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Search of human proteins with 24429592
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24429592 chondroitin sulfate
N-acetylgalactosaminyltransferase 2 [Homo sapiens]
(542 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 1104 0.0
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera... 668 0.0
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera... 668 0.0
gi|239757870 PREDICTED: novel protein similar to chondroitin sul... 195 8e-50
gi|239752388 PREDICTED: novel protein similar to chondroitin sul... 195 8e-50
gi|239746905 PREDICTED: novel protein similar to chondroitin sul... 195 8e-50
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 194 2e-49
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 182 7e-46
gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 84 4e-16
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 76 7e-14
gi|27545323 chondroitin polymerizing factor [Homo sapiens] 69 1e-11
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens] 54 5e-07
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 39 0.009
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 37 0.060
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens] 36 0.079
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 35 0.13
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 35 0.17
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 35 0.17
gi|153945715 myosin VC [Homo sapiens] 35 0.17
gi|157785668 coiled-coil domain containing 39 [Homo sapiens] 35 0.17
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 35 0.23
gi|51317366 myosin XVIIIB [Homo sapiens] 34 0.30
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 34 0.30
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 34 0.30
gi|116517292 cut-like 2 [Homo sapiens] 34 0.39
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 34 0.39
gi|31982906 cingulin-like 1 [Homo sapiens] 34 0.39
gi|28195388 RAB11 family interacting protein 4 (class II) [Homo ... 34 0.39
gi|23943928 hypothetical protein LOC140680 [Homo sapiens] 34 0.39
gi|21359846 prospero homeobox 1 [Homo sapiens] 33 0.51
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 1104 bits (2856), Expect = 0.0
Identities = 542/542 (100%), Positives = 542/542 (100%)
Query: 1 MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQAL 60
MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQAL
Sbjct: 1 MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQAL 60
Query: 61 LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDL 120
LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDL
Sbjct: 61 LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDL 120
Query: 121 LEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDEL 180
LEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDEL
Sbjct: 121 LEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDEL 180
Query: 181 VEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKA 240
VEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKA
Sbjct: 181 VEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKA 240
Query: 241 DLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQD 300
DLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQD
Sbjct: 241 DLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQD 300
Query: 301 KKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGE 360
KKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGE
Sbjct: 301 KKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGE 360
Query: 361 VLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVH 420
VLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVH
Sbjct: 361 VLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVH 420
Query: 421 KKDSGFWRDFGFGMTCQYRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPG 480
KKDSGFWRDFGFGMTCQYRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPG
Sbjct: 421 KKDSGFWRDFGFGMTCQYRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPG 480
