Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239757940
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo s... 234 1e-62
gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo s... 234 1e-62
gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo s... 234 1e-62
gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens] 227 1e-60
gi|193788726 CSAG family, member 3 isoform b [Homo sapiens] 227 1e-60
gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens] 216 2e-57
gi|193788718 CSAG family, member 3 isoform a [Homo sapiens] 216 2e-57
gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens] 136 3e-33
gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens] 136 3e-33
gi|89941470 ankyrin repeat domain 34 [Homo sapiens] 30 0.32
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 29 0.71
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 29 0.93
gi|150170670 piccolo isoform 2 [Homo sapiens] 28 1.2
gi|150378539 piccolo isoform 1 [Homo sapiens] 28 1.2
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 28 1.2
gi|170784838 secreted frizzled-related protein 4 [Homo sapiens] 28 1.6
gi|62739186 complement factor H isoform a precursor [Homo sapiens] 28 1.6
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 28 2.1
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 28 2.1
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 28 2.1
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 28 2.1
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 28 2.1
gi|197927236 hypothetical protein LOC729627 [Homo sapiens] 27 2.7
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 27 2.7
gi|116829964 KiSS-1 metastasis-suppressor [Homo sapiens] 27 3.5
gi|5032123 synovial sarcoma, X breakpoint 4 isoform a [Homo sapi... 27 3.5
gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens] 27 3.5
gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens] 27 3.5
gi|239746445 PREDICTED: hypothetical protein XP_002344224 [Homo ... 27 3.5
gi|4503177 testis expressed 28 [Homo sapiens] 27 3.5
>gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 234 bits (596), Expect = 1e-62
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPG EQGPVKEVPGTKGSP
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
>gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 234 bits (596), Expect = 1e-62
Identities = 109/110 (99%), Positives = 109/110 (99%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPG EQGPVKEVPGTKGSP
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQGPVKEVPGTKGSP 110
>gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 234 bits (596), Expect = 1e-62
Identities = 109/110 (99%), Positives = 109/110 (99%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPG EQGPVKEVPGTKGSP
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQGPVKEVPGTKGSP 110
>gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens]
Length = 110
Score = 227 bits (579), Expect = 1e-60
Identities = 104/110 (94%), Positives = 107/110 (97%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPG E+GP+KEVPGTKGSP
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
>gi|193788726 CSAG family, member 3 isoform b [Homo sapiens]
Length = 110
Score = 227 bits (579), Expect = 1e-60
Identities = 104/110 (94%), Positives = 107/110 (97%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPG E+GP+KEVPGTKGSP
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
>gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens]
Length = 127
Score = 216 bits (551), Expect = 2e-57
Identities = 104/127 (81%), Positives = 107/127 (84%), Gaps = 17/127 (13%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKR-----------------LPRQPGXEQGPVKEV 103
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPG E+GP+KEV
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
Query: 104 PGTKGSP 110
PGTKGSP
Sbjct: 121 PGTKGSP 127
>gi|193788718 CSAG family, member 3 isoform a [Homo sapiens]
Length = 127
Score = 216 bits (551), Expect = 2e-57
Identities = 104/127 (81%), Positives = 107/127 (84%), Gaps = 17/127 (13%)
Query: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKR-----------------LPRQPGXEQGPVKEV 103
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPG E+GP+KEV
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
Query: 104 PGTKGSP 110
PGTKGSP
Sbjct: 121 PGTKGSP 127
>gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 136 bits (343), Expect = 3e-33
Identities = 64/73 (87%), Positives = 65/73 (89%)
Query: 38 ACWPAFTVLGEAWRDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQ 97
ACWPAFTVLGEA DQVDWSRL RDTGLVKMSRKPRASSP SNNHP TPKR PRQP E+
Sbjct: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
Query: 98 GPVKEVPGTKGSP 110
GPVKEVPGTKGSP
Sbjct: 66 GPVKEVPGTKGSP 78
>gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 136 bits (343), Expect = 3e-33
Identities = 64/73 (87%), Positives = 65/73 (89%)
Query: 38 ACWPAFTVLGEAWRDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQ 97
ACWPAFTVLGEA DQVDWSRL RDTGLVKMSRKPRASSP SNNHP TPKR PRQP E+
Sbjct: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65
Query: 98 GPVKEVPGTKGSP 110
GPVKEVPGTKGSP
Sbjct: 66 GPVKEVPGTKGSP 78
>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
Length = 496
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 65 LVKMSRKPRASSPLSN--NHPPTP-KRLPRQPGXEQGPVKEVPGTKGSP 110
