Guide to the Human Genome
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Name: LOC100130935 Sequence: fasta or formatted (110aa) NCBI GI: 169216728
Description:

PREDICTED: similar to CSAG family, member 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {110aa} PREDICTED: similar to CSAG family, member 2
alt prot {110aa} PREDICTED: similar to CSAG family, member 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          4           1
 C cysteine            1.8          2           1
 D aspartate           3.6          4           1
 E glutamate           6.4          7           1
 F phenylalanine       3.6          4           1
 G glycine             8.2          9           1
 H histidine           1.8          2           1
 I isoleucine          2.7          3           1
 K lysine              9.1         10           1
 L leucine             9.1         10           2
 M methionine          2.7          3           1
 N asparagine          2.7          3           2
 P proline            10.0         11           2
 Q glutamine           4.5          5           1
 R arginine            9.1         10           1
 S serine              5.5          6           2
 T threonine           4.5          5           1
 V valine              6.4          7           1
 W tryptophan          3.6          4           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to CSAG family, member 2 
LOC100130935          1.000   PREDICTED: similar to CSAG family, member 2 
LOC100130935          0.991   PREDICTED: similar to CSAG family, member 2 
CSAG2                 0.967   CSAG family, member 2 isoform 2 
CSAG3                 0.967   CSAG family, member 3 isoform b 
CSAG2                 0.919   CSAG family, member 2 isoform 1 
CSAG3                 0.919   CSAG family, member 3 isoform a 
CSAG1                 0.540   chondrosarcoma associated gene 1 
CSAG1                 0.540   chondrosarcoma associated gene 1 
KIAA1602              0.024   hypothetical protein LOC57701 
ANKRD34A              0.024   ankyrin repeat domain 34 
CIR1                  0.024   CBF1 interacting corepressor 
SORBS2                0.014   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.014   sorbin and SH3 domain containing 2 isoform 4 
SFRP4                 0.014   secreted frizzled-related  protein 4 
LOC100128127          0.014   PREDICTED: hypothetical protein 
LOC100128127          0.014   PREDICTED: hypothetical protein 
LOC100128127          0.014   PREDICTED: hypothetical protein 
VPS37C                0.014   vacuolar protein sorting 37C 
ZNF324                0.014   zinc finger protein 324 
CFH                   0.014   complement factor H isoform a precursor 
LOC100133500          0.014   PREDICTED: hypothetical protein 
LOC100133500          0.014   PREDICTED: hypothetical protein 
PCLO                  0.014   piccolo isoform 2 
PCLO                  0.014   piccolo isoform 1 
PRB4                  0.014   proline-rich protein BstNI subfamily 4 precursor [Ho...
C15orf37              0.014   hypothetical protein LOC283687 
EDA                   0.014   ectodysplasin A isoform EDA-A2 
EDA                   0.014   ectodysplasin A isoform EDA-A1 
COCH                  0.014   cochlin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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