Query: 481 LFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIETHLHKQAYRTNSEA 540
LFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIETHLHKQAYRTNSEA
Sbjct: 481 LFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIETHLHKQAYRTNSEA 540
Query: 541 VG 542
VG
Sbjct: 541 VG 542
>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 668 bits (1723), Expect = 0.0
Identities = 326/540 (60%), Positives = 410/540 (75%), Gaps = 13/540 (2%)
Query: 1 MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQAL 60
M RRGL+ +LL LLC + +Y+L C P+ D GKE YQA+
Sbjct: 3 MVRRGLLAWISRVVVLL--VLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV 60
Query: 61 LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGY-QSNKEQAPSD 119
LQE EE ++ +SLKRQIAQLK+ELQE SE++R+ Q + + A G+G +S E+ +D
Sbjct: 61 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAA-GLGLDRSPPEKTQAD 119
Query: 120 LLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDE 179
LL FLHSQ+DKAEV+ G KL +EY +PF+SFTL KV+QLE GLTRHPEEKPVRKDKRDE
Sbjct: 120 LLAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDE 179
Query: 180 LVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKK 239
LVE IE+ LE +N+P E+ + +DF+EG YRTERDKGT YEL FK
Sbjct: 180 LVEAIESALETLNSPAENSPNHRP---------YTASDFIEGIYRTERDKGTLYELTFKG 230
Query: 240 ADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQ 299
E++ + LFRPFGP+MKVK+E +++ ++IN+IVPLA+R + F QFMQNFR++CI Q
Sbjct: 231 DHKHEFKRLILFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQ 290
Query: 300 DKKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKG 359
D ++HLTVVYFGKE +++VK ILE+ + +NF N+T + LN EF+RG+GL+VGAR W
Sbjct: 291 DGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGS 350
Query: 360 EVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLV 419
VL+FFCDVDIYF++EFLN+CRLN +PGKKVFYPV+FS YNP I+Y + + PP+EQQLV
Sbjct: 351 NVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLV 410
Query: 420 HKKDSGFWRDFGFGMTCQYRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVP 479
KK++GFWRDFGFGMTCQYRSDF+ IGGFD+++KGWGGEDVHLYRKYLH +LIV+RTPV
Sbjct: 411 IKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVR 470
Query: 480 GLFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIETHLHKQAYRTNSE 539
GLFHLWHEKRC DELTPEQY+MC+QSKAMNEASH LGMLVFR EIE HL KQ +T+S+
Sbjct: 471 GLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEIEAHLRKQKQKTSSK 530
>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 668 bits (1723), Expect = 0.0
Identities = 326/540 (60%), Positives = 410/540 (75%), Gaps = 13/540 (2%)
Query: 1 MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQAL 60
M RRGL+ +LL LLC + +Y+L C P+ D GKE YQA+
Sbjct: 3 MVRRGLLAWISRVVVLL--VLLCCAISVLYMLACTPKGDEEQLALPRANSPTGKEGYQAV 60
Query: 61 LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGY-QSNKEQAPSD 119
LQE EE ++ +SLKRQIAQLK+ELQE SE++R+ Q + + A G+G +S E+ +D
Sbjct: 61 LQEWEEQHRNYVSSLKRQIAQLKEELQERSEQLRNGQYQASDAA-GLGLDRSPPEKTQAD 119
Query: 120 LLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDE 179
LL FLHSQ+DKAEV+ G KL +EY +PF+SFTL KV+QLE GLTRHPEEKPVRKDKRDE
Sbjct: 120 LLAFLHSQVDKAEVNAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDE 179
Query: 180 LVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKK 239
LVE IE+ LE +N+P E+ + +DF+EG YRTERDKGT YEL FK
Sbjct: 180 LVEAIESALETLNSPAENSPNHRP---------YTASDFIEGIYRTERDKGTLYELTFKG 230
Query: 240 ADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQ 299
E++ + LFRPFGP+MKVK+E +++ ++IN+IVPLA+R + F QFMQNFR++CI Q
Sbjct: 231 DHKHEFKRLILFRPFGPIMKVKNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQ 290
Query: 300 DKKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKG 359
D ++HLTVVYFGKE +++VK ILE+ + +NF N+T + LN EF+RG+GL+VGAR W
Sbjct: 291 DGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGS 350
Query: 360 EVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLV 419
VL+FFCDVDIYF++EFLN+CRLN +PGKKVFYPV+FS YNP I+Y + + PP+EQQLV
Sbjct: 351 NVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLV 410