L K P S PL HPP P KRL +P P + VP T+G P
Sbjct: 218 LPKPPDDPSPSEPLPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPTEGRP 266
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQ 97
R G + SR+ R+ SP S T KR R PG EQ
Sbjct: 379 RSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQ 415
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 28.9 bits (63), Expect = 0.93
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 44 TVLGEAWRDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHP-----PTPKRLPRQPGXEQG 98
T+LG R Q++ +LL DT + A+ PL+ +HP +P + P Q +G
Sbjct: 316 TLLGALARRQLNLGQLLEDTESYLQAFLAGAAGPLNGDHPGPGQSSSPDQAPPQLSKSKG 375
Query: 99 PVKEVPG 105
K G
Sbjct: 376 LPKSAWG 382
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 71 KPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
KP A P P P + P QP P+ + PGT P
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPP 352
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 71 KPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
KP A P P P + P QP P+ + PGT P
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPP 352
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 58 RLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
R +R L ++ RKPRAS L+ + PP PR P PV+ VP +G+P
Sbjct: 146 RRVRVEKLQEVVRKPRASQELAGDAPP-----PRPP----PPVRPVP--QGTP 187
>gi|170784838 secreted frizzled-related protein 4 [Homo sapiens]
Length = 346
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 46 LGEAWRDQ-----VDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQP 93
L E WRDQ + W L++ +K A S ++PP PK P P
Sbjct: 272 LVEKWRDQLSKRSIQWEERLQEQRRTVQDKKKTAGRT-SRSNPPKPKGKPPAP 323
>gi|62739186 complement factor H isoform a precursor [Homo sapiens]
Length = 1231
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 5 LIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWS 57
LI L E +K K KEF H +NI+ RC W + W +V+ S
Sbjct: 758 LIILEEHLKNK------KEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCS 804
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 64 GLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
G VK +K + + P N PP P P PG QGP +PG G P
Sbjct: 168 GPVKNKKKGKKAGPPGPNGPPGP---PGPPG-PQGP-PGIPGIPGIP 209
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 64 GLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
G VK +K + + P N PP P P PG QGP +PG G P
Sbjct: 168 GPVKNKKKGKKAGPPGPNGPPGP---PGPPG-PQGP-PGIPGIPGIP 209
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 72 PRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
P + P ++ P PK P +PG + PG KG P
Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 72 PRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
P + P ++ P PK P +PG + PG KG P
Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 72 PRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110
P + P ++ P PK P +PG + PG KG P
Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
>gi|197927236 hypothetical protein LOC729627 [Homo sapiens]
Length = 266
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 72 PRASSPLSNNHPPTPKRLP 90
PR SP + HPP PKR P
Sbjct: 238 PRVGSPGPHAHPPLPKRPP 256
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 3 IGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPA---------FTVLGEAWRDQ 53
I + ++ G+ R+DQGF ++M CE + P + VL
Sbjct: 497 IRTVAVIGGISREDQGF---------RLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVV 547
Query: 54 VDWSRLLRDTGLVKMSRKPRASSPLSNNHPPT 85
+D + + D G +K P+SN P T
Sbjct: 548 LDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 579
>gi|116829964 KiSS-1 metastasis-suppressor [Homo sapiens]
Length = 138
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 70 RKPRASSPLSN-----NHPPTPKRLPRQPGXEQGPVKEVPGTKGS 109
RKP A++ LS + PP P+QPG +++P +G+
Sbjct: 56 RKPAATARLSRRGTSLSPPPESSGSPQQPGLSAPHSRQIPAPQGA 100
>gi|5032123 synovial sarcoma, X breakpoint 4 isoform a [Homo
sapiens]
Length = 188
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 86 PKRLPRQPGXEQGPVKEVPGTKG 108
PK +P++P E+ +KEVP G
Sbjct: 109 PKIMPKKPAEEENGLKEVPEASG 131
>gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens]
Length = 231
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 76 SPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKG 108
SPL + PP+P R PR P G + +VP G
Sbjct: 7 SPLPD--PPSPFRSPRSPRTRSGCLPQVPSGVG 37
>gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens]
Length = 231
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 76 SPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKG 108
SPL + PP+P R PR P G + +VP G
Sbjct: 7 SPLPD--PPSPFRSPRSPRTRSGCLPQVPSGVG 37
>gi|239746445 PREDICTED: hypothetical protein XP_002344224 [Homo
sapiens]
Length = 231
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 76 SPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKG 108
SPL + PP+P R PR P G + +VP G
Sbjct: 7 SPLPD--PPSPFRSPRSPRTRSGCLPQVPSGVG 37
>gi|4503177 testis expressed 28 [Homo sapiens]
Length = 410
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKRL---PRQPGXEQGPV 100
R GL+ M A S +N PP+ K L P +PG E GPV
Sbjct: 128 RPEGLLLM-----AESDPANCEPPSEKALLSEPPEPGGEDGPV 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,242,307
Number of Sequences: 37866
Number of extensions: 242377
Number of successful extensions: 1389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 120
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.