Guide to the Human Genome
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Name: PMP22 Sequence: fasta or formatted (160aa) NCBI GI: 4505907
Description:

peripheral myelin protein 22

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt mRNA [160aa] peripheral myelin protein 22
alt mRNA [160aa] peripheral myelin protein 22
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         11           3
 C cysteine            2.5          4           1
 D aspartate           1.2          2           1
 E glutamate           1.9          3           1
 F phenylalanine       6.9         11           2
 G glycine             5.6          9           2
 H histidine           3.8          6           2
 I isoleucine          9.4         15           2
 K lysine              1.2          2           1
 L leucine            15.6         25           5
 M methionine          1.9          3           1
 N asparagine          3.1          5           1
 P proline             1.9          3           1
 Q glutamine           3.8          6           1
 R arginine            2.5          4           1
 S serine             11.2         18           3
 T threonine           5.0          8           1
 V valine              8.8         14           1
 W tryptophan          3.1          5           1
 Y tyrosine            3.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peripheral myelin protein 22 
PMP22                 1.000   peripheral myelin protein 22 
PMP22                 1.000   peripheral myelin protein 22 
EMP3                  0.367   epithelial membrane protein 3 
EMP2                  0.360   epithelial membrane protein 2 
EMP1                  0.343   epithelial membrane protein 1 
LOC391359             0.172   PREDICTED: similar to hCG1784039 
CLDND2                0.081   claudin domain containing 2 
CLDN19                0.081   claudin 19 isoform a 
CLDN19                0.081   claudin 19 isoform b 
CLDN15                0.067   claudin 15 
LOC644070             0.064   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.064   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.064   PREDICTED: germ cell-specific gene 1-like protein 2...
CLDN10                0.064   claudin 10 isoform b 
CLDN10                0.064   claudin 10 isoform a 
LIM2                  0.061   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
LOC391359             0.054   PREDICTED: similar to hCG1784039 
LOC391359             0.054   PREDICTED: hypothetical protein LOC391359 
CLDN18                0.054   claudin 18 isoform 1 
CLDN18                0.051   claudin 18 isoform 2 
TMEM47                0.047   transmembrane protein 47 
PERP                  0.044   PERP, TP53 apoptosis effector 
LIM2                  0.040   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
CLDN10                0.040   claudin 10 isoform a_i1 
CACNG5                0.037   voltage-dependent calcium channel gamma-5 subunit is...
CLDN4                 0.037   claudin 4 
GSG1L                 0.037   GSG1-like isoform 1 
CLDND1                0.034   claudin domain containing 1 protein isoform d 
CLDND1                0.034   claudin domain containing 1 protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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