Query: 420 HKKDSGFWRDFGFGMTCQYRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVP 479
KK++GFWRDFGFGMTCQYRSDF+ IGGFD+++KGWGGEDVHLYRKYLH +LIV+RTPV
Sbjct: 411 IKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVR 470
Query: 480 GLFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIETHLHKQAYRTNSE 539
GLFHLWHEKRC DELTPEQY+MC+QSKAMNEASH LGMLVFR EIE HL KQ +T+S+
Sbjct: 471 GLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEIEAHLRKQKQKTSSK 530
>gi|239757870 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 195 bits (496), Expect = 8e-50
Identities = 91/96 (94%), Positives = 92/96 (95%)
Query: 447 GFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSK 506
GFDMEVKGWGGEDVHLYRKYL GDLIVIR PVPGLFHLWHEK CADELTPEQYRMCIQSK
Sbjct: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
Query: 507 AMNEASHSHLGMLVFREEIETHLHKQAYRTNSEAVG 542
AM+EAS SHLGMLVFREEIETHLHKQAYRTNSEAVG
Sbjct: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNSEAVG 142
>gi|239752388 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 195 bits (496), Expect = 8e-50
Identities = 91/96 (94%), Positives = 92/96 (95%)
Query: 447 GFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSK 506
GFDMEVKGWGGEDVHLYRKYL GDLIVIR PVPGLFHLWHEK CADELTPEQYRMCIQSK
Sbjct: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
Query: 507 AMNEASHSHLGMLVFREEIETHLHKQAYRTNSEAVG 542
AM+EAS SHLGMLVFREEIETHLHKQAYRTNSEAVG
Sbjct: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNSEAVG 142
>gi|239746905 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 195 bits (496), Expect = 8e-50
Identities = 91/96 (94%), Positives = 92/96 (95%)
Query: 447 GFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSK 506
GFDMEVKGWGGEDVHLYRKYL GDLIVIR PVPGLFHLWHEK CADELTPEQYRMCIQSK
Sbjct: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
Query: 507 AMNEASHSHLGMLVFREEIETHLHKQAYRTNSEAVG 542
AM+EAS SHLGMLVFREEIETHLHKQAYRTNSEAVG
Sbjct: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNSEAVG 142
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 194 bits (492), Expect = 2e-49
Identities = 98/270 (36%), Positives = 153/270 (56%), Gaps = 11/270 (4%)
Query: 272 INIIVPLAERTEAFVQFMQNFRDVCIHQDKKIHLTVVYFGKEGLSKVKSILESVTSESNF 331
++I+VPL R + F++FM+NF ++C+ + + L ++ F ++ +E + N
Sbjct: 621 VHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNK 680
Query: 332 H---NYTLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPGK 388
+ TL+ + EF+RG GL + + +D + L+ FCDVD+ F +FL CR N G+
Sbjct: 681 YPKAEMTLIPMKGEFSRGLGLEMASAQFDN-DTLLLFCDVDLIFREDFLQRCRDNTIQGQ 739
Query: 389 KVFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLTIGGF 448
+V+YP++FS Y+P + PP + + K +GFWRD+G+G+TC Y+SD L GGF
Sbjct: 740 QVYYPIIFSQYDPKVTNGGN---PPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGAGGF 796
Query: 449 DMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSKAM 508
D ++GWG EDV LY K + L R+ G+ H++H C L P+QY+MC+ SKA
Sbjct: 797 DTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKAS 856
Query: 509 NEASHSHLGMLVFREEIETHLHKQAYRTNS 538
AS L L +E HL + RT S
Sbjct: 857 TFASTMQLAEL----WLEKHLGVRYNRTLS 882
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 182 bits (462), Expect = 7e-46
Identities = 91/259 (35%), Positives = 149/259 (57%), Gaps = 7/259 (2%)
Query: 261 KSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQDKKIHLTVVYFGKEG---LSK 317
KSE + INI++PL+ R + FV+FM NF C+ ++ + L V+ F + +K
Sbjct: 523 KSEHKEPKDKKINILIPLSGRFDMFVRFMGNFEKTCLIPNQNVKLVVLLFNSDSNPDKAK 582
Query: 318 VKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFL 377
++ + + ++ ++ EF+R L VG+ ++ E L+FFCDVD+ F+ EFL
Sbjct: 583 QVELMRDYRIKYPKADMQILPVSGEFSRALALEVGSSQFNN-ESLLFFCDVDLVFTTEFL 641
Query: 378 NSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQ 437
CR N G+++++P++FS Y+P IVY+ + P + + +GFWR++GFG+TC
Sbjct: 642 QRCRANTVLGQQIYFPIIFSQYDPKIVYSGKV---PSDNHFAFTQKTGFWRNYGFGITCI 698
Query: 438 YRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPE 497
Y+ D + +GGFD+ ++GWG EDV L+ K + L R+ G+ H+ H C L P+
