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Search of human proteins with 24497517
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497517 homeobox A5 [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497517 homeobox A5 [Homo sapiens] 559 e-159
gi|4504469 homeobox B5 [Homo sapiens] 316 1e-86
gi|11321638 homeobox C5 [Homo sapiens] 186 1e-47
gi|13273315 homeobox B4 [Homo sapiens] 159 2e-39
gi|24497538 homeobox C4 [Homo sapiens] 155 4e-38
gi|24497540 homeobox C4 [Homo sapiens] 155 4e-38
gi|148613882 homeobox A4 [Homo sapiens] 152 2e-37
gi|23397672 homeobox D4 [Homo sapiens] 150 9e-37
gi|23503237 homeobox B6 [Homo sapiens] 144 6e-35
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 142 3e-34
gi|13489077 homeobox A6 [Homo sapiens] 138 6e-33
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 137 1e-32
gi|24497556 homeobox A7 [Homo sapiens] 136 2e-32
gi|85068580 homeobox B7 [Homo sapiens] 131 5e-31
gi|15029506 homeobox D8 [Homo sapiens] 122 4e-28
gi|13273317 homeobox B8 [Homo sapiens] 115 4e-26
gi|24497513 homeobox A3 isoform a [Homo sapiens] 113 2e-25
gi|13562112 homeobox A3 isoform a [Homo sapiens] 113 2e-25
gi|19923391 homeobox D3 [Homo sapiens] 112 3e-25
gi|194363768 homeobox D9 [Homo sapiens] 107 1e-23
gi|12056969 homeobox C8 [Homo sapiens] 107 1e-23
gi|84570137 homeobox B3 [Homo sapiens] 104 9e-23
gi|24497515 homeobox A3 isoform b [Homo sapiens] 101 6e-22
gi|10140847 homeobox A2 [Homo sapiens] 100 2e-21
gi|182765442 homeobox A10 isoform a [Homo sapiens] 99 5e-21
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 98 9e-21
gi|4885127 caudal type homeobox 4 [Homo sapiens] 97 1e-20
gi|24497526 homeobox B1 [Homo sapiens] 96 4e-20
gi|24497533 homeobox C10 [Homo sapiens] 94 1e-19
gi|24497547 homeobox C9 [Homo sapiens] 94 2e-19
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 559 bits (1440), Expect = e-159
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
Sbjct: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
Query: 61 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN 120
SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN
Sbjct: 61 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN 120
Query: 121 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM 180
SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM
Sbjct: 121 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM 180
Query: 181 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK 240
RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK
Sbjct: 181 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK 240
Query: 241 IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 270
IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
Sbjct: 241 IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 270
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 316 bits (810), Expect = 1e-86
Identities = 170/280 (60%), Positives = 200/280 (71%), Gaps = 21/280 (7%)
Query: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
MSSYFVNSF GRYPNGPDYQL NYG SS+S +RD A+MH+G YGY YNGMDLSV RS
Sbjct: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
Query: 61 --SGHFGS-GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG 117
S HFG+ GE +R++ A A EPR+ Q A+S P+ LPC+ DSH
Sbjct: 61 ASSSHFGAVGESSRAFPAPAQ----EPRFRQAASSCSLSSPESLPCT------NGDSHGA 110
Query: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSP------APP 171
++ S S A++ + S + + + +S EE A S + A+++P P AP
Sbjct: 111 KPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPE 170
Query: 172 AQ-PQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH 230
Q PQI+PWMRKLHISHD + GP+GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH
Sbjct: 171 GQTPQIFPWMRKLHISHD-MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAH 229
Query: 231 ALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP 270
ALCLSERQIKIWFQNRRMKWKKDNKLKSMS+A AG AF+P
Sbjct: 230 ALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 186 bits (473), Expect = 1e-47
Identities = 118/263 (44%), Positives = 147/263 (55%), Gaps = 50/263 (19%)
Query: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSV---- 56
