GSP+
Sbjct: 82 PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141
Query: 206 ----LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 261
LRT +T QL ELEKEFHFNKYL R RRVEIAA L+L E QVK+WFQNRRMK KR
Sbjct: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH-KR 200
Query: 262 EREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASP 296
+ + P P CP A D D + P ASP
Sbjct: 201 QTQHREPPDGEPACP-GALEDICDPA--EEPAASP 232
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 104 bits (260), Expect = 8e-23
Identities = 92/264 (34%), Positives = 115/264 (43%), Gaps = 48/264 (18%)
Query: 32 PPSSAQAVDSYASEGRYGG----------GLSSPAFQQNSGYPAQQPPSTLGVPFPSSAP 81
P + Q Y + G +GG G S+P + YP S+L +P SA
Sbjct: 13 PECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTP----HQPYPPPAAASSLDTDYPGSAC 68
Query: 82 SGY------APAACSPSYGPSQYYP-LGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGP 134
S APA S P G S+G GG G+Q GL+ P
Sbjct: 69 SIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGG-------GSQPPGLNSEQQP--PQP 119
Query: 135 GPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPN-TPTARTFDWMKVKRNPPKTA 193
P PP PP PA + K P S + T + + F WMK R K
Sbjct: 120 PPPPPTLPPSSPTNPGGGVPA-----KKPKGGPNASSSSATISKQIFPWMKESRQNSKQK 174
Query: 194 KV-----------SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 242
S PG S +RT +T+ QL ELEKEFHFN+YL R RRVE+A L L
Sbjct: 175 NSCATAGESCEDKSPPGPASKR-VRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL 233
Query: 243 NETQVKIWFQNRRMKQKKREREEG 266
E Q+KIWFQNRRMK KK ++ +G
Sbjct: 234 TERQIKIWFQNRRMKYKKDQKAKG 257
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 102 bits (254), Expect = 4e-22
Identities = 69/175 (39%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 132 AGPGPYPPQHPPYGNEQT--ASFAPAYADLLSEDKETPCPSEP------NTPTA--RTFD 181
A P P PPQ P T A P+ A P P+ N+PT + F
Sbjct: 98 APPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFP 157
Query: 182 WMKVKRNPPK------------TAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLS 229
WMK R K S PG S RT +T+ QL ELEKEFHFN+YL
Sbjct: 158 WMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLC 217
Query: 230 RARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGRV----------PPAPPG 274
R RRVE+A L L E Q+KIWFQNRRMK KK ++ +G + P PPG
Sbjct: 218 RPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 102 bits (254), Expect = 4e-22
Identities = 69/175 (39%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 132 AGPGPYPPQHPPYGNEQT--ASFAPAYADLLSEDKETPCPSEP------NTPTA--RTFD 181
A P P PPQ P T A P+ A P P+ N+PT + F
Sbjct: 98 APPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFP 157
Query: 182 WMKVKRNPPK------------TAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLS 229
WMK R K S PG S RT +T+ QL ELEKEFHFN+YL
Sbjct: 158 WMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLC 217
Query: 230 RARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGRV----------PPAPPG 274
R RRVE+A L L E Q+KIWFQNRRMK KK ++ +G + P PPG
Sbjct: 218 RPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 102 bits (254), Expect = 4e-22
Identities = 100/310 (32%), Positives = 125/310 (40%), Gaps = 52/310 (16%)
Query: 31 FPPSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQ----------------QPPSTLGV 74
FPP A S S G GG P +QQ P Q +P ++
Sbjct: 17 FPPFEEYAQHS-GSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYA 75
Query: 75 PFPSSAPSGYAPAACSPSYGPSQY-YPLGQSEG--DGGYFHPSSYGAQLGGLSDGYGAGG 131
P + P+ Y AA P++G + YP G G G P AQ G + G A
Sbjct: 76 PRTAREPA-YPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASH 134
Query: 132 AG----PGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPS--EPNTPTAR------T 179
P P P+ P + APA + + CP +P