Sbjct: 699 YKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFRSQEVGVVHVHHPVFCDPNLDPK 758
Query: 498 QYRMCIQSKAMNEASHSHL 516
QY+MC+ SKA S L
Sbjct: 759 QYKMCLGSKASTYGSTQQL 777
>gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transferase
3 [Homo sapiens]
Length = 998
Score = 83.6 bits (205), Expect = 4e-16
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 269 RSIINIIVPLAERTEAFVQFMQNFRDVC-IHQDKKIHLTVVYFGKEGLSKVKSILESVTS 327
R++++ +VP+ + QF+++ ++ + D ++ + + E + +E
Sbjct: 785 RAVVHFVVPVKNQARWVQQFIKDMENLFQVTGDPHFNIVITDYSSEDMD-----VEMALK 839
Query: 328 ESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPG 387
S +Y V L+ F R GL G ++F CD+ I+F A +++ R + G
Sbjct: 840 RSKLRSYQYVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEG 899
Query: 388 KKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLTIGG 447
K F P+V L+ A + G+W GFG+ Y+SD IGG
Sbjct: 900 KMAFAPMVMRLHCGA----------------TPQWPEGYWEVNGFGLLGIYKSDLDRIGG 943
Query: 448 FDMEV--KGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKR 489
+ + WGGED L + L L V R + FH +H KR
Sbjct: 944 MNTKEFRDRWGGEDWELLDRILQAGLDVERLSLRNFFHHFHSKR 987
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
[Homo sapiens]
Length = 1039
Score = 76.3 bits (186), Expect = 7e-14
Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 28/224 (12%)
Query: 271 IINIIVPLAERTEAFVQFMQNFRDVCIHQ---DKKIHLTVVYFGKEGLSKVKSILESVTS 327
+++ IVP+ + QF+ + +H D + + +V F E + +E
Sbjct: 823 MVHFIVPVKNQARWVAQFLADM--AALHARTGDSRFSVVLVDFESEDMD-----VERALR 875
Query: 328 ESNFHNYTLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPG 387
+ Y + F R GL G A + ++F CD+ I+F L+ R + G
Sbjct: 876 AARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEG 935
Query: 388 KKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLTIGG 447
+ F PVV L + + G+W GFG+ Y+SDF +GG
Sbjct: 936 RLAFAPVVMRLSCGS----------------SPRDPHGYWEVNGFGLFGIYKSDFDRVGG 979
Query: 448 FDMEV--KGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKR 489
+ E WGGED L + L L V R + +H +H KR
Sbjct: 980 MNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKR 1023
>gi|27545323 chondroitin polymerizing factor [Homo sapiens]
Length = 775
Score = 68.9 bits (167), Expect = 1e-11
Identities = 89/409 (21%), Positives = 158/409 (38%), Gaps = 50/409 (12%)
Query: 141 SEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQ 200
S + V+ ++ FT F G R P +R R ++ +V+ LE +N
Sbjct: 387 SRFEVLRWDYFTEQHAFSCADGSPRCP----LRGADRADVADVLGTALEELNRRYHP--- 439
Query: 201 EDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKADLTEY-------RHVTLFRP 253
L + V GY R + +G +Y L + LT R V L RP
Sbjct: 440 ---------ALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRP 490
Query: 254 FGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQ-FMQNFRDVCIHQDKK---IHLTVVY 309
+ + + S + +++PLA F++ F + + L ++Y
Sbjct: 491 LSRVEILPVPYVT-EASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLY 549
Query: 310 FGKEG--------LSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLNVGARAWDKG-- 359
++ + VK+ + + E F + L+ + L + K
Sbjct: 550 EPRQAQRVAHADVFAPVKAHVAEL--ERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPL 607
Query: 360 EVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLV 419
+ L D + +FLN CR++A G + F+P+ F ++PA+ PP +
Sbjct: 608 DTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPEL----- 662
Query: 420 HKKDSGFWRDFGFGMTCQYRSDFLTIGG---FDMEVKGWGGEDVHLYRKYLH-GDLIVIR 475
+D+G + C Y SD++ G E + E + +Y +LH L V+R
Sbjct: 663 -GRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLR 721
Query: 476 TPVPGLFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREE 524
P L + + C+ L+ + Y C+QS S + L ML+F +E
Sbjct: 722 AVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQE 770
>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
Length = 772
Score = 53.5 bits (127), Expect = 5e-07
Identities = 92/421 (21%), Positives = 154/421 (36%), Gaps = 58/421 (13%)
Query: 141 SEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQ 200
S + V+ ++ FT F G + P + R D D L E LE +N +