MSSY NSF + PN P Y + G++ S SE + + RY YG G+DLS+
Sbjct: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASE-------VQASRYCYG--GLDLSITFPP 51
Query: 57 -GRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSH 115
S S H AA+ A P P S A H+P D A +PG S
Sbjct: 52 PAPSNSLH------GVDMAANPRAHPDRPACSAAAAPGHAPGRD----EAAPLNPGMYSQ 101
Query: 116 HGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQ 175
+ +L + +SG ++ A + Q + S+P PA PQ
Sbjct: 102 KAARPALEERA------------------KSSGEIKEEQAQTGQPAGLSQP----PAPPQ 139
Query: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
IYPWM KLH+SH+ +GKR+RT+YTRYQTLELEKEFHFNRYLTRRRRIEIA+ LCL+
Sbjct: 140 IYPWMTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195
Query: 236 ERQIKIWFQNRRMKWKKDNKLKS 258
ERQIKIWFQNRRMKWKKD+K+KS
Sbjct: 196 ERQIKIWFQNRRMKWKKDSKMKS 218
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 159 bits (402), Expect = 2e-39
Identities = 97/226 (42%), Positives = 121/226 (53%), Gaps = 21/226 (9%)
Query: 49 YNGMDLSVGRSGSGHFGSGERARSYAASAS-----AAPAEPRYSQPATSTHSPQPDPLPC 103
Y+ D G++ G+R S + AA RY+ A P P P P
Sbjct: 23 YSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAACTVQRYA--ACRDPGPPPPPPPP 80
Query: 104 SAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQ 163
P PG LS + A AG+ + G + + P Q
Sbjct: 81 PPPPPPPG----------LSPRAPAPPPAGA--LLPEPGQRCEAVSSSPPPPPCAQNPLH 128
Query: 164 SEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLT 221
PS + +P +YPWMRK+H+S + N G E KR+RTAYTR Q LELEKEFH+NRYLT
Sbjct: 129 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLT 188
Query: 222 RRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267
RRRR+EIAHALCLSERQIKIWFQNRRMKWKKD+KL + + + G A
Sbjct: 189 RRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA 234
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 155 bits (392), Expect = 4e-38
Identities = 87/179 (48%), Positives = 109/179 (60%), Gaps = 17/179 (9%)
Query: 96 PQPDPLP--------CSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTAS 147
P P P P C+++ PG+ HG + G S + + AS
Sbjct: 54 PPPPPRPSYPERQYSCTSLQ-GPGNSRGHGPAQA-----GHHHPEKSQSLCEPAPLSGAS 107
Query: 148 GAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRY 205
+ AP + Q A PS A QP +YPWM+K+H+S + N G E KR+RTAYTR
Sbjct: 108 ASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
Query: 206 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
Q LELEKEFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKD++L + + +A
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 155 bits (392), Expect = 4e-38
Identities = 87/179 (48%), Positives = 109/179 (60%), Gaps = 17/179 (9%)
Query: 96 PQPDPLP--------CSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTAS 147
P P P P C+++ PG+ HG + G S + + AS
Sbjct: 54 PPPPPRPSYPERQYSCTSLQ-GPGNSRGHGPAQA-----GHHHPEKSQSLCEPAPLSGAS 107
Query: 148 GAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRY 205
+ AP + Q A PS A QP +YPWM+K+H+S + N G E KR+RTAYTR
Sbjct: 108 ASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
Query: 206 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
Q LELEKEFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKD++L + + +A
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 152 bits (385), Expect = 2e-37
Identities = 89/201 (44%), Positives = 109/201 (54%), Gaps = 3/201 (1%)
Query: 70 ARSYAASASAAPAEPR-YSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGA 128
A Y A +A A P Y A+ PQP+ P A P+ G + H + L
Sbjct: 87 AALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQP 146
Query: 129 SADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHD 188
A + T + + A P +P +YPWM+K+H+S
Sbjct: 147 RAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAV 206
Query: 189 N--IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNR 246
N G E KR+RTAYTR Q LELEKEFHFNRYLTRRRRIEIAH LCLSERQ+KIWFQNR
Sbjct: 207 NPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNR 266
Query: 247 RMKWKKDNKLKSMSMAAAGGA 267
RMKWKKD+KL + M ++ A
Sbjct: 267 RMKWKKDHKLPNTKMRSSNSA 287
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 150 bits (380), Expect = 9e-37