Sbjct: 135 VLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVV 194
Query: 180 FDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAAT 239
+ WMK + S G G P RT +T +Q+ ELEKEFHFN+YL+R RR+EIA T
Sbjct: 195 YPWMK--KIHVSAVNPSYNG-GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHT 251
Query: 240 LELNETQVKIWFQNRRMKQKK---------REREEGRVPPAPPGCPKEAAGDASDQSTCT 290
L L+E QVKIWFQNRRMK KK R PP G A QS
Sbjct: 252 LCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPP-------GKAQTQSPHL 304
Query: 291 SPEASPSSVT 300
P PS+ T
Sbjct: 305 HPHPHPSTST 314
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 100 bits (249), Expect = 2e-21
Identities = 93/286 (32%), Positives = 121/286 (42%), Gaps = 43/286 (15%)
Query: 19 PSAYSAHSAPTSFPPSSAQAVDSYASEGRYGG--GLSSPAFQQNSGYPAQQPPSTLGVPF 76
P A SA SAP + S A A G GG G +S + S P P L
Sbjct: 18 PRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAES 77
Query: 77 PSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGG-------YFHP--------SSYGAQLG 121
PS P A C+ P G G GG + HP ++ A G
Sbjct: 78 PS--PPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAG 135
Query: 122 GLSDGYGAGGAGPGPYPPQ------HPPYGNEQTASFAP--------AYADLLSEDKETP 167
GL+ G GGA G P HP YG A+ A +Y+ +
Sbjct: 136 GLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPA 195
Query: 168 CPSEPNTPTARTFD---WMKVK-------RNPPKTAKVSEPGLGSPSGLRTNFTTRQLTE 217
P++P A TF W++ + P ++ LG RT FT++QL E
Sbjct: 196 HPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLE 255
Query: 218 LEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 263
LE +F NKYLSR +R E+A +L L ETQVKIWFQNRRMK K+ ++
Sbjct: 256 LEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 98.2 bits (243), Expect = 8e-21
Identities = 86/271 (31%), Positives = 116/271 (42%), Gaps = 50/271 (18%)
Query: 31 FPPSSAQAVDSYASEG--RYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAA 88
FPP + +SY E Y G FQ + PP P PS Y+
Sbjct: 17 FPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP-----PRPSYPERQYS--- 68
Query: 89 CSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQ 148
C+ GP G G+ HP + L + GA P P PP ++
Sbjct: 69 CTSLQGPGN--SRGHGPAQAGHHHPEKSQS----LCEPAPLSGASASPSPA--PPACSQ- 119
Query: 149 TASFAPAYADLLSEDKETPCPSEPNTPTAR---TFDWMKVKRNPPKTAKVSEPGLGSPSG 205
P P P++ ++ + WMK + T + G G P
Sbjct: 120 ------------------PAPDHPSSAASKQPIVYPWMK--KIHVSTVNPNYNG-GEPKR 158
Query: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER-E 264
RT +T +Q+ ELEKEFH+N+YL+R RR+EIA +L L+E Q+KIWFQNRRMK KK R
Sbjct: 159 SRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLP 218
Query: 265 EGRVPPAPPGCPKEAAGDASDQSTCTSPEAS 295
+V APP AG A + +P S
Sbjct: 219 NTKVRSAPP------AGAAPSTLSAATPGTS 243
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 98.2 bits (243), Expect = 8e-21
Identities = 86/271 (31%), Positives = 116/271 (42%), Gaps = 50/271 (18%)
Query: 31 FPPSSAQAVDSYASEG--RYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAA 88
FPP + +SY E Y G FQ + PP P PS Y+
Sbjct: 17 FPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP-----PRPSYPERQYS--- 68
Query: 89 CSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQ 148
C+ GP G G+ HP + L + GA P P PP ++
Sbjct: 69 CTSLQGPGN--SRGHGPAQAGHHHPEKSQS----LCEPAPLSGASASPSPA--PPACSQ- 119
Query: 149 TASFAPAYADLLSEDKETPCPSEPNTPTAR---TFDWMKVKRNPPKTAKVSEPGLGSPSG 205
P P P++ ++ + WMK + T + G G P
Sbjct: 120 ------------------PAPDHPSSAASKQPIVYPWMK--KIHVSTVNPNYNG-GEPKR 158
Query: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER-E 264
RT +T +Q+ ELEKEFH+N+YL+R RR+EIA +L L+E Q+KIWFQNRRMK KK R
Sbjct: 159 SRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLP 218
Query: 265 EGRVPPAPPGCPKEAAGDASDQSTCTSPEAS 295