Sbjct: 368 SRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDAL----ETALEQLNRRYQP--- 420
Query: 201 EDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKADLTEYRH-------VTLFRP 253
+L F + + GY R + +G +Y L +T+ H V+L RP
Sbjct: 421 ---------RLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRP 471
Query: 254 FGPLMKVKSEMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQDKKIHLTV--VYFG 311
+ + + + ++ L A F++ F + + LT+ VY
Sbjct: 472 LSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGP 531
Query: 312 KEGLSKVKSILESVTS-----ESNFHNYTLVSLN---EEFNRGRGLNVGARAWDKGEVLM 363
+EG V + E + L L E ++ R ++V ++ + L
Sbjct: 532 REGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPV-DTLF 590
Query: 364 FFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVP------------ 411
F V E LN CR+NA G + F+PV F +NPA+ + Q P
Sbjct: 591 FLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPAL--SPQRSPPGPPGAGPDPPS 648
Query: 412 PPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLT--------IGGFDMEVKGWGGEDVHLY 463
PP G + C Y +D+L + G + E G E + ++
Sbjct: 649 PPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVF 708
Query: 464 RKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSKAMNEASHSHLGMLVFRE 523
++ L + R PGL + + C+ L+ E Y C S + L M +F +
Sbjct: 709 LRF--SGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQ 766
Query: 524 E 524
E
Sbjct: 767 E 767
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 39.3 bits (90), Expect = 0.009
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 59 ALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQER--------RNVGANGIGYQ 110
A LQ+++EH +QL+ L+E EK SL+++ + + A+ + +
Sbjct: 695 AKLQDKQEH-----------CSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVK 743
Query: 111 SNKEQAPSDLLEF--LHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQ----LEMGLT 164
++KEQA DL + L++ ++ + +L E ++ L K + ++ LT
Sbjct: 744 ASKEQALQDLQQQRQLNTDLELRATELSKQLEMEKEIVSSTRLDLQKKSEALESIKQKLT 803
Query: 165 RHPEEKPVRKDKRDELVEVIEAGLEVINN 193
+ EEK + K + L + + E +NN
Sbjct: 804 KQEEEKQILKQDFETLSQETKIQHEELNN 832
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 36.6 bits (83), Expect = 0.060
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 25/167 (14%)
Query: 58 QALLQEQEEHY------QTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQS 111
+A+ QE++E Y + ++Q+ + +QE++EM EKMR + + + ++
Sbjct: 1637 EAVRQEKQELYGKLRSTEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEEN 1696
Query: 112 NKEQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQL----------EM 161
++ +A + + +S A + E + E TL K FQ E+
Sbjct: 1697 DRLRAEVHPAGDTAKECMETLLSSNASMKEELERVKMEYETLSKKFQSLMSEKDSLSEEV 1756
Query: 162 GLTRHPEEKPVRK-------DKRDELVEVIEAGLEVINNPDEDDEQE 201
+H E V K +K D V E G + I P E +EQ+
Sbjct: 1757 QDLKHQIEGNVSKQANLEATEKHDNQTNVTEEGTQSI--PGETEEQD 1801
>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
Length = 439
Score = 36.2 bits (82), Expect = 0.079
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 45 PGVVGENYGKEYYQALLQE-----QEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQER 99
P VVGE+ + A E +EE + ++R+ ++Q QE + + E
Sbjct: 110 PEVVGESDSEVEGDAWRMEREDSSEEEEEEIDDEEIERRRGMMRQRAQERKNEEMEVMEV 169
Query: 100 RNVGANGIGYQSNKEQAPSDLLEFLHSQIDKAEVSIGAKL--PSEYGVIPFESFTLMKVF 157
+ G +G + ++ S+ E+ S+ D+ E + + + +K
Sbjct: 170 EDEGRSG-----EESESESEYEEYTDSE-DEMEPRLKPVFIRKKDRVTVQEREAEALKQK 223
Query: 158 QLEMGLTRHPEE------KPVRKDKRDELVEVIE--AGLEVINNPDEDDEQEDEEGPLGE 209
+LE R EE K V ++ + EL E A L+ +N DE+DE+E E + E
Sbjct: 224 ELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRE 283
Query: 210 KLIFNENDFVEGYYRTERDKGTQYELFFKKADLTEYRHVT 249
R +RD+ + L +KA++ R++T
Sbjct: 284 ------------LKRIKRDREDREALEKEKAEIERMRNLT 311
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 35.4 bits (80), Expect = 0.13
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 53 GKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMS----EKMRSLQERRNVGANGIG 108
G E LQ+Q E Q +T K Q+ +LK+E++E + +K++ LQ + A +