Identities = 91/208 (43%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 56 VGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSH 115
+G G+ ++G G + + QP P P P PGS
Sbjct: 29 LGEQGADYYGGGAQGADF--------------QPPGLYPRPDFGEQPFGGSGPGPGSALP 74
Query: 116 HGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPA--- 172
G G H ++ A A AP +A +QS+P P
Sbjct: 75 ARGHGQEPGGPGG-------HYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTAL 127
Query: 173 -QPQI-YPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEI 228
QP + YPWM+K+H++ + N G E KR+RTAYTR Q LELEKEFHFNRYLTRRRRIEI
Sbjct: 128 KQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEI 187
Query: 229 AHALCLSERQIKIWFQNRRMKWKKDNKL 256
AH LCLSERQIKIWFQNRRMKWKKD+KL
Sbjct: 188 AHTLCLSERQIKIWFQNRRMKWKKDHKL 215
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 144 bits (364), Expect = 6e-35
Identities = 80/171 (46%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Query: 108 PSPGSDSHHGGKNSLSNSSG-----ASADAGST--HISSREGVGTASGAEEDAPASSE-- 158
P PG D + + G A D G +E SGA+E P E
Sbjct: 45 PGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPR 104
Query: 159 QASAQSEPSPAPPAQPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKE 213
++ + S + Q +YPWM++++ + + GP G+R R YTRYQTLELEKE
Sbjct: 105 KSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
Query: 214 FHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
FH+NRYLTRRRRIEIAHALCL+ERQIKIWFQNRRMKWKK++KL S S +A
Sbjct: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 142 bits (358), Expect = 3e-34
Identities = 87/199 (43%), Positives = 116/199 (58%), Gaps = 22/199 (11%)
Query: 71 RSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSP-GSDSHHGGKNSLSNSSGAS 129
R ++ +A YS P +SPQ + + S+ P GS+S + K+ LSN
Sbjct: 35 RHFSTYGAAVAQNRIYSTPF---YSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCR--- 88
Query: 130 ADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDN 189
+ G T + +D + + + Q + A QIYPWM++++ SH
Sbjct: 89 --------QNTLGHNTQTSIAQDFSSEQGRTAPQDQK-----ASIQIYPWMQRMN-SHSG 134
Query: 190 IG-GPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRM 248
+G G + +R R Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+ERQIKIWFQNRRM
Sbjct: 135 VGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRM 194
Query: 249 KWKKDNKLKSMSMAAAGGA 267
KWKK++ L S GGA
Sbjct: 195 KWKKESNLTSTLSGGGGGA 213
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 138 bits (347), Expect = 6e-33
Identities = 97/259 (37%), Positives = 127/259 (49%), Gaps = 46/259 (17%)
Query: 1 MSSYFVN-SFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRS 59
MSSYFVN +F G P+G +DS Y GY+ +
Sbjct: 1 MSSYFVNPTFPGSLPSG------------------QDSFLGQLPLYQAGYDAL------- 35
Query: 60 GSGHFGSGERARSYAAS--ASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG 117
R + AS AS+ P + Y+ P S L C+ + G+ +
Sbjct: 36 -----------RPFPASYGASSLP-DKTYTSPCFYQQSNSV--LACNRASYEYGASCFYS 81
Query: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY 177
K+ SGAS + + + + +SS Q A + +Y
Sbjct: 82 DKDL----SGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVY 137
Query: 178 PWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSER 237
PWM++++ + G G+R R YTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+ER
Sbjct: 138 PWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTER 197
Query: 238 QIKIWFQNRRMKWKKDNKL 256
QIKIWFQNRRMKWKK+NKL
Sbjct: 198 QIKIWFQNRRMKWKKENKL 216
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 137 bits (344), Expect = 1e-32
Identities = 70/122 (57%), Positives = 86/122 (70%), Gaps = 3/122 (2%)
Query: 148 GAEEDAPASSEQASAQSEPSPAPP-AQPQIYPWMRKLHISHDNIG-GPEGKRARTAYTRY 205
G + + +S Q +P A QIYPWM++++ SH +G G + +R R Y+RY
Sbjct: 11 GHNTQTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMN-SHSGVGYGADRRRGRQIYSRY 69
Query: 206 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAG 265
QTLELEKEFHFNRYLTRRRRIEIA+ALCL+ERQIKIWFQNRRMKWKK++ L S G
Sbjct: 70 QTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGG 129
Query: 266 GA 267
GA
Sbjct: 130 GA 131
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 136 bits (343), Expect = 2e-32
Identities = 78/161 (48%), Positives = 95/161 (59%), Gaps = 20/161 (12%)