+V APP AG A + +P S
Sbjct: 219 NTKVRSAPP------AGAAPSTLSAATPGTS 243
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 97.8 bits (242), Expect = 1e-20
Identities = 78/220 (35%), Positives = 97/220 (44%), Gaps = 59/220 (26%)
Query: 131 GAGPGPY--PPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEP--------NTPTARTF 180
G P P PP PP S AP A S + P S P +T T + F
Sbjct: 77 GLAPEPLSAPPGSPP------PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIF 130
Query: 181 DWMK-------VKRNPPKTAK----------------------------VSEPGLGSPSG 205
WMK +K N P TA+ S PG +
Sbjct: 131 PWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKR 190
Query: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREE 265
RT +T+ QL ELEKEFHFN+YL R RRVE+A L L+E Q+KIWFQNRRMK KK ++ +
Sbjct: 191 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK 250
Query: 266 GRVP----PAPPGCP----KEAAGDASDQSTCTSPEASPS 297
G P+P G P + AG + + T SPS
Sbjct: 251 GLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPS 290
Score = 33.5 bits (75), Expect = 0.24
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 27 APTSFPPSSAQAVDSY---ASEGRYGGGL--SSPAFQQNSGY----PAQQPPSTLGVPFP 77
AP +PP+ A + + A+ G YG SP + GY P PS G+
Sbjct: 317 APQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHL 376
Query: 78 SSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGA 118
S PSG +P PSQ++ G E Y SS+ A
Sbjct: 377 SHHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHA 415
Score = 31.6 bits (70), Expect = 0.90
Identities = 46/154 (29%), Positives = 54/154 (35%), Gaps = 23/154 (14%)
Query: 15 CNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGV 74
C R A SAP PP SA A S S GGG S SG P P + +
Sbjct: 73 CMRPGLAPEPLSAPPGSPPPSA-APTSATSNSSNGGGPS------KSGPPKCGPGTNSTL 125
Query: 75 P---FPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGG 131
FP S + S G ++ G G GG GG S G G GG
Sbjct: 126 TKQIFPWMKESRQTSKLKNNSPGTAE--GCGGGGGGGG-----------GGGSGGSGGGG 172
Query: 132 AGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKE 165
G G P + A A A L+ +KE
Sbjct: 173 GGGGGGDKSPPGSAASKRARTAYTSAQLVELEKE 206
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 97.4 bits (241), Expect = 1e-20
Identities = 81/260 (31%), Positives = 116/260 (44%), Gaps = 24/260 (9%)
Query: 39 VDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQY 98
V Y S R+ GGL+ QN P Q P G ++A + A + S GPS
Sbjct: 11 VSMYPSSVRHSGGLNLAP--QNFVSPPQYPD--YGGYHVAAAAAAAANLDSAQSPGPSWP 66
Query: 99 YPLGQS-EGDGGYFHPSSYGAQLGGLSDGYGAGG-------AGPGPYPPQHPPYGNEQTA 150
G D + P A ++ G G + P Y P H P+ +
Sbjct: 67 AAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHP 126
Query: 151 SFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPK-TAKVSEPGLGSPSGLRTN 209
+ AP+ A L + P T A +RN + K ++ LGS RT
Sbjct: 127 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTK 186
Query: 210 ------FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ----- 258
+T Q ELEKEFH+++Y++ R+ E+AATL L+E QVKIWFQNRR K+
Sbjct: 187 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
Query: 259 KKREREEGRVPPAPPGCPKE 278
KK ++++ + PP PP P +
Sbjct: 247 KKLQQQQQQQPPQPPPPPPQ 266
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 96.7 bits (239), Expect = 2e-20
Identities = 75/229 (32%), Positives = 107/229 (46%), Gaps = 34/229 (14%)
Query: 63 YPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQ-SEGDGGYFHPSSYGAQLG 121
YP P++LG+ P Y P A P+ P QY S + P+++GA
Sbjct: 14 YPGPARPASLGL-----GPQAYGPPAPPPA--PPQYPDFSSYSHVEPAPAPPTAWGAPFP 66
Query: 122 GLSDGYGAGGAGPGPYPPQHPP----YGNEQTASFAPAYAD----LLSEDKETP-CPSEP 172
D + A GPGP P P +G S PA LL++ P PS P
Sbjct: 67 APKDDWAAA-YGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSP 125
