BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] (227 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 466 e-132 gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 260 6e-70 gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 260 6e-70 gi|4504425 high-mobility group box 1 [Homo sapiens] 168 4e-42 gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 166 1e-41 gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 166 1e-41 gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 166 1e-41 gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 162 2e-40 gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 146 1e-35 gi|194688135 high-mobility group box 2 [Homo sapiens] 129 2e-30 gi|194688133 high-mobility group box 2 [Homo sapiens] 129 2e-30 gi|11321591 high-mobility group box 2 [Homo sapiens] 129 2e-30 gi|169212060 PREDICTED: high mobility group protein B3-like prot... 114 7e-26 gi|239745831 PREDICTED: high mobility group protein B3-like prot... 114 7e-26 gi|71143137 high-mobility group box 3 [Homo sapiens] 113 1e-25 gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 111 4e-25 gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 111 4e-25 gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 111 4e-25 gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 111 4e-25 gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 108 4e-24 gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 108 4e-24 gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 108 4e-24 gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 100 2e-21 gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 100 2e-21 gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 100 2e-21 gi|4507241 structure specific recognition protein 1 [Homo sapiens] 78 5e-15 gi|57232750 HMG2 like isoform 1 [Homo sapiens] 62 3e-10 gi|57232748 HMG2 like isoform 2 [Homo sapiens] 62 3e-10 gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 56 3e-08 gi|149408144 TOX high mobility group box family member 2 isoform... 55 4e-08 >gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] Length = 227 Score = 466 bits (1198), Expect = e-132 Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MSDSIGFKKKFRLQSGESEEAASGSHSHSHCSTLSSIETAPGQVRAKQALGDSALLKKKS 60 MSDSIGFKKKFRLQSGESEEAASGSHSHSHCSTLSSIETAPGQVRAKQALGDSALLKKKS Sbjct: 1 MSDSIGFKKKFRLQSGESEEAASGSHSHSHCSTLSSIETAPGQVRAKQALGDSALLKKKS 60 Query: 61 STQMLQSTSQSFLRSAQRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDV 120 STQMLQSTSQSFLRSAQRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDV Sbjct: 61 STQMLQSTSQSFLRSAQRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDV 120 Query: 121 AKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKK 180 AKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKK Sbjct: 121 AKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKK 180 Query: 181 EEDKMRNMKIKKMATNCLVWYRGCKLAWEFKAGSCWCTAQISYIRGW 227 EEDKMRNMKIKKMATNCLVWYRGCKLAWEFKAGSCWCTAQISYIRGW Sbjct: 181 EEDKMRNMKIKKMATNCLVWYRGCKLAWEFKAGSCWCTAQISYIRGW 227 >gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] Length = 214 Score = 260 bits (665), Expect = 6e-70 Identities = 133/154 (86%), Positives = 135/154 (87%), Gaps = 19/154 (12%) Query: 59 KSSTQMLQSTSQSFLRSAQR-------------------AETKMKFEDPNAPKSPPLAFF 99 +SSTQMLQSTSQSFLRSAQR AETKMKFEDPNAPKSPPLAFF Sbjct: 13 RSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFF 72 Query: 100 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG 159 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG Sbjct: 73 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG 132 Query: 160 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKM 193 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKK+ Sbjct: 133 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKI 166 >gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] Length = 214 Score = 260 bits (665), Expect = 6e-70 Identities = 133/154 (86%), Positives = 135/154 (87%), Gaps = 19/154 (12%) Query: 59 KSSTQMLQSTSQSFLRSAQR-------------------AETKMKFEDPNAPKSPPLAFF 99 +SSTQMLQSTSQSFLRSAQR AETKMKFEDPNAPKSPPLAFF Sbjct: 13 RSSTQMLQSTSQSFLRSAQRVKVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFF 72 Query: 100 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG 159 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG Sbjct: 73 MFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGG 132 Query: 160 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKM 193 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKK+ Sbjct: 133 KGKPDAAKKGAIKAEKCKKKKEEDKMRNMKIKKI 166 >gi|4504425 high-mobility group box 1 [Homo sapiens] Length = 215 Score = 168 bits (425), Expect = 4e-42 Identities = 83/108 (76%), Positives = 90/108 (83%), Gaps = 1/108 (0%) Query: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136 + ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI DVAKKLGEMWN A DDK Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141 Query: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 PYEKKA KLKEKYEKDIAA+ KGKPDAAKKG +KAEK KKKKEE++ Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE 189 Score = 36.6 bits (83), Expect = 0.018 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 142 DP P K AFF+ + + K K+HP S+ S+ +KK E W ++ +K +E Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63 Query: 143 AVKLKEKYEKDIAAF 157 A K +YE+++ + Sbjct: 64 AKADKARYEREMKTY 78 >gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] Length = 488 Score = 166 bits (421), Expect = 1e-41 Identities = 95/180 (52%), Positives = 113/180 (62%), Gaps = 24/180 (13%) Query: 29 SHCSTLSSIETAPGQVRAKQALGD-----SALLKKKSSTQ-------------MLQSTSQ 70 SHCSTLSSIETAPG+VR + S K S+ + M ++ Sbjct: 146 SHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKA 205 Query: 71 SFLRSAQ-----RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKL 124 + R + + ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS DVAKKL Sbjct: 206 HYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKL 265 Query: 125 GEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 GEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKKKEE++ Sbjct: 266 GEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEE 325 >gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] Length = 487 Score = 166 bits (421), Expect = 1e-41 Identities = 95/180 (52%), Positives = 113/180 (62%), Gaps = 24/180 (13%) Query: 29 SHCSTLSSIETAPGQVRAKQALGD-----SALLKKKSSTQ-------------MLQSTSQ 70 SHCSTLSSIETAPG+VR + S K S+ + M ++ Sbjct: 146 SHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKA 205 Query: 71 SFLRSAQ-----RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKL 124 + R + + ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS DVAKKL Sbjct: 206 HYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKL 265 Query: 125 GEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 GEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKKKEE++ Sbjct: 266 GEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEE 325 >gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] Length = 486 Score = 166 bits (421), Expect = 1e-41 Identities = 95/180 (52%), Positives = 113/180 (62%), Gaps = 24/180 (13%) Query: 29 SHCSTLSSIETAPGQVRAKQALGD-----SALLKKKSSTQ-------------MLQSTSQ 70 SHCSTLSSIETAPG+VR + S K S+ + M ++ Sbjct: 146 SHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKA 205 Query: 71 SFLRSAQ-----RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKL 124 + R + + ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS DVAKKL Sbjct: 206 HYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKL 265 Query: 125 GEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 GEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKKKEE++ Sbjct: 266 GEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEE 325 >gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] Length = 211 Score = 162 bits (411), Expect = 2e-40 Identities = 81/108 (75%), Positives = 89/108 (82%), Gaps = 1/108 (0%) Query: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136 + ETK KF+DPNAPK PP AFF+F SE PKIK EHPGLSI DVAKKLGEMWN A DDK Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141 Query: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 P EKKA KLKEKYEKDIAA+ KGKP+AAKKG +KAEK KKKKEE++ Sbjct: 142 QPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEE 189 Score = 29.6 bits (65), Expect = 2.2 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKK 142 DP P K AFF+ + + K K+H S+ S+ + K E W ++ +K +E Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHK-KKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDM 63 Query: 143 AVKLKEKYEKDIAAF 157 A K YE+ + + Sbjct: 64 AKADKTHYERQMKTY 78 >gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] Length = 879 Score = 146 bits (369), Expect = 1e-35 Identities = 74/108 (68%), Positives = 84/108 (77%), Gaps = 1/108 (0%) Query: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136 + E K KF+DPNAPK PPLAFF+F SE PKIK EHPGLSI DV KKL MWN A DK Sbjct: 756 KGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADK 815 Query: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 YEKKA KLKEKY+KDIAA+ KGKP++AKK +KAEK KKKKEE++ Sbjct: 816 QFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEE 863 Score = 28.5 bits (62), Expect = 4.9 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 110 KEHPGLSI--SDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAK 167 K++P S+ S+ KK E W I +K +E A K YE+++ + P K Sbjct: 703 KKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTY---IPPKGEK 759 Query: 168 KGAIKAEKCKKK 179 K K K+ Sbjct: 760 KKKFKDPNAPKR 771 >gi|194688135 high-mobility group box 2 [Homo sapiens] Length = 209 Score = 129 bits (325), Expect = 2e-30 Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 1/107 (0%) Query: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136 + + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D AKKLGEMW+ + DK Sbjct: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141 Query: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEED 183 PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK E + Sbjct: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPE 188 Score = 38.5 bits (88), Expect = 0.005 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 