Query: 104 SAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQ 163
S + SP + + G ++ N AS D + S G +E A + +A+ +
Sbjct: 59 SPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFR 118
Query: 164 SEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRR 223
IYPWMR GP+ KR R YTRYQTLELEKEFHFNRYLTRR
Sbjct: 119 ------------IYPWMRS--------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRR 158
Query: 224 RRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
RRIEIAHALCL+ERQIKIWFQNRRMKWKK++K + + AAA
Sbjct: 159 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAA 199
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 131 bits (330), Expect = 5e-31
Identities = 78/197 (39%), Positives = 102/197 (51%), Gaps = 15/197 (7%)
Query: 59 SGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGG 118
+ S F +G + + ++ P P Y + ++ + L PG G
Sbjct: 16 ASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGL-------YPGGGGMAGQ 68
Query: 119 KNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYP 178
+ ++G + S ++ SG A + A Q + A + +IYP
Sbjct: 69 SAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYP 128
Query: 179 WMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 238
WMR G + KR R YTRYQTLELEKEFH+NRYLTRRRRIEIAH LCL+ERQ
Sbjct: 129 WMRS--------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180
Query: 239 IKIWFQNRRMKWKKDNK 255
IKIWFQNRRMKWKK+NK
Sbjct: 181 IKIWFQNRRMKWKKENK 197
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 122 bits (305), Expect = 4e-28
Identities = 75/197 (38%), Positives = 102/197 (51%), Gaps = 20/197 (10%)
Query: 59 SGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP-CSAVAPSPGSDSHHG 117
SG+G G R + Y +PA + P H P P P P C +A G +
Sbjct: 79 SGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIA-CHGEPAKFY 137
Query: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY 177
G ++L + + + + ++ ED P Q+S+ S Q++
Sbjct: 138 GYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGED-PDHLNQSSSPS----------QMF 186
Query: 178 PWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSER 237
PWMR P +R R Y+R+QTLELEKEF FN YLTR+RRIE++HAL L+ER
Sbjct: 187 PWMRPQ-------AAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER 239
Query: 238 QIKIWFQNRRMKWKKDN 254
Q+KIWFQNRRMKWKK+N
Sbjct: 240 QVKIWFQNRRMKWKKEN 256
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 115 bits (288), Expect = 4e-26
Identities = 90/255 (35%), Positives = 114/255 (44%), Gaps = 51/255 (20%)
Query: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
MSSYFVNS +Y G + NY D + GR Y G S
Sbjct: 1 MSSYFVNSLFSKYKTGESLR-PNYYDCGFAQDL--------GGRPTVVY-------GPSS 44
Query: 61 SGHFGSGERARSYAASASAAPAEPRYSQP-ATSTHSPQPDPLPCSAVAPSPGSDSHHGGK 119
G F + + + S+ P P A + H G + G
Sbjct: 45 GGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACH----------------GDPGNFYGY 88
Query: 120 NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW 179
+ L S A + + ASG E+A S E SP+P Q++PW
Sbjct: 89 DPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGS--------EQSPSPT---QLFPW 137
Query: 180 MRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQI 239
MR +R R Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+ERQ+
Sbjct: 138 MRPQ-------AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQV 190
Query: 240 KIWFQNRRMKWKKDN 254
KIWFQNRRMKWKK+N
Sbjct: 191 KIWFQNRRMKWKKEN 205
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 113 bits (282), Expect = 2e-25
Identities = 97/293 (33%), Positives = 133/293 (45%), Gaps = 69/293 (23%)
Query: 4 YFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYG-YGYNGMDLSVGRSGSG 62
Y ++ G YP YQ N +++ + + SA++ G G Y L S G
Sbjct: 7 YDSSAIYGGYP----YQAANGFAYNANQQPYPASAAL--GADGEYHRPACSLQSPSSAGG 60
Query: 63 HFGSGERARSYAASASAAPAEP-------------RYSQPATSTHSPQPDPLPCSAVAPS 109
H + E + + + SA P++P + + PA P P P + AP
Sbjct: 61 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP 120
Query: 110 PGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPA 169
P S S +N+ +N + A+A A+S +
Sbjct: 121 PPS-SASPPQNASNNPTPANA-------------------------------AKSPLLNS 148
Query: 170 PPAQPQIYPWMR------KLHISHDNIG-------GPEG----KRARTAYTRYQTLELEK 212
P QI+PWM+ K S + G P G KRARTAYT Q +ELEK