Query: 173 NTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTN------FTTRQLTELEKEFHFNK 226
++WM+ V+ G G RT +T Q ELEKEFH+++
Sbjct: 126 GAQRPTPYEWMR--------RSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSR 177
Query: 227 YLSRARRVEIAATLELNETQVKIWFQNRRMKQKK--REREEGRVPPAPP 273
Y++ R+ E+AA L L E QVKIWFQNRR K++K +++++ + PP PP
Sbjct: 178 YITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPP 226
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 95.5 bits (236), Expect = 5e-20
Identities = 85/268 (31%), Positives = 115/268 (42%), Gaps = 29/268 (10%)
Query: 6 MNSFLEYPLCNRGPSA--YSAHSAPTSFPPSSAQAVDSYASEGRYG---GGLSSPAFQQN 60
M+S+ C R P+ Y H+ S + GRYG G+ +
Sbjct: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
Query: 61 SGYPAQQPPSTLGVPFPSSAP-----SGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSS 115
SG+ + S+AP S A + SP P + S G S
Sbjct: 61 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSD-----SH 115
Query: 116 YGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQTASF-APAYADLLSEDKETPCPSEPNT 174
+G + LS+ GA + G A APA ++ S E P P+ P
Sbjct: 116 HGGK-NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSE-PSPAPPAQ 173
Query: 175 PTARTFDWMKVKRNPPKTAKVSEPGLGSPSG--LRTNFTTRQLTELEKEFHFNKYLSRAR 232
P + + WM+ +S +G P G RT +T Q ELEKEFHFN+YL+R R
Sbjct: 174 P--QIYPWMR-------KLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRR 224
Query: 233 RVEIAATLELNETQVKIWFQNRRMKQKK 260
R+EIA L L+E Q+KIWFQNRRMK KK
Sbjct: 225 RIEIAHALCLSERQIKIWFQNRRMKWKK 252
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 94.4 bits (233), Expect = 1e-19
Identities = 84/258 (32%), Positives = 110/258 (42%), Gaps = 47/258 (18%)
Query: 52 LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYF 111
++ +F NS Y + P P + S Y P+ SP Y Y GQ + +
Sbjct: 1 MAMSSFLINSNYVDPKFP-----PCEEYSQSDYLPSDHSPGY-----YAGGQRR-ESSFQ 49
Query: 112 HPSSYGAQLGGLSDGYGA-----GGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKET 166
+ +G + Y A P P PP PP G A P LL E +
Sbjct: 50 PEAGFGRRAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQR 109
Query: 167 -----------PCPSEPNTPTAR--------TFDWMKVKRNPPKTAKVSEPGLGSPSGLR 207
PC P P+ + WM+ + T + G G P R
Sbjct: 110 CEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMR--KVHVSTVNPNYAG-GEPKRSR 166
Query: 208 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK------- 260
T +T +Q+ ELEKEFH+N+YL+R RRVEIA L L+E Q+KIWFQNRRMK KK
Sbjct: 167 TAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNT 226
Query: 261 REREEGRVPPA--PPGCP 276
+ R G A PPG P
Sbjct: 227 KIRSGGAAGSAGGPPGRP 244
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 92.0 bits (227), Expect = 6e-19
Identities = 59/153 (38%), Positives = 76/153 (49%), Gaps = 33/153 (21%)
Query: 134 PGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTA 193
P P HP +G +PA + + +P P+ P + WMK K+ KTA
Sbjct: 57 PSLNPGSHPRHGAGGRPKPSPAGS------RGSPVPAGALQPPE--YPWMKEKKAAKKTA 108
Query: 194 -------------------------KVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYL 228
++++ G LRT +T QL ELEKEFHFNKYL
Sbjct: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYL 168
Query: 229 SRARRVEIAATLELNETQVKIWFQNRRMKQKKR 261
R RRVEIAA L+L E QVK+WFQNRRMK K++
Sbjct: 169 CRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 91.7 bits (226), Expect = 7e-19
Identities = 75/222 (33%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 75 PFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDG--GYFHPS-SYGAQLGGLSDGYGAGG 131
PFP P P C+ LG S G GYF S +YG G S G GA
Sbjct: 190 PFPRGPP----PDGCA----------LGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQ 235
Query: 132 AGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPT-------------AR 178
