Guide to the Human Genome
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Name: CYTSA Sequence: fasta or formatted (1117aa) NCBI GI: 224451082
Description:

cytospin A

Referenced in:

Testes and Sperm

Other entries for this name:
alt mRNA [1117aa] cytospin A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         93           4
 C cysteine            0.6          7           1
 D aspartate           5.6         62           2
 E glutamate          10.7        119           3
 F phenylalanine       1.3         14           1
 G glycine             3.9         44           3
 H histidine           2.1         24           2
 I isoleucine          4.1         46           2
 K lysine              7.2         80           2
 L leucine             9.7        108           2
 M methionine          2.8         31           1
 N asparagine          4.3         48           1
 P proline             3.6         40           2
 Q glutamine           5.6         62           2
 R arginine            6.4         72           2
 S serine             11.7        131           3
 T threonine           6.2         69           2
 V valine              3.9         44           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytospin A 
CYTSA                 1.000   cytospin A 
CYTSB                 0.312   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.306   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.192   spectrin domain with coiled-coils 1 NSP5b3a 
CYTSB                 0.186   spectrin domain with coiled-coils 1 NSP5a3a 
SMTN                  0.040   smoothelin isoform b 
SMTNL1                0.039   smoothelin-like 1 
SMTN                  0.037   smoothelin isoform a 
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
EHBP1                 0.035   EH domain binding protein 1 isoform 3 
EHBP1                 0.035   EH domain binding protein 1 isoform 3 
EHBP1                 0.035   EH domain binding protein 1 isoform 2 
SMTN                  0.035   smoothelin isoform c 
EHBP1                 0.035   EH domain binding protein 1 isoform 1 
AKAP9                 0.034   A-kinase anchor protein 9 isoform 3 
SMTNL2                0.034   smoothelin-like 2 isoform 2 
SMTNL2                0.034   smoothelin-like 2 isoform 1 
DST                   0.033   dystonin isoform 1e precursor 
SPTB                  0.033   spectrin beta isoform a 
SPTB                  0.033   spectrin beta isoform b 
MYH10                 0.032   myosin, heavy polypeptide 10, non-muscle 
MYH6                  0.032   myosin heavy chain 6 
CGNL1                 0.032   cingulin-like 1 
FAM184A               0.032   hypothetical protein LOC79632 isoform 1 
MYH8                  0.032   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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