Guide to the Human Genome
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Name: CSAG1 Sequence: fasta or formatted (78aa) NCBI GI: 24234760
Description:

chondrosarcoma associated gene 1

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt mRNA [78aa] chondrosarcoma associated gene 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          5           1
 C cysteine            1.3          1           1
 D aspartate           3.8          3           1
 E glutamate           3.8          3           1
 F phenylalanine       3.8          3           1
 G glycine             7.7          6           1
 H histidine           1.3          1           1
 I isoleucine          0.0          0           0
 K lysine              9.0          7           1
 L leucine             3.8          3           1
 M methionine          2.6          2           1
 N asparagine          2.6          2           2
 P proline            12.8         10           1
 Q glutamine           2.6          2           1
 R arginine           10.3          8           1
 S serine             10.3          8           2
 T threonine           7.7          6           2
 V valine              6.4          5           1
 W tryptophan          2.6          2           1
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chondrosarcoma associated gene 1 
CSAG1                 1.000   chondrosarcoma associated gene 1 
CSAG2                 0.810   CSAG family, member 2 isoform 2 
CSAG3                 0.810   CSAG family, member 3 isoform b 
LOC100130935          0.803   PREDICTED: similar to CSAG family, member 2 
LOC100130935          0.803   PREDICTED: similar to CSAG family, member 2 
LOC100130935          0.782   PREDICTED: similar to CSAG family, member 2 
CSAG2                 0.732   CSAG family, member 2 isoform 1 
CSAG3                 0.732   CSAG family, member 3 isoform a 
TTBK2                 0.035   tau tubulin kinase 2 
SEC31B                0.028   SEC31 homolog B 
ZNF324B               0.021   zinc finger protein 324B 
KIAA1602              0.021   hypothetical protein LOC57701 
C10orf18              0.021   hypothetical protein LOC54906 
ROCK2                 0.014   Rho-associated, coiled-coil containing protein kinas...
YEATS2                0.014   YEATS domain containing 2 
C17orf53              0.014   hypothetical protein LOC78995 
SAMD14                0.014   sterile alpha motif domain containing 14 
MMP2                  0.007   matrix metalloproteinase 2 isoform b 
MMP2                  0.007   matrix metalloproteinase 2 isoform a preproprotein [...
TBX4                  0.007   T-box 4 
LOC100292725          0.007   PREDICTED: hypothetical protein 
LOC100134017          0.007   PREDICTED: hypothetical protein 
LOC100291204          0.007   PREDICTED: hypothetical protein XP_002348102 
LOC100288521          0.007   PREDICTED: hypothetical protein XP_002343785 
FAM83H                0.007   FAM83H 
KIAA1432              0.007   connexin 43-interacting protein 150 isoform b [Homo...
KIAA1432              0.007   connexin 43-interacting protein 150 isoform a 
LOC100288194          0.007   PREDICTED: hypothetical protein XP_002343605 
DACT1                 0.007   dapper 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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