G GP+P Q P G + + A AD +++ P P A
Sbjct: 236 LGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHAS 295
Query: 179 TFDWMKVKRNPPKTAKVS--EPGLGSPSG--------------LRTNFTTRQLTELEKEF 222
+ ++ P +++K S + LG+ G R +T Q ELEKEF
Sbjct: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEF 355
Query: 223 HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 264
FN YL+R RR+EI+ ++ L + QVKIWFQNRRMK KK RE
Sbjct: 356 LFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 397
Score = 28.9 bits (63), Expect = 5.8
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 32 PPSSAQAVDSYASEGR--YGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAAC 89
P +++ VDS S GR GGG GY A GV P +A Y +C
Sbjct: 24 PAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHG-----GVYLPPAADLPYGLQSC 78
Query: 90 S--PSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYP 138
P+ G + G GG GGL G G G GP P
Sbjct: 79 GLFPTLGGKRNEAASPGSGGGG-----------GGL----GPGAHGYGPSP 114
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/89 (52%), Positives = 56/89 (62%), Gaps = 10/89 (11%)
Query: 196 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 255
S PG S RT +T+ QL ELEKEFHFN+YL R RRVE+A L L E Q+KIWFQNRR
Sbjct: 26 SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 85
Query: 256 MKQKKREREEGRV----------PPAPPG 274
MK KK ++ +G + P PPG
Sbjct: 86 MKYKKDQKGKGMLTSSGGQSPSRSPVPPG 114
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 89.0 bits (219), Expect = 5e-18
Identities = 68/204 (33%), Positives = 84/204 (41%), Gaps = 42/204 (20%)
Query: 113 PSSYGAQLGGLSDGYGAGGAG-----PGPYPPQHP---------------PYGNEQTASF 152
P+S GYGAG PG Y P YGN AS+
Sbjct: 26 PTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFASGYGLGADAYGNLPCASY 85
Query: 153 APAYADLLSEDKETPCPSEPN-------TPTARTFDWMKVKRNPPKTAKVSEPGLGSPSG 205
L S+ + C R + WM+ K
Sbjct: 86 DQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMRSSGPDRKRG------------ 133
Query: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREE 265
R +T Q ELEKEFHFN+YL+R RR+EIA L L E Q+KIWFQNRRMK KK ++E
Sbjct: 134 -RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDE 192
Query: 266 GRVPPAPP--GCPKEAAGDASDQS 287
G A P P AA A+D++
Sbjct: 193 GPTAAAAPEGAVPSAAATAAADKA 216
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 89.0 bits (219), Expect = 5e-18
Identities = 74/212 (34%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 70 STLGVPFPSSAPS--GYAPAACSPSYGPSQYYPL--GQSEGDGGYFHPSSYGAQLGGLSD 125
ST V S S G P S P ++YP G G F SSY GG
Sbjct: 8 STFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGG--- 64
Query: 126 GYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADL------------LSEDKETPCPSEPN 173
G G A P Y P P + E+ ++ A + AD ++DK +E
Sbjct: 65 --GYGRAAPCDYGPA-PAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQ 121
Query: 174 TPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLR--TNFTTRQLTELEKEFHFNKYLSRA 231
+ + WM+ + + G PSG R +T Q ELEKEFH+N+YL+R
Sbjct: 122 KCSTPVYPWMQ------RMNSCNSSSFG-PSGRRGRQTYTRYQTLELEKEFHYNRYLTRR 174
Query: 232 RRVEIAATLELNETQVKIWFQNRRMKQKKRER 263
RR+EIA L L E Q+KIWFQNRRMK KK +
Sbjct: 175 RRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 87.4 bits (215), Expect = 1e-17
Identities = 76/239 (31%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 61 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL 120
S YPA G FP +A P YG G G F S G
Sbjct: 12 SKYPASSSVFATGA-FPEQTSCAFASNPQRPGYGA----------GSGASFAASMQGLYP 60
Query: 121 GGLSDGYGAGGAGPGPYPPQH---PPYGNEQTASFAP----------AYADLLSEDKETP 167
GG G AG + G Y + P N A F A A E +++
Sbjct: 61 GG---GGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSD 117
Query: 168 CPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKY 227
