Guide to the Human Genome
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Name: CACNG5 Sequence: fasta or formatted (275aa) NCBI GI: 22027551
Description:

voltage-dependent calcium channel gamma-5 subunit isoform a

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [296aa] voltage-dependent calcium channel gamma-5 subunit isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         16           2
 C cysteine            2.5          7           1
 D aspartate           3.3          9           1
 E glutamate           4.4         12           2
 F phenylalanine       6.5         18           2
 G glycine             6.5         18           1
 H histidine           1.8          5           1
 I isoleucine          5.8         16           1
 K lysine              2.5          7           1
 L leucine            11.3         31           2
 M methionine          4.4         12           1
 N asparagine          4.0         11           2
 P proline             4.7         13           1
 Q glutamine           2.2          6           1
 R arginine            5.1         14           1
 S serine             11.6         32           3
 T threonine           4.7         13           1
 V valine              6.2         17           2
 W tryptophan          1.5          4           1
 Y tyrosine            5.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent calcium channel gamma-5 subunit is... 
CACNG7                0.730   voltage-dependent calcium channel gamma-7 subunit [H...
CACNG5                0.665   voltage-dependent calcium channel gamma-5 subunit iso...
CACNG4                0.187   voltage-dependent calcium channel gamma-4 subunit [Ho...
CACNG2                0.178   voltage-dependent calcium channel gamma-2 subunit [Ho...
CACNG3                0.174   voltage-dependent calcium channel gamma-3 subunit [Ho...
CACNG8                0.174   voltage-dependent calcium channel gamma-8 subunit [H...
TMEM114               0.045   PREDICTED: transmembrane protein 114 
TMEM114               0.045   transmembrane protein 114 
CACNG1                0.043   voltage-dependent calcium channel gamma-1 subunit [Ho...
TMEM114               0.041   PREDICTED: transmembrane protein 114, partial [Homo...
CLDN19                0.032   claudin 19 isoform a 
CLDN19                0.032   claudin 19 isoform b 
TMEM178               0.032   transmembrane protein 178 
CLDN1                 0.028   claudin 1 
CLDN7                 0.022   claudin 7 
CLDN10                0.022   claudin 10 isoform b 
LIM2                  0.021   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
PMP22                 0.021   peripheral myelin protein 22 
PMP22                 0.021   peripheral myelin protein 22 
PMP22                 0.021   peripheral myelin protein 22 
CLDND1                0.021   claudin domain containing 1 protein isoform d 
CLDND1                0.021   claudin domain containing 1 protein isoform a 
CLDND1                0.021   claudin domain containing 1 protein isoform b 
CLDND1                0.021   claudin domain containing 1 protein isoform a 
CLDND1                0.021   claudin domain containing 1 protein isoform a 
CLDND1                0.021   claudin domain containing 1 protein isoform a 
GSG1L                 0.021   GSG1-like isoform 1 
LOC644070             0.017   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.017   PREDICTED: germ cell-specific gene 1-like protein 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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