Sbjct: 149 PTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEK 208
Query: 213 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAG 265
EFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K K M ++ G
Sbjct: 209 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGG 261
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 113 bits (282), Expect = 2e-25
Identities = 97/293 (33%), Positives = 133/293 (45%), Gaps = 69/293 (23%)
Query: 4 YFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYG-YGYNGMDLSVGRSGSG 62
Y ++ G YP YQ N +++ + + SA++ G G Y L S G
Sbjct: 7 YDSSAIYGGYP----YQAANGFAYNANQQPYPASAAL--GADGEYHRPACSLQSPSSAGG 60
Query: 63 HFGSGERARSYAASASAAPAEP-------------RYSQPATSTHSPQPDPLPCSAVAPS 109
H + E + + + SA P++P + + PA P P P + AP
Sbjct: 61 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP 120
Query: 110 PGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPA 169
P S S +N+ +N + A+A A+S +
Sbjct: 121 PPS-SASPPQNASNNPTPANA-------------------------------AKSPLLNS 148
Query: 170 PPAQPQIYPWMR------KLHISHDNIG-------GPEG----KRARTAYTRYQTLELEK 212
P QI+PWM+ K S + G P G KRARTAYT Q +ELEK
Sbjct: 149 PTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEK 208
Query: 213 EFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAG 265
EFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K K M ++ G
Sbjct: 209 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGG 261
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 112 bits (280), Expect = 3e-25
Identities = 81/240 (33%), Positives = 104/240 (43%), Gaps = 38/240 (15%)
Query: 46 GYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSA 105
GYGY+ + +G + Y A+A+ + Y A S S P P
Sbjct: 31 GYGYS--------KTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHK 82
Query: 106 VAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSE 165
A GS G NS G+ ++S + P SS
Sbjct: 83 GAELNGSCMRPGTGNSQGGGGGSQPPG----LNSEQQPPQPPPPPPTLPPSSPTNPGGGV 138
Query: 166 PSPAPPAQP-----------QIYPWMRKLHISHDNIG---------------GPEGKRAR 199
P+ P P QI+PWM++ + GP KR R
Sbjct: 139 PAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVR 198
Query: 200 TAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSM 259
TAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K K +
Sbjct: 199 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGI 258
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 107 bits (267), Expect = 1e-23
Identities = 84/229 (36%), Positives = 105/229 (45%), Gaps = 29/229 (12%)
Query: 43 GRYGYGYNGMDLSVGRSGSG---HFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPD 99
G G G G S G SG H+G R+ A A+AA S + S+ S + +
Sbjct: 134 GGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSS-SSTSLSSSSKRTE 192
Query: 100 PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQ 159
CS S GS NS A+A G+ G G GA SSE
Sbjct: 193 ---CSVARESQGSSGPEFSCNSFLQEKAAAATGGT-------GPGAGIGAATGTGGSSEP 242
Query: 160 ASAQSEPSP-----------APPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTL 208
++ P P + P Q Q+ P + H ++ R YT+YQTL
Sbjct: 243 SACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHAR----STRKKRCPYTKYQTL 298
Query: 209 ELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257
ELEKEF FN YLTR RR E+A L L+ERQ+KIWFQNRRMK KK +K K
Sbjct: 299 ELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
Score = 32.3 bits (72), Expect = 0.45
Identities = 39/172 (22%), Positives = 59/172 (34%), Gaps = 15/172 (8%)
Query: 11 GRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVG---RSGSGHFGS- 66
GR L NY S + + + + G G G G V + + F S
Sbjct: 7 GRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASC 66
Query: 67 --GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGS---------DSH 115
R+ ++AS SA P++P + + + P P P +A A PG
Sbjct: 67 SFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGF 126
Query: 116 HGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPS 167
GG G G + S G G + + A+ A+A S S
Sbjct: 127 PGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTS 178
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 107 bits (267), Expect = 1e-23
Identities = 85/256 (33%), Positives = 110/256 (42%), Gaps = 50/256 (19%)