+E N R + WM+ K R +T Q ELEKEFH+N+Y
Sbjct: 118 LAAESNF---RIYPWMRSSGTDRKRG-------------RQTYTRYQTLELEKEFHYNRY 161
Query: 228 LSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQ 286
L+R RR+EIA TL L E Q+KIWFQNRRMK KK + G PG + +A ++
Sbjct: 162 LTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAG------PGTTGQDRAEAEEE 214
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 85.1 bits (209), Expect = 7e-17
Identities = 89/298 (29%), Positives = 119/298 (39%), Gaps = 77/298 (25%)
Query: 6 MNSFLEYPLCNRGPSAYSAHSA------PTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQ 59
M+S+ PL ++ +A +A +A PT + A V GR+ ++
Sbjct: 1 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVG-----GRHAAAAAALQLYG 55
Query: 60 NS--GYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGG-YFHPSSY 116
NS G+P PP P PS PSG C G EG G YFHP
Sbjct: 56 NSAAGFP-HAPPQAHAHPHPSPPPSG---TGC------------GGREGRGQEYFHPG-- 97
Query: 117 GAQLGGLSDGYGAGGAGPGPYPPQHPP----------------YGNE----------QTA 150
GG P P+PP PP YG + Q
Sbjct: 98 ----GGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQE 153
Query: 151 SFAPAYADLLSEDK---ETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLR 207
+ Y D S E P ++ ++ F WM+ + P G G +
Sbjct: 154 AELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAP-----------GRRRGRQ 202
Query: 208 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREE 265
T ++ Q ELEKEF FN YL+R RR+E++ L L E QVKIWFQNRRMK KK ++
Sbjct: 203 T-YSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKD 259
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 84.0 bits (206), Expect = 2e-16
Identities = 77/235 (32%), Positives = 100/235 (42%), Gaps = 53/235 (22%)
Query: 65 AQQPPSTLGVPFPSSAPSGYAP------AACSPSYG---PSQYYPLGQSEG----DGGYF 111
++QP + FPS + AP A SP PS Y+P Q +G + Y
Sbjct: 36 SRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYL 95
Query: 112 HPSSYGAQLGGLSDGYGAGGA-------GPGPYPPQHPP-YGNEQTA-------SFAPAY 156
A G + G G PG Q P Y E +A + P Y
Sbjct: 96 RTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGY 155
Query: 157 ADLL----SEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTT 212
D SEDKE P + P+ +W+ + + K R +T
Sbjct: 156 GDNKICEGSEDKERPDQTNPSA------NWLHARSSRKK---------------RCPYTK 194
Query: 213 RQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGR 267
Q ELEKEF FN YL+R RR E+A L L+E QVKIWFQNRRMK KK +E+G+
Sbjct: 195 YQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGK 249
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 82.4 bits (202), Expect = 4e-16
Identities = 67/203 (33%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 72 LGVPFPSSAPSGY---APAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYG 128
L + FP APS A +P P + P+ A G + G
Sbjct: 45 LSITFPPPAPSNSLHGVDMAANPRAHPDR---------------PACSAAAAPGHAPGRD 89
Query: 129 -AGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTA--RTFDWM-K 184
A PG Y + E+ A + ++ E +T P+ + P A + + WM K
Sbjct: 90 EAAPLNPGMYSQKAARPALEERAKSS---GEIKEEQAQTGQPAGLSQPPAPPQIYPWMTK 146
Query: 185 VKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNE 244
+ + K S RT++T Q ELEKEFHFN+YL+R RR+EIA L LNE
Sbjct: 147 LHMSHETDGKRS----------RTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNE 196
Query: 245 TQVKIWFQNRRMKQKKREREEGR 267
Q+KIWFQNRRMK KK + + +
Sbjct: 197 RQIKIWFQNRRMKWKKDSKMKSK 219
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 81.6 bits (200), Expect = 8e-16
Identities = 78/245 (31%), Positives = 100/245 (40%), Gaps = 60/245 (24%)
Query: 51 GLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGP--SQYYPLGQSEGDG 108
G S PA ++ G P T P P++A S + ++ S S ++ +S+G
Sbjct: 148 GPSGPANGRHYGIK----PETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSS 203
