Guide to the Human Genome
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Name: LOC100290187 Sequence: fasta or formatted (241aa) NCBI GI: 239752455
Description:

PREDICTED: hypothetical protein XP_002348281

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         28           3
 C cysteine            0.4          1           1
 D aspartate           5.0         12           1
 E glutamate           5.4         13           2
 F phenylalanine       0.8          2           1
 G glycine            10.4         25           2
 H histidine           6.6         16           1
 I isoleucine          1.7          4           1
 K lysine              2.1          5           1
 L leucine            10.4         25           2
 M methionine          0.8          2           1
 N asparagine          0.8          2           1
 P proline             7.1         17           3
 Q glutamine           6.6         16           2
 R arginine            5.0         12           1
 S serine              7.5         18           2
 T threonine           5.0         12           1
 V valine             11.2         27           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348281 
LOC100292149          0.052   PREDICTED: hypothetical protein 
PRSS12                0.017   neurotrypsin precursor 
AUTS2                 0.015   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.015   autism susceptibility candidate 2 isoform 1 
FUSSEL18              0.013   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.013   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.013   PREDICTED: functional smad suppressing element 18 [...
C17orf49              0.013   hypothetical protein LOC124944 isoform 3 
C17orf49              0.013   hypothetical protein LOC124944 isoform 1 
C17orf49              0.013   hypothetical protein LOC124944 isoform 2 
USP31                 0.013   ubiquitin specific peptidase 31 
ONECUT3               0.013   one cut homeobox 3 
ZCCHC11               0.013   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.013   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.013   zinc finger, CCHC domain containing 11 isoform c [Ho...
LOC728940             0.011   PREDICTED: hypothetical protein 
LOC728940             0.011   PREDICTED: hypothetical protein 
LOC728940             0.011   PREDICTED: hypothetical protein 
ZMIZ1                 0.011   retinoic acid induced 17 
LOC100128648          0.011   PREDICTED: hypothetical protein 
LOC100128648          0.011   PREDICTED: hypothetical protein 
LOC100128648          0.011   PREDICTED: hypothetical protein 
CPEB3                 0.009   cytoplasmic polyadenylation element binding protein ...
CREB5                 0.009   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.009   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.009   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.009   cAMP responsive element binding protein 5 isoform al...
WNK2                  0.009   WNK lysine deficient protein kinase 2 
PRRT3                 0.009   proline-rich transmembrane protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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