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Search of human proteins with 24497515
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497515 homeobox A3 isoform b [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497515 homeobox A3 isoform b [Homo sapiens] 604 e-173
gi|24497513 homeobox A3 isoform a [Homo sapiens] 604 e-173
gi|13562112 homeobox A3 isoform a [Homo sapiens] 604 e-173
gi|84570137 homeobox B3 [Homo sapiens] 320 9e-88
gi|19923391 homeobox D3 [Homo sapiens] 315 4e-86
gi|4504465 homeobox B2 [Homo sapiens] 112 3e-25
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 108 7e-24
gi|10140847 homeobox A2 [Homo sapiens] 105 3e-23
gi|23397672 homeobox D4 [Homo sapiens] 102 5e-22
gi|24497517 homeobox A5 [Homo sapiens] 101 7e-22
gi|4504469 homeobox B5 [Homo sapiens] 100 1e-21
gi|13273315 homeobox B4 [Homo sapiens] 100 1e-21
gi|148613882 homeobox A4 [Homo sapiens] 99 4e-21
gi|11321638 homeobox C5 [Homo sapiens] 96 3e-20
gi|33457326 GS homeobox 1 [Homo sapiens] 95 6e-20
gi|24497556 homeobox A7 [Homo sapiens] 94 1e-19
gi|13489077 homeobox A6 [Homo sapiens] 94 2e-19
gi|24497538 homeobox C4 [Homo sapiens] 94 2e-19
gi|24497540 homeobox C4 [Homo sapiens] 94 2e-19
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 94 2e-19
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 94 2e-19
gi|85068580 homeobox B7 [Homo sapiens] 91 1e-18
gi|24497526 homeobox B1 [Homo sapiens] 91 1e-18
gi|23503237 homeobox B6 [Homo sapiens] 90 2e-18
gi|13375632 homeobox D1 [Homo sapiens] 88 1e-17
gi|89257348 homeo box HB9 [Homo sapiens] 88 1e-17
gi|18959212 GS homeobox 2 [Homo sapiens] 87 1e-17
gi|23097236 homeobox A9 [Homo sapiens] 86 5e-17
gi|15029508 homeobox B9 [Homo sapiens] 85 8e-17
gi|194363768 homeobox D9 [Homo sapiens] 84 1e-16
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 604 bits (1558), Expect = e-173
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 60
MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR
Sbjct: 1 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 60
Query: 61 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 120
PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN
Sbjct: 61 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 120
Query: 121 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 180
SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG
Sbjct: 121 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 180
Query: 181 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 240
TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY
Sbjct: 181 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 240
Query: 241 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 285
GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL
Sbjct: 241 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 285
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 604 bits (1558), Expect = e-173
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 60
MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR
Sbjct: 159 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 218
Query: 61 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 120
PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN
Sbjct: 219 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 278
Query: 121 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 180
SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG
Sbjct: 279 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338
Query: 181 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 240
TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY
Sbjct: 339 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 398
Query: 241 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 285
GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL
Sbjct: 399 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 443
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 104 QSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQS---PPPFSKPPQGTYGLPPASYPA---S 157
QSPS + P A + +++ P +P S PP PPQ P PA
Sbjct: 53 QSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPP 112
Query: 158 LPSCAPPPPPQKRYTAAGAGAGGTP 182
P+ A PPPP A TP
Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTP 137
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 604 bits (1558), Expect = e-173
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 60
MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR
Sbjct: 159 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 218
Query: 61 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 120
PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN
Sbjct: 219 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 278
Query: 121 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 180
SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG
Sbjct: 279 SMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG 338
Query: 181 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 240
TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY
Sbjct: 339 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDY 398
Query: 241 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 285
GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL
Sbjct: 399 GGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 443
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 104 QSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQS---PPPFSKPPQGTYGLPPASYPA---S 157
QSPS + P A + +++ P +P S PP PPQ P PA
Sbjct: 53 QSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPP 112
Query: 158 LPSCAPPPPPQKRYTAAGAGAGGTP 182
P+ A PPPP A TP
Sbjct: 113 APTPAAPPPPSSASPPQNASNNPTP 137
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 320 bits (820), Expect = 9e-88
Identities = 178/315 (56%), Positives = 208/315 (66%), Gaps = 46/315 (14%)
Query: 1 MKESRQNTKQKTSSSSSGESCAG-----------------------DKSPPGQASSKRAR 37
MKESRQ +K K +S + E C G DKSPPG A+SKRAR
Sbjct: 133 MKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRAR 192
Query: 38 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGM 97
TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL+ERQIKIWFQNRRMKYKKDQK KG+
Sbjct: 193 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGL 252
Query: 98 LTSSGGQSPSRSPVPP--GAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYP 155
+SSGG SP+ SP P G++N++HS+ S YE SPP F K Q Y L P++Y
Sbjct: 253 ASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPS--YESPSPPAFGKAHQNAYAL-PSNYQ 309
Query: 156 ASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGN-GSYGTPHIQGSPVFV-GGSY 213
L C P ++Y A P+Y+PH LQ N G+YGTP +QGSPV+V GG Y
Sbjct: 310 PPLKGCGAP----QKYPPTPA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGY 358
Query: 214 VEPM-SNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH-- 270
+P+ +GP+L+GL HL H SG +DY GA P+ HH GP EPHPTYTDL+ HH
Sbjct: 359 ADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHAP 416
Query: 271 PSQGRIQEAPKLTHL 285
P QGRIQEAPKLTHL
Sbjct: 417 PPQGRIQEAPKLTHL 431
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 315 bits (806), Expect = 4e-86
Identities = 170/287 (59%), Positives = 201/287 (70%), Gaps = 20/287 (6%)
Query: 1 MKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCR 60
MKESRQN+KQK S +++GESC DKSPPG AS KR RTAYTSAQLVELEKEFHFNRYLCR
Sbjct: 164 MKESRQNSKQKNSCATAGESCE-DKSPPGPAS-KRVRTAYTSAQLVELEKEFHFNRYLCR 221
Query: 61 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN 120
PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK KG+L S QSP RSP GA G++
Sbjct: 222 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVA 281
Query: 121 SMHSL--VNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGA 178
L V + Y+ SPP F+K YGL A+Y A L SC P QKRY A
Sbjct: 282 YSGQLPPVPGLAYDAPSPPAFAKSQPNMYGL--AAYTAPLSSCL---PQQKRYAA----- 331
Query: 179 GGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAM 238
P+++PH G G + + ++QGSPV+VGG++VE M+ + +F L HL H +S ++
Sbjct: 332 ---PEFEPHPMASNG-GGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASV 387
Query: 239 DYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL 285
DY A + HHH GP +PHPTYTDL+ HH SQGR+ EAPKLTHL
Sbjct: 388 DYSCAAQIPGNHHH--GPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL 432
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 112 bits (281), Expect = 3e-25
Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 31/195 (15%)
Query: 1 MKESRQNTKQKTSSSS-----SGESCAGDKSPP--------GQASSKRARTAYTSAQLVE 47
MKE + K S++S S +G SP G ++R RTAYT+ QL+E
Sbjct: 98 MKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLE 157
Query: 48 LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPS 107
LEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQNRRMK+K+ + + + P
Sbjct: 158 LEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHR--------EPPD 209
Query: 108 RSPVPPGAGGYLNSMHSLVNSVPYEPQSP--PPFSKPPQGTYGLPPASYPASLPSCAPPP 165
P PGA + + + SP P S+ PP P +L A P
Sbjct: 210 GEPACPGA------LEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGAL--SADPR 261
Query: 166 PPQKRYTAAGAGAGG 180
P R AGA + G
Sbjct: 262 PLAVRLEGAGASSPG 276
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 108 bits (269), Expect = 7e-24
Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 17/145 (11%)
Query: 33 SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 92
+KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNLTER IKIWFQNRRMK+KK++
Sbjct: 146 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 205
Query: 93 ---KGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYG- 148
+G G GG + +G L ++ P PP + PP
Sbjct: 206 DKKRGGGTAVGGGGVAEPEQDCAVTSGEELLAL---------PPPPPPGGAVPPAAPVAA 256
Query: 149 ----LPPASYPASLPSCAPPPPPQK 169
LPP + PS P PQ+
Sbjct: 257 REGRLPPGLSASPQPSSVAPRRPQE 281
Score = 28.1 bits (61), Expect = 9.2
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 150 PPASYPASLPSCA------PPPPPQKRYTAAGA-GAGGTPDYDPH 187
P + AS P+C PPPPP A GA G PD P+