Query: 109 G------YFHPSSYGAQLGGLSDGYGAG---GAGPGPYPP---QHPPYGNEQTASFAPAY 156
G F A GG G G G G G P HP G
Sbjct: 204 GPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPG----------- 252
Query: 157 ADLLSEDKETPCPSE----PNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTT 212
L E+K+ P + PN P A +W+ + K R +T
Sbjct: 253 CSLKEEEKQHSQPQQQQLDPNNPAA---NWIHARSTRKK---------------RCPYTK 294
Query: 213 RQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGRVPPAP 272
Q ELEKEF FN YL+R RR E+A L L E QVKIWFQNRRMK KK +E+
Sbjct: 295 YQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK------- 347
Query: 273 PGCPK 277
CPK
Sbjct: 348 --CPK 350
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 81.6 bits (200), Expect = 8e-16
Identities = 79/264 (29%), Positives = 103/264 (39%), Gaps = 37/264 (14%)
Query: 20 SAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSS 79
S+Y +S +P + +Y S G PA Y L V S+
Sbjct: 2 SSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSSA 61
Query: 80 APSGYAPAACSPSY--GPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPY 137
+ S + S P+Q Q+ P S G + GA P
Sbjct: 62 SSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGD------SHGAKPSAS 115
Query: 138 PPQHPPYGNEQTASFAPA-YADLLSEDKET-------------PCP-----SEPNTPTAR 178
P +A+F A SE +E P P + P T +
Sbjct: 116 SPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQ 175
Query: 179 TFDWMKVKRNPPKTAKVSEPGLGSPSG--LRTNFTTRQLTELEKEFHFNKYLSRARRVEI 236
F WM+ +S G P G RT +T Q ELEKEFHFN+YL+R RR+EI
Sbjct: 176 IFPWMR-------KLHISHDMTG-PDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEI 227
Query: 237 AATLELNETQVKIWFQNRRMKQKK 260
A L L+E Q+KIWFQNRRMK KK
Sbjct: 228 AHALCLSERQIKIWFQNRRMKWKK 251
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 80.9 bits (198), Expect = 1e-15
Identities = 71/206 (34%), Positives = 81/206 (39%), Gaps = 43/206 (20%)
Query: 63 YPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGG 122
Y +QPP PFP + G P P + PL H AQL
Sbjct: 37 YMGRQPPPPPPHPFPGAL--GALEQGSPPDISPYEVPPLADDPAVAHLHH--HLPAQLAL 92
Query: 123 LSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDW 182
P+PP P E E EPN F W
Sbjct: 93 -------------PHPPAGP-----------------FPEGAEPGVLEEPNR-VQLPFPW 121
Query: 183 MKV------KRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI 236
MK K A +EP + RT +T QL ELEKEF FNKY+SR RRVE+
Sbjct: 122 MKSTKAHAWKGQWAGGAYAAEPEENKRT--RTAYTRAQLLELEKEFLFNKYISRPRRVEL 179
Query: 237 AATLELNETQVKIWFQNRRMKQKKRE 262
A L L E +KIWFQNRRMK KK E
Sbjct: 180 AVMLNLTERHIKIWFQNRRMKWKKEE 205
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 80.5 bits (197), Expect = 2e-15
Identities = 63/173 (36%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 141 HPPYGNEQTA-----SFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKV 195
H P G + +A + PA A + +T P P R F + V
Sbjct: 92 HAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYP----LPDPRQFHCISVDS-------- 139
Query: 196 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 255
S L S +RT FT+ QL ELE+EF N YLSR RR+EIA L L+E QVKIWFQNRR
Sbjct: 140 SSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRR 199
Query: 256 MKQKKREREE----------GRVPPAPPGCPKEAAGDASDQSTCTSPEASPSS 298
+K KK + G AP GC + A SPSS
Sbjct: 200 VKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSS 252
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,519,169
Number of Sequences: 37866
Number of extensions: 1049744
Number of successful extensions: 7135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 469
Number of HSP's that attempted gapping in prelim test: 5503
Number of HSP's gapped (non-prelim): 1823
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.