Sbjct: 834 GNEGQMRELQDQLEAEQYFSTLYKTQVKELKEEIEEKNRENLKKIQELQNEKETLATQLD 893
Query: 109 YQSNK---EQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTR 165
K EQ LLE + ++ + ++ E I + T+ ++ + LT+
Sbjct: 894 LAETKAESEQLARGLLEEQYFELTQESKKAASRNRQE---ITDKDHTVSRLEEANSMLTK 950
Query: 166 HPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRT 225
E + + + +EL E ++ +E+ + E EE K F +N E +T
Sbjct: 951 DIE---ILRRENEELTEKMK-------KAEEEYKLEKEEEISNLKAAFEKNINTERTLKT 1000
Query: 226 E 226
+
Sbjct: 1001 Q 1001
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 35.0 bits (79), Expect = 0.17
Identities = 55/259 (21%), Positives = 109/259 (42%), Gaps = 26/259 (10%)
Query: 53 GKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSN 112
GKE A L+ Q T L+R I ++ QEL ++ ++ L++ +++
Sbjct: 375 GKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEKDLE--------EAH 426
Query: 113 KEQAPSD-LLEFLHSQIDKAEVSIGAK---LPSEYGVIPFES-FTLMKVFQLEMGLTRHP 167
+E++ D + L ++++K + + + + Y + ES L Q+ LT
Sbjct: 427 REKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIKHLTEST 486
Query: 168 EEKPVRKDKRDEL-VEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTE 226
+K V K +E +EVI+ ++ +D + EG + EK + + + E
Sbjct: 487 NQKDVLLQKFNEKDLEVIQQNCYLM---AAEDLELRSEGLITEKCSSQQPPGSKTIFSKE 543
Query: 227 RDKGTQYELFFK--KADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEA 284
+ + + YE + K + Y H+ +S+ I+ ++ +N I L ++ E
Sbjct: 544 KKQSSDYEELIQVLKKEQDIYTHLV-------KSLQESDSINNLQAELNKIFALRKQLEQ 596
Query: 285 FVQFMQNFRDVCIHQDKKI 303
V QN R Q +I
Sbjct: 597 DVLSYQNLRKTLEEQISEI 615
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 35.0 bits (79), Expect = 0.17
Identities = 55/259 (21%), Positives = 109/259 (42%), Gaps = 26/259 (10%)
Query: 53 GKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSN 112
GKE A L+ Q T L+R I ++ QEL ++ ++ L++ +++
Sbjct: 375 GKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEKDLE--------EAH 426
Query: 113 KEQAPSD-LLEFLHSQIDKAEVSIGAK---LPSEYGVIPFES-FTLMKVFQLEMGLTRHP 167
+E++ D + L ++++K + + + + Y + ES L Q+ LT
Sbjct: 427 REKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIKHLTEST 486
Query: 168 EEKPVRKDKRDEL-VEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYYRTE 226
+K V K +E +EVI+ ++ +D + EG + EK + + + E
Sbjct: 487 NQKDVLLQKFNEKDLEVIQQNCYLM---AAEDLELRSEGLITEKCSSQQPPGSKTIFSKE 543
Query: 227 RDKGTQYELFFK--KADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAERTEA 284
+ + + YE + K + Y H+ +S+ I+ ++ +N I L ++ E
Sbjct: 544 KKQSSDYEELIQVLKKEQDIYTHLV-------KSLQESDSINNLQAELNKIFALRKQLEQ 596
Query: 285 FVQFMQNFRDVCIHQDKKI 303
V QN R Q +I
Sbjct: 597 DVLSYQNLRKTLEEQISEI 615
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 35.0 bits (79), Expect = 0.17
Identities = 58/288 (20%), Positives = 122/288 (42%), Gaps = 54/288 (18%)
Query: 54 KEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQ---ERRNVGANGIGYQ 110
KE Q +L E+ ++ + ++QI LK+E++ + ++ LQ E +V ++G+
Sbjct: 1003 KEERQRMLLEKS--FELKTQDYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGL--- 1057
Query: 111 SNKEQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEK 170
KAEV A+L + I + + ++ + +H + +
Sbjct: 1058 -------------------KAEV---ARLSKQVKTISEFEKEIELLQAQKIDVEKHVQSQ 1095
Query: 171 PVRKDKRDELVEVIEAGLEVINNPD-------EDDEQEDEEGPL--GEKLIFNENDFVEG 221
+++ R+++ E+ + LE + D ED E +E+G L + + +E
Sbjct: 1096 --KREMREKMSEITKQLLESYDIEDVRSRLSVEDLEHLNEDGELWFAYEGLKKATRVLES 1153
Query: 222 YYRTERDKGTQYELFFKKADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAER 281
++++++D + K+ + ++ V L + L K+ E DI SI + + L
Sbjct: 1154 HFQSQKD------CYEKEIEALNFKVVHLSQEINHLQKLFREENDINESIRHEVTRLTSE 1207
Query: 282 TEAFVQFMQNFRDV-CIHQDKKIHLTVVYFGKEGLSKVKSILESVTSE 328
F Q ++ QD +I L E K+K LE ++++
Sbjct: 1208 NMMIPDFKQQISELEKQKQDLEIRL------NEQAEKMKGKLEELSNQ 1249
>gi|157785668 coiled-coil domain containing 39 [Homo sapiens]
Length = 941
Score = 35.0 bits (79), Expect = 0.17
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 63 EQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDLLE 122
