Guide to the Human Genome
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Name: FBXW5 Sequence: fasta or formatted (566aa) NCBI GI: 24308129
Description:

F-box and WD repeat domain containing 5

Referenced in:

Cullins and SCF Complexes
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         44           2
 C cysteine            1.9         11           1
 D aspartate           6.9         39           2
 E glutamate           5.1         29           2
 F phenylalanine       4.8         27           2
 G glycine             5.3         30           2
 H histidine           3.4         19           1
 I isoleucine          4.2         24           2
 K lysine              2.5         14           1
 L leucine            10.4         59           3
 M methionine          1.8         10           1
 N asparagine          3.4         19           2
 P proline             5.7         32           3
 Q glutamine           4.2         24           1
 R arginine            7.4         42           2
 S serine              8.3         47           3
 T threonine           4.8         27           2
 V valine              7.2         41           2
 W tryptophan          1.9         11           1
 Y tyrosine            3.0         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box and WD repeat domain containing 5 
WDR26                 0.025   WD repeat domain 26 isoform b 
WDR26                 0.025   WD repeat domain 26 isoform a 
TBL1Y                 0.021   transducin beta-like 1Y 
TBL1Y                 0.021   transducin beta-like 1Y 
TBL1Y                 0.021   transducin beta-like 1Y 
TBL1X                 0.020   transducin beta-like 1X isoform b 
TBL1X                 0.020   transducin beta-like 1X isoform b 
TBL1X                 0.020   transducin beta-like 1X isoform a 
TBL1X                 0.020   transducin beta-like 1X isoform a 
PAFAH1B1              0.019   platelet-activating factor acetylhydrolase, isoform I...
WDR23                 0.018   WD repeat domain 23 isoform 1 
WDR23                 0.018   WD repeat domain 23 isoform 2 
KATNB1                0.017   katanin p80 subunit B 1 
TBL1XR1               0.017   transducin (beta)-like 1 X-linked receptor 1 
FBXW7                 0.017   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.017   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.017   F-box and WD repeat domain containing 7 isoform 2 [H...
CIAO1                 0.017   WD repeat domain 39 
PRPF19                0.015   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
FBXO11                0.015   F-box only protein 11 isoform 1 
FBXO11                0.015   F-box only protein 11 isoform 2 
FBXO11                0.015   F-box only protein 11 isoform 3 
COPB2                 0.015   coatomer protein complex, subunit beta 2 (beta prime)...
DTL                   0.014   denticleless homolog 
APAF1                 0.013   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.013   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.013   apoptotic peptidase activating factor 1 isoform b [Ho...
APAF1                 0.013   apoptotic peptidase activating factor 1 isoform a [Ho...
WSB2                  0.013   WD SOCS-box protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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