Query: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
MSSYFVN +Y G S+ + D SVGRS
Sbjct: 1 MSSYFVNPLFSKYKAG-----------ESLEPAYYDCR-------------FPQSVGRSH 36
Query: 61 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN 120
+ +G G A + ++ + S Q +P S G S G
Sbjct: 37 ALVYGPGGSAPGFQHASHHVQDFFHHGTSGISNSGYQQNPCSLSC----HGDASKFYGYE 92
Query: 121 SLSNSS--GASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYP 178
+L S GA +A S A ++ + S PS ++P
Sbjct: 93 ALPRQSLYGAQQEASVVQYPD-----CKSSANTNSSEGQGHLNQNSSPS-------LMFP 140
Query: 179 WMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 238
WMR P + R Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+ERQ
Sbjct: 141 WMRP--------HAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQ 192
Query: 239 IKIWFQNRRMKWKKDN 254
+KIWFQNRRMKWKK+N
Sbjct: 193 VKIWFQNRRMKWKKEN 208
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 104 bits (259), Expect = 9e-23
Identities = 50/75 (66%), Positives = 59/75 (78%)
Query: 191 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 250
G KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK+
Sbjct: 184 GSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKY 243
Query: 251 KKDNKLKSMSMAAAG 265
KKD K K ++ ++ G
Sbjct: 244 KKDQKAKGLASSSGG 258
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 101 bits (252), Expect = 6e-22
Identities = 50/75 (66%), Positives = 58/75 (77%)
Query: 191 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 250
G KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+
Sbjct: 29 GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY 88
Query: 251 KKDNKLKSMSMAAAG 265
KKD K K M ++ G
Sbjct: 89 KKDQKGKGMLTSSGG 103
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 100 bits (248), Expect = 2e-21
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 90 ATSTHSPQ-PDPLPCSAVAPSPGSDSHHGG----KNSLSNSSGASADAGSTHISSREGVG 144
+T +HS P P + + +PGS HG K S + S G+ AG+ +
Sbjct: 40 STLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMK 99
Query: 145 TASGAEEDA--PASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAY 202
A++ A PA++ A+A + P L I+ + GG +R RTAY
Sbjct: 100 EKKAAKKTALLPAAAAAATAAA-------TGPACLSHKESLEIADGSGGG--SRRLRTAY 150
Query: 203 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257
T Q LELEKEFHFN+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + K
Sbjct: 151 TNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 98.6 bits (244), Expect = 5e-21
Identities = 76/246 (30%), Positives = 110/246 (44%), Gaps = 43/246 (17%)
Query: 13 YPNGPDYQLHNYGDHSSVSEQ--FRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERA 70
+P GP G S V FR S + + + GYG G + G+G F +
Sbjct: 191 FPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAK-GYGSGGGGAQ--QLGAGPFPAQPPG 247
Query: 71 RSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASA 130
R + + A ++ + SP P L C + S G + H
Sbjct: 248 RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHA------------- 294
Query: 131 DAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQ-IYPWMRKLHISHDN 189
++S AEE +PA SE + A E ++ + W+
Sbjct: 295 --------------SSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLT-------- 332
Query: 190 IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK 249
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK
Sbjct: 333 --AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMK 390
Query: 250 WKKDNK 255
KK N+
Sbjct: 391 LKKMNR 396
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 97.8 bits (242), Expect = 9e-21
Identities = 53/99 (53%), Positives = 62/99 (62%), Gaps = 9/99 (9%)
Query: 177 YPWMR--KLHISHDNIGG-------PEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 227
+PWM+ K H G E KR RTAYTR Q LELEKEF FN+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
Query: 228 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGG 266
+A L L+ER IKIWFQNRRMKWKK+ K A GG
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGG 217
>gi|4885127 caudal type homeobox 4 [Homo sapiens]
Length = 284
Score = 97.4 bits (241), Expect = 1e-20
Identities = 85/238 (35%), Positives = 108/238 (45%), Gaps = 35/238 (14%)