E EEH++ A +R++ ++K E+Q + +M S+ E+++ NGI + K L+
Sbjct: 81 ESEEHFKAIA---QRELGRVKDEIQRLENEMASILEKKSDKENGIFKATQK-------LD 130
Query: 123 FLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQ--------LEMGLTRHPEE-KPVR 173
L Q++ + ++ A L E ++ TL K Q L + L R E R
Sbjct: 131 GLKCQMNWDQQALEAWL-EESAHKDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQKR 189
Query: 174 KDKRDELVEVIEAGLEV 190
K +EL E I A LE+
Sbjct: 190 KILDNELTETISAQLEL 206
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 34.7 bits (78), Expect = 0.23
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 61 LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDL 120
LQ+Q E Q +T K Q+ +LK+E +E ++ + LQ+++ Q +++ S L
Sbjct: 862 LQDQLEAEQYFSTLYKTQVRELKEECEEKTKLGKELQQKK---------QELQDERDS-L 911
Query: 121 LEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDEL 180
L + KA+ A+ +E E +MK +++ + RH +E KD
Sbjct: 912 AAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEMMARHKQEL-TEKDATIAS 970
Query: 181 VEVIEAGL--EVINNPDEDDEQEDEEGPLGEKL 211
+E L +V N +E +E ++ + E+L
Sbjct: 971 LEETNRTLTSDVANLANEKEELNNKLKDVQEQL 1003
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 34.3 bits (77), Expect = 0.30
Identities = 39/186 (20%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Query: 44 LPGVVGENYGKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVG 103
L +GE+ ++ + + ++ + L++Q+ Q +QE ++ +++ LQ+ +
Sbjct: 1613 LAQALGESVFEKGLREKVTQENTSVRWELGQLQQQLKQKEQEASQLKQQVEMLQDHKR-- 1670
Query: 104 ANGIGYQSNKEQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGL 163
+G S E + L E L A + E + E L + F+LE+
Sbjct: 1671 -ELLGSPSLGENCVAGLKERLWKLESSALEQQKIQSQQENTIKQLEQ--LRQRFELEIER 1727
Query: 164 TRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEGYY 223
+ +K R+D+ +EL +V ++ + ++ + EQE EE ++++ +E +EG
Sbjct: 1728 MKQMHQKD-REDQEEELEDVRQSCQKRLHQLEMQLEQEYEE----KQMVLHEKQDLEGLI 1782
Query: 224 RTERDK 229
T D+
Sbjct: 1783 GTLCDQ 1788
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 34.3 bits (77), Expect = 0.30
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 160 EMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFV 219
E G EE+ V +D ++ E +E E DED E+E+EE E+ E +
Sbjct: 193 EQGNNTENEEEGVEEDVEED--EEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEY 250
Query: 220 EGYYRTERDKGTQYELFFKKAD 241
E R ++++G Y+ + +D
Sbjct: 251 EQDERDQKEEGNDYDTRSEASD 272
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 34.3 bits (77), Expect = 0.30
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 160 EMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFV 219
E G EE+ V +D ++ E +E E DED E+E+EE E+ E +
Sbjct: 193 EQGNNTENEEEGVEEDVEED--EEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEY 250
Query: 220 EGYYRTERDKGTQYELFFKKAD 241
E R ++++G Y+ + +D
Sbjct: 251 EQDERDQKEEGNDYDTRSEASD 272
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 33.9 bits (76), Expect = 0.39
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 55 EYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKE 114
++ Q+ LQE EE + L+RQ+ + ++++ EK+++ QS+ E
Sbjct: 318 QHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEKLQA--------------QSDYE 363
Query: 115 QAPSDLLEFLHSQIDKAEVSI--GAKLPSEYGVIPFESFTLMKVFQLEM-GLTRHPEEKP 171
+ ++L ++ + S+ G P + +I E+F + F LE L PEE P
Sbjct: 364 EIKTELSILKAMKLASSTCSLPQGMAKPEDSLLIAKEAFFPTQKFLLEKPSLLASPEEDP 423
Query: 172 VRKD 175
D
Sbjct: 424 SEDD 427
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 33.9 bits (76), Expect = 0.39
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 168 EEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLG 208
EE V +++ +E E E E + DEDDE++D+EG LG
Sbjct: 13 EEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLG 53
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 33.9 bits (76), Expect = 0.39
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 53 GKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEM-------SEKMRSLQERRNVGAN 105
G E LLQE+ E Q R+ L+R++AQL+++++++ E ++ +
