NUP88 23897

Name: NUP88	Sequence: fasta or formatted (741aa)		NCBI GI: 24497453
Description: nucleoporin 88kDa		Referenced in: Nucleus and Nucleolus
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 41 3 C cysteine 2.7 20 1 D aspartate 4.7 35 2 E glutamate 9.4 70 3 F phenylalanine 3.1 23 2 G glycine 5.0 37 3 H histidine 3.1 23 2 I isoleucine 5.3 39 2 K lysine 6.2 46 3 L leucine 12.8 95 2 M methionine 1.6 12 1 N asparagine 2.7 20 1 P proline 7.2 53 3 Q glutamine 4.0 30 3 R arginine 4.6 34 2 S serine 7.6 56 3 T threonine 4.5 33 2 V valine 6.1 45 2 W tryptophan 1.2 9 1 Y tyrosine 2.7 20 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 88kDa CCDC11 0.016 coiled-coil domain containing 11 LEKR1 0.016 leucine, glutamate and lysine rich 1 GOLGA4 0.014 golgi autoantigen, golgin subfamily a, 4 DSP 0.014 desmoplakin isoform I CENPE 0.014 centromere protein E KIF20B 0.013 M-phase phosphoprotein 1 LOC100133220 0.013 PREDICTED: hypothetical protein TCHH 0.013 trichohyalin CENPF 0.012 centromere protein F KIF3C 0.012 kinesin family member 3C PMFBP1 0.012 polyamine modulated factor 1 binding protein 1 isof... PMFBP1 0.012 polyamine modulated factor 1 binding protein 1 isof... C14orf145 0.011 hypothetical protein LOC145508 CYTSA 0.011 cytospin A CYTSA 0.011 cytospin A HOMER2 0.011 homer 2 isoform 2 HOMER2 0.011 homer 2 isoform 1 MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... LOC283685 0.011 PREDICTED: golgi autoantigen, golgin subfamily a-li... RPGRIP1 0.011 retinitis pigmentosa GTPase regulator interacting p... UACA 0.011 uveal autoantigen with coiled-coil domains and ankyr... UACA 0.011 uveal autoantigen with coiled-coil domains and ankyr... LUZP1 0.011 leucine zipper protein 1 LUZP1 0.011 leucine zipper protein 1 SYCP1 0.011 synaptonemal complex protein 1 CDC42BPB 0.011 CDC42-binding protein kinase beta Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.