Query: 51 GMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYS----QPATSTH--------SPQP 98
G D + G G+G GS A ++AA APA Y P+ H SP
Sbjct: 22 GGDGTAGTGGTGGGGSPMPASNFAA----APAFSHYMGYPHMPSMDPHWPSLGVWGSPYS 77
Query: 99 DPLPCSAVAPSPGSDSHHGGKNSLSNSSGA--SAD-------AGSTHISSREGVGTASGA 149
P +V P P S N +++S A S D G T SS G S
Sbjct: 78 PPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLV 137
Query: 150 EEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLE 209
DA A+ + ++S SP Y WMRK E + R YT +Q LE
Sbjct: 138 PTDAGAAKASSPSRSRHSP--------YAWMRKTVQVTGKTRTKE--KYRVVYTDHQRLE 187
Query: 210 LEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267
LEKEFH NRY+T +R+ E+A L LSERQ+KIWFQNRR K +K K K +GG+
Sbjct: 188 LEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGS 245
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 95.5 bits (236), Expect = 4e-20
Identities = 85/268 (31%), Positives = 115/268 (42%), Gaps = 29/268 (10%)
Query: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
M+S+ C R P+ Y H+ S + GRYG G+ +
Sbjct: 6 MNSFLEYPLCNRGPSA--YSAHSAPTSFPPSSAQAVDSYASEGRYG---GGLSSPAFQQN 60
Query: 61 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSD-----SH 115
SG+ + S+AP S A + SP P + S G S
Sbjct: 61 SGYPAQQPPSTLGVPFPSSAP-----SGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSS 115
Query: 116 HGGK-NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSE-PSPAPPAQ 173
+G + LS+ GA + G A APA ++ S E P P+ P
Sbjct: 116 YGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQTASF-APAYADLLSEDKETPCPSEPNT 174
Query: 174 P--QIYPWMR-------KLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRR 224
P + + WM+ +S +G P G RT +T Q ELEKEFHFN+YL+R R
Sbjct: 175 PTARTFDWMKVKRNPPKTAKVSEPGLGSPSG--LRTNFTTRQLTELEKEFHFNKYLSRAR 232
Query: 225 RIEIAHALCLSERQIKIWFQNRRMKWKK 252
R+EIA L L+E Q+KIWFQNRRMK KK
Sbjct: 233 RVEIAATLELNETQVKIWFQNRRMKQKK 260
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 94.4 bits (233), Expect = 1e-19
Identities = 76/252 (30%), Positives = 110/252 (43%), Gaps = 50/252 (19%)
Query: 12 RYPNGPDYQLHNY-------GDHS-SVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGH 63
R +GP+ L+++ G+H V +R S S Y+ +D + SG+
Sbjct: 119 RAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPS---------YSALDKTPHCSGAND 169
Query: 64 FGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLS 123
F AP E R S + H P + +P SDS N +
Sbjct: 170 F--------------EAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPSPNEIK 215
Query: 124 NSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKL 183
+ GS S +E A A+ S +A + + A+ W+
Sbjct: 216 TEQSLAGPKGSPSESEKE---RAKAADSSPDTSDNEAKEEIK------AENTTGNWLT-- 264
Query: 184 HISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWF 243
G++ R YT++QTLELEKEF FN YLTR RR+EI+ + L++RQ+KIWF
Sbjct: 265 --------AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWF 316
Query: 244 QNRRMKWKKDNK 255
QNRRMK KK N+
Sbjct: 317 QNRRMKLKKMNR 328
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 93.6 bits (231), Expect = 2e-19
Identities = 70/198 (35%), Positives = 94/198 (47%), Gaps = 29/198 (14%)
Query: 63 HFGSGER-ARSYAASASAAPAEPRYSQPATSTH-SPQPDPLPCSAVAPSPGSDSHHGGKN 120
H G+ R R++ S A + P + PA H + +PD P PG + +
Sbjct: 85 HLGADTRYMRTWLEPLSGAVSFPSF--PAGGRHYALKPDAYPGRRADCGPGEGRSY--PD 140
Query: 121 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM 180
+ S G D + S E DA A S+ +++ P+ P I+
Sbjct: 141 YMYGSPGELRDRAPQTLPSPEA---------DALAGSKHKEEKADLDPSNPVANWIH--- 188
Query: 181 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK 240
++ R YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+K
Sbjct: 189 -----------ARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVK 237
Query: 241 IWFQNRRMKWKKDNKLKS 258
IWFQNRRMK KK NK K+
Sbjct: 238 IWFQNRRMKMKKMNKEKT 255
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,440,830
Number of Sequences: 37866
Number of extensions: 681830
Number of successful extensions: 8275
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 630
Number of HSP's that attempted gapping in prelim test: 5928
Number of HSP's gapped (non-prelim): 2612
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.