Guide to the Human Genome
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Name: IRF2BP1 Sequence: fasta or formatted (584aa) NCBI GI: 24308115
Description:

interferon regulatory factor 2 binding protein 1

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         78           5
 C cysteine            2.7         16           2
 D aspartate           3.1         18           1
 E glutamate           7.2         42           2
 F phenylalanine       3.1         18           1
 G glycine            11.3         66           5
 H histidine           1.9         11           1
 I isoleucine          1.2          7           1
 K lysine              3.8         22           2
 L leucine             8.7         51           2
 M methionine          1.5          9           1
 N asparagine          1.5          9           1
 P proline            11.0         64           3
 Q glutamine           4.1         24           3
 R arginine            7.5         44           3
 S serine              6.5         38           2
 T threonine           3.4         20           2
 V valine              5.0         29           1
 W tryptophan          1.2          7           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon regulatory factor 2 binding protein 1 [Ho... 
C14orf4               0.332   chromosome 14 open reading frame 4 
IRF2BP2               0.194   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.142   interferon regulatory factor 2 binding protein 2 is...
MXRA7                 0.022   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 1 
TNKS                  0.020   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TAF4                  0.019   TBP-associated factor 4 
SFPQ                  0.019   splicing factor proline/glutamine rich (polypyrimidin...
RFWD2                 0.017   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.017   ring finger and WD repeat domain 2 isoform d24 [Homo...
MICALL1               0.017   molecule interacting with Rab13 
INPPL1                0.017   inositol polyphosphate phosphatase-like 1 
LOC643355             0.016   PREDICTED: hypothetical protein 
LOC643355             0.016   PREDICTED: hypothetical protein 
CGREF1                0.016   cell growth regulator with EF-hand domain 1 
ATN1                  0.016   atrophin-1 
ATN1                  0.016   atrophin-1 
ONECUT3               0.016   one cut homeobox 3 
CASKIN1               0.016   CASK interacting protein 1 
ARID1A                0.016   AT rich interactive domain 1A isoform a 
ARID1A                0.016   AT rich interactive domain 1A isoform b 
HCN2                  0.015   hyperpolarization activated cyclic nucleotide-gated...
LOC100127891          0.015   PREDICTED: hypothetical protein 
LOC100128074          0.014   PREDICTED: hypothetical protein 
GRIN2D                0.014   N-methyl-D-aspartate receptor subunit 2D precursor ...
FOXL1                 0.014   forkhead box L1 
CPSF6                 0.014   cleavage and polyadenylation specific factor 6, 68 ...
PCLO                  0.014   piccolo isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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