Sbjct: 24 PAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPY 68
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 105 bits (263), Expect = 3e-23
Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 13 SSSSSGESCAGDK-----SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 67
+++++G +C K + S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A
Sbjct: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
Query: 68 NLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSG 102
LL+LTERQ+K+WFQNRRMK+K+ + K S G
Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEG 212
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 102 bits (253), Expect = 5e-22
Identities = 53/83 (63%), Positives = 62/83 (74%), Gaps = 3/83 (3%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHK 214
Query: 94 ---GKGMLTSSGGQSPSRSPVPP 113
KG +SS S S V P
Sbjct: 215 LPNTKGRSSSSSSSSSCSSSVAP 237
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 101 bits (252), Expect = 7e-22
Identities = 50/75 (66%), Positives = 58/75 (77%)
Query: 29 GQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY 88
G KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+
Sbjct: 191 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 250
Query: 89 KKDQKGKGMLTSSGG 103
KKD K K M ++ G
Sbjct: 251 KKDNKLKSMSMAAAG 265
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 100 bits (250), Expect = 1e-21
Identities = 49/72 (68%), Positives = 58/72 (80%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
Query: 94 GKGMLTSSGGQS 105
K M ++ G +
Sbjct: 255 LKSMSLATAGSA 266
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 100 bits (249), Expect = 1e-21
Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR+RTAYT Q++ELEKEFH+NRYL R RRVE+A+ L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222
Query: 94 GKGMLTSSGGQSPSRSPVPPG 114
SGG + S PPG
Sbjct: 223 LPNTKIRSGGAAGSAGG-PPG 242
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 130 PYEPQSPPPFSKPPQGTYGLPPASYPAS--LP---------SCAPPPPP 167
P P PPP PP G PA PA LP S +PPPPP
Sbjct: 73 PPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPP 121
Score = 28.1 bits (61), Expect = 9.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 133 PQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTP 182
P PPP PP GL P + PA P+ A P P +R A + P
Sbjct: 73 PPPPPPPPPPPPPPPGLSPRA-PAPPPAGALLPEPGQRCEAVSSSPPPPP 121
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 99.0 bits (245), Expect = 4e-21
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L L+ERQ+KIWFQNRRMK+KKD K
Sbjct: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK 275
Query: 94 GKGMLTSSGGQSPSRSPVPPG 114
S S S S PPG
Sbjct: 276 LPNTKMRS-SNSASASAGPPG 295
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 96.3 bits (238), Expect = 3e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Query: 30 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 89
+ KR+RT+YT Q +ELEKEFHFNRYL R RR+E+AN L L ERQIKIWFQNRRMK+K
Sbjct: 152 ETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWK 211
Query: 90 KDQKGK 95
KD K K
Sbjct: 212 KDSKMK 217
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 95.1 bits (235), Expect = 6e-20
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 24 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 83
D S SSKR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQN
Sbjct: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
Query: 84 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 114
RR+K+KK+ KG GG + P G
Sbjct: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 94.4 bits (233), Expect = 1e-19
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 9/82 (10%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR R YT Q +ELEKEFHFNRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
Query: 94 GKGMLTSSGGQSPSRSPVPPGA 115
+G P+ + P GA
Sbjct: 191 DEG---------PTAAAAPEGA 203
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 93.6 bits (231), Expect = 2e-19
Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 20 SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 79
SCAG + +R R YT Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKI
Sbjct: 145 SCAGAVYG---SHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKI 201
Query: 80 WFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 109
WFQNRRMK+KK+ K SG S +++
Sbjct: 202 WFQNRRMKWKKENKLINSTQPSGEDSEAKA 231
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 93.6 bits (231), Expect = 2e-19
Identities = 43/60 (71%), Positives = 53/60 (88%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR+RTAYT Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 93.6 bits (231), Expect = 2e-19
Identities = 43/60 (71%), Positives = 53/60 (88%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR+RTAYT Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 93.6 bits (231), Expect = 2e-19
Identities = 46/79 (58%), Positives = 56/79 (70%)
Query: 31 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 90