Sbjct: 819 GTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLEE 878
Query: 106 GIGYQSNKEQAPSDLLEFLHSQIDKAEVSIG-----AKLPSEYGVIPFESFTLMKVFQLE 160
+ + +E+ L ++++ A+ ++ K SE E ++ + E
Sbjct: 879 ALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKNE 938
Query: 161 MGLTRHPEEKPVRKDKRDELVEVIEAG----LEVINNPDEDDEQEDEE 204
M R K + K ++ E+ +++EA LE+ N DE E+ E
Sbjct: 939 MENERWHLGKTIEKLQK-EMADIVEASRTSTLELQNQLDEYKEKNRRE 985
Score = 30.4 bits (67), Expect = 4.3
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 10/189 (5%)
Query: 42 ASLPGVVGENYGKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRN 101
A+L + ++ K + LQ++ E + ++ Q+K E ++ ++R LQ++ +
Sbjct: 649 ANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLS 708
Query: 102 VGANGIGYQSNKEQAPSDLL--EFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQL 159
+ + E L E L ++ D ++ I + + T +K L
Sbjct: 709 EMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG-AL 767
Query: 160 EMGLTRHPEEKPVRKDKRD-------ELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLI 212
+ ++ H +E K++ D E VE +EV+ + EQ+ + KL+
Sbjct: 768 KEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLL 827
Query: 213 FNENDFVEG 221
EN+ ++G
Sbjct: 828 QEENEKLQG 836
>gi|28195388 RAB11 family interacting protein 4 (class II) [Homo
sapiens]
Length = 637
Score = 33.9 bits (76), Expect = 0.39
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 24/192 (12%)
Query: 82 LKQELQEMSEKMRSLQERRNVGANGIGYQ----SNKEQAPSDLLEFLHSQIDKAEVSIGA 137
L +L+ + +++ R + + G Q SN + + ID + I
Sbjct: 283 LLNDLEARLKNLKANSPNRKISSTAFGRQLMHSSNFSSSNGSTEDLFRDSIDSCDNDITE 342
Query: 138 KLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDED 197
K+ SF KV +LE + + K K + +LV + E++ + +
Sbjct: 343 KV----------SFLEKKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETT 392
Query: 198 DEQEDEEGPLGEKLIFNENDFVEGYYRTERDKGTQYELFFKKADLTEYRHVTLFRPFGPL 257
EQ EE + E Y + ER+K T+ EL + E + L R
Sbjct: 393 AEQALEEEARRHR---------EAYGKLEREKATEVELLNARVQQLEEENTEL-RTTVTR 442
Query: 258 MKVKSEMIDITR 269
+K ++E +D R
Sbjct: 443 LKSQTEKLDEER 454
Score = 29.6 bits (65), Expect = 7.3
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 61 LQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQER------------RNVGANGIG 108
L+E+ +T T LK Q +L +E Q MS+++ R + N +
Sbjct: 429 LEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLE 488
Query: 109 YQSNKEQAPSDLLEFLHSQIDKAEV 133
+Q +E A +L+E L +++ ++
Sbjct: 489 FQKERE-ATQELIEDLRKELEHLQM 512
>gi|23943928 hypothetical protein LOC140680 [Homo sapiens]
Length = 363
Score = 33.9 bits (76), Expect = 0.39
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 34/151 (22%)
Query: 50 ENYGKEYYQALLQEQEEHYQTRAT-------SLKRQIAQLKQELQEMSEKMRSLQERRNV 102
EN + +ALLQ+Q+ T AT S K+++ QLK ELQE EK +
Sbjct: 137 ENSTTLHVRALLQQQD----TLATIIDILEYSNKKRLQQLKSELQEWEEKKKCKMSYLEQ 192
Query: 103 GANGIGYQSNKEQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMG 162
A + + K Q + + FL + +D EY + + TLM+ Q
Sbjct: 193 QAEQLNAKIEKTQ---EEVNFLSTYMD-----------HEYSIKSVQISTLMRQLQ---- 234
Query: 163 LTRHPEEKPVRKDKRDELVEVIEAGLEVINN 193
+ K ++D+ D+L E+ LE +++
Sbjct: 235 -----QVKDSQQDELDDLGEMRRKVLESLSD 260
>gi|21359846 prospero homeobox 1 [Homo sapiens]
Length = 737
Score = 33.5 bits (75), Expect = 0.51
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 58 QALLQEQEEHYQTRATSLKRQIA----QLKQELQEMSEKMRSLQER 99
Q L Q+Q++ +Q ++ K Q QLKQ+L++M +++R LQE+
Sbjct: 211 QKLPQQQQQSFQQLVSARKEQKREERRQLKQQLEDMQKQLRQLQEK 256
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,836,828
Number of Sequences: 37866
Number of extensions: 964729
Number of successful extensions: 5751
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 5278
Number of HSP's gapped (non-prelim): 610
length of query: 542
length of database: 18,247,518
effective HSP length: 107
effective length of query: 435
effective length of database: 14,195,856
effective search space: 6175197360
effective search space used: 6175197360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.