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKIWFQNRRMK+KK
Sbjct: 57 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
Query: 91 DQKGKGMLTSSGGQSPSRS 109
+ L+ GG + + S
Sbjct: 117 ESNLTSTLSGGGGGATADS 135
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 93.6 bits (231), Expect = 2e-19
Identities = 46/79 (58%), Positives = 56/79 (70%)
Query: 31 ASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 90
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKIWFQNRRMK+KK
Sbjct: 139 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
Query: 91 DQKGKGMLTSSGGQSPSRS 109
+ L+ GG + + S
Sbjct: 199 ESNLTSTLSGGGGGATADS 217
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 90.9 bits (224), Expect = 1e-18
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
KR R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
Query: 94 GKG 96
G
Sbjct: 198 TAG 200
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/89 (52%), Positives = 56/89 (62%), Gaps = 10/89 (11%)
Query: 26 SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 85
S PG S RT +T+ QL ELEKEFHFN+YL R RRVE+A L L E Q+KIWFQNRR
Sbjct: 196 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 255
Query: 86 MKYKKDQKGKGMLTSSGGQSPSRSPVPPG 114
MK KK ++ +G + P PPG
Sbjct: 256 MKQKKREREEGRV----------PPAPPG 274
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 90.1 bits (222), Expect = 2e-18
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
S +R R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+
Sbjct: 145 SGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204
Query: 92 QK 93
K
Sbjct: 205 SK 206
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 9 KQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN 68
K K ++S G+ + P A RT +++ QL ELEKEFHFN+YL R RR+E+AN
Sbjct: 209 KVKRNASKKGKLAEYGAASPSSA----IRTNFSTKQLTELEKEFHFNKYLTRARRIEIAN 264
Query: 69 LLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPV 111
L+L + Q+KIWFQNRRMK KK ++ +G+L ++ +P + P+
Sbjct: 265 CLHLNDTQVKIWFQNRRMKQKKRER-EGLLATAIPVAPLQLPL 306
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 87.8 bits (216), Expect = 1e-17
Identities = 57/153 (37%), Positives = 74/153 (48%), Gaps = 19/153 (12%)
Query: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
+R RTA+TS QL+ELE +F N+YL RP+R E+A L LTE Q+KIWFQNRRMK+K+ +K
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301
Query: 94 GK--------------GMLTSSGGQSPSR----SPVPPGAGGYLNSMHSLVNSVPYEPQS 135
K G G + P P PG G + L +S P E +
Sbjct: 302 AKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRDLRDSDPEEDED 361
Query: 136 PPPFSK-PPQGTYGLPPASYPASLPSCAPPPPP 167
P + AS S +PPP P
Sbjct: 362 EDDEDHFPYSNGASVHAASSDCSSEDDSPPPRP 394
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
+ KR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQNRR+K+KK+
Sbjct: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
Query: 92 QKG 94
KG
Sbjct: 261 GKG 263
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 85.5 bits (210), Expect = 5e-17
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 5 RQNTKQKTSSSSSGESCAGDKSP--PGQA--------SSKRARTAYTSAQLVELEKEFHF 54
+Q ++ S +++ GDK P P S+++ R YT Q +ELEKEF F
Sbjct: 168 KQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLF 227
Query: 55 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 95
N YL R RR E+A LLNLTERQ+KIWFQNRRMK KK K +
Sbjct: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 84.7 bits (208), Expect = 8e-17
Identities = 42/65 (64%), Positives = 49/65 (75%)
Query: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
SS++ R YT Q +ELEKEF FN YL R RR E+A LLNL+ERQ+KIWFQNRRMK KK
Sbjct: 184 SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
Query: 92 QKGKG 96
K +G
Sbjct: 244 NKEQG 248
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 84.3 bits (207), Expect = 1e-16
Identities = 41/64 (64%), Positives = 48/64 (75%)
Query: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
S+++ R YT Q +ELEKEF FN YL R RR E+A +LNLTERQ+KIWFQNRRMK KK
Sbjct: 284 STRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
Query: 92 QKGK 95
K K
Sbjct: 344 SKEK 347
Score = 31.6 bits (70), Expect = 0.83
Identities = 35/127 (27%), Positives = 42/127 (33%), Gaps = 18/127 (14%)
Query: 139 FSKPPQGTYGLP------PASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQ 192
F P G G P PA+ A SC+ P R A P P A +
Sbjct: 38 FGPPGPGAQGRPAGVADGPAATAAEFASCSFAP----RSAVFSASWSAVPSQPPAAAAMS 93
Query: 193 GNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHH 252
G P++ P+ S EP + L P A G GG GP G
Sbjct: 94 G---LYHPYVPPPPLAASAS--EPGRYVRSWMEPLPGFPGGAGGGGGGGGGGP---GRGP 145
Query: 253 GPGPGEP 259
PGP P
Sbjct: 146 SPGPSGP 152
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,664,156
Number of Sequences: 37866
Number of extensions: 1164051
Number of successful extensions: 11091
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 865
Number of HSP's that attempted gapping in prelim test: 6472
Number of HSP's gapped (non-prelim): 3985
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.