142 DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 179 A K +Y++++ + P KKG K K+ Sbjct: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97 >gi|194688133 high-mobility group box 2 [Homo sapiens] Length = 209 Score = 129 bits (325), Expect = 2e-30 Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 1/107 (0%) Query: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136 + + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D AKKLGEMW+ + DK Sbjct: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141 Query: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEED 183 PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK E + Sbjct: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPE 188 Score = 38.5 bits (88), Expect = 0.005 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 142 DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 179 A K +Y++++ + P KKG K K+ Sbjct: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97 >gi|11321591 high-mobility group box 2 [Homo sapiens] Length = 209 Score = 129 bits (325), Expect = 2e-30 Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 1/107 (0%) Query: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136 + + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D AKKLGEMW+ + DK Sbjct: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141 Query: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEED 183 PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK E + Sbjct: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPE 188 Score = 38.5 bits (88), Expect = 0.005 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 142 DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 179 A K +Y++++ + P KKG K K+ Sbjct: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97 >gi|169212060 PREDICTED: high mobility group protein B3-like protein-like [Homo sapiens] Length = 207 Score = 114 bits (285), Expect = 7e-26 Identities = 56/102 (54%), Positives = 72/102 (70%), Gaps = 1/102 (0%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNAPK PP FF+F SE CPK K +PG+ I DVAKKLGEMW + + +K PY + Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQ 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 A KLKEKYEKD+A + KGK D AK A A+K ++++ED+ Sbjct: 145 AAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEEDEDE 186 Score = 33.9 bits (76), Expect = 0.12 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%) Query: 87 DPNAPKSPPLAFFMFSS---EDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKA 143 DP PK A+ F E+ K ++ ++ +KK E W +++ +K + + A Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64 Query: 144 VKLKEKYEKDI----AAFGGKGK-PDAAKK 168 K Y+++I A GGK K P+A K+ Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94 >gi|239745831 PREDICTED: high mobility group protein B3-like protein-like [Homo sapiens] Length = 207 Score = 114 bits (285), Expect = 7e-26 Identities = 56/102 (54%), Positives = 72/102 (70%), Gaps = 1/102 (0%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNAPK PP FF+F SE CPK K +PG+ I DVAKKLGEMW + + +K PY + Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQ 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 A KLKEKYEKD+A + KGK D AK A A+K ++++ED+ Sbjct: 145 AAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKVEEEDEDE 186 Score = 33.9 bits (76), Expect = 0.12 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%) Query: 87 DPNAPKSPPLAFFMFSS---EDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKA 143 DP PK A+ F E+ K ++ ++ +KK E W +++ +K + + A Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64 Query: 144 VKLKEKYEKDI----AAFGGKGK-PDAAKK 168 K Y+++I A GGK K P+A K+ Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKR 94 >gi|71143137 high-mobility group box 3 [Homo sapiens] Length = 200 Score = 113 bits (283), Expect = 1e-25 Identities = 61/102 (59%), Positives = 72/102 (70%), Gaps = 3/102 (2%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNAPK PP FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY K Sbjct: 86 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITK 145 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184 A KLKEKYEKD+A + KGK D AK A A KK +EED+ Sbjct: 146 AAKLKEKYEKDVADYKSKGKFDGAKGPAKVAR--KKVEEEDE 185 Score = 33.9 bits (76), Expect = 0.12 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 87 DPNAPKSPPLAFFMFSS---EDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKA 143 DP PK A+ F E+ K ++ ++ +KK E W ++ +K +++ A Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64 Query: 144 VKLKEKYEKDI----AAFGGKGKPD 164 K +Y++++ A GGK K D Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKD 89 >gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo sapiens] Length = 204 Score = 111 bits (278), Expect = 4e-25 Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 3/131 (2%) Query: 57 KKKSSTQMLQSTSQSFLRSAQRAETK--MKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HP 113 K+KS + T + + K K +DP+APK PP FF+FSSE PKIK +P Sbjct: 52 KEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNP 111 Query: 114 GLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA 173 G+SI DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A Sbjct: 112 GISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVA 171 Query: 174 EKCKKKKEEDK 184 K ++++ED+ Sbjct: 172 WKKVEEEDEDE 182 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 87 DPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKL 146 DP PK A+ F + K+ ++ ++ +KK E W ++ +K +++ A Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64 Query: 147 KEKYEKDI--AAFGGKGKPD 164 K ++++ A GGK K D Sbjct: 65 KVHCDREMKGPAKGGKKKKD 84 >gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo sapiens] Length = 204 Score = 111 bits (278), Expect = 4e-25 Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 3/131 (2%) Query: 57 KKKSSTQMLQSTSQSFLRSAQRAETK--MKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HP 113 K+KS + T + + K K +DP+APK PP FF+FSSE PKIK +P Sbjct: 52 KEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNP 111 Query: 114 GLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA 173 G+SI DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A Sbjct: 112 GISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVA 171 Query: 174 EKCKKKKEEDK 184 K ++++ED+ Sbjct: 172 WKKVEEEDEDE 182 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 87 DPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKL 146 DP PK A+ F + K+ ++ ++ +KK E W ++ +K +++ A Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64 Query: 147 KEKYEKDI--AAFGGKGKPD 164 K ++++ A GGK K D Sbjct: 65 KVHCDREMKGPAKGGKKKKD 84 >gi|239742753 PREDICTED: similar to high mobility group box 3 isoform 2 [Homo sapiens] Length = 183 Score = 111 bits (278), Expect = 4e-25 Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 3/131 (2%) Query: 57 KKKSSTQMLQSTSQSFLRSAQRAETK--MKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HP 113 K+KS + T + + K K +DP+APK PP FF+FSSE PKIK +P Sbjct: 34 KEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNP 93 Query: 114 GLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA 173 G+SI DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A Sbjct: 94 GISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVA 153 Query: 174 EKCKKKKEEDK 184 K ++++ED+ Sbjct: 154 WKKVEEEDEDE 164 >gi|113416897 PREDICTED: similar to high mobility group box 3 isoform 1 [Homo sapiens] Length = 201 Score = 111 bits (278), Expect = 4e-25 Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 3/131 (2%) Query: 57 KKKSSTQMLQSTSQSFLRSAQRAETK--MKFEDPNAPKSPPLAFFMFSSEDCPKIKE-HP 113 K+KS + T + + K K +DP+APK PP FF+FSSE PKIK +P Sbjct: 52 KEKSKFDEMAKTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNP 111 Query: 114 GLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA 173 G+SI DVAKKLGEMWN + + +K PY K KLKEKYEKD+A KGK D +K+ A A Sbjct: 112 GISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVA 171 Query: 174 EKCKKKKEEDK 184 K ++++ED+ Sbjct: 172 WKKVEEEDEDE 182 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 87 DPNAPKSPPLAFFMFSSEDCPKIKEHPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKL 146 DP PK A+ F + K+ ++ ++ +KK E W ++ +K +++ A Sbjct: 5 DPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64 Query: 147 KEKYEKDI--AAFGGKGKPD 164 K ++++ A GGK K D Sbjct: 65 KVHCDREMKGPAKGGKKKKD 84 >gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo sapiens] Length = 208 Score = 108 bits (270), Expect = 4e-24 Identities = 59/110 (53%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNAPK PP FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY K Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTK 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGA-IKAEKCKKKKEEDKMRNMKIK 191 A KLKEKYEKD+ KGK AK+ A + +K +++ EED+ K K Sbjct: 145 AAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEK 194 >gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo sapiens] Length = 208 Score = 108 bits (270), Expect = 4e-24 Identities = 59/110 (53%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNAPK PP FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY K Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTK 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGA-IKAEKCKKKKEEDKMRNMKIK 191 A KLKEKYEKD+ KGK AK+ A + +K +++ EED+ K K Sbjct: 145 AAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEK 194 >gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo sapiens] Length = 208 Score = 108 bits (270), Expect = 4e-24 Identities = 59/110 (53%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNAPK PP FF+F SE PKIK +PG+SI DVAKKLGEMWN + + +K PY K Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTK 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGA-IKAEKCKKKKEEDKMRNMKIK 191 A KLKEKYEKD+ KGK AK+ A + +K +++ EED+ K K Sbjct: 145 AAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEK 194 >gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] Length = 201 Score = 99.8 bits (247), Expect = 2e-21 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 4/113 (3%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNA K P FF+F SE PKIK +PG+SI D+AKKLGEMW ++ +K PY K Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAK---KGAIKAEKCKKKKEEDKMRNMKIKK 192 A LKEKYEKD+A + KGK D+AK K A K K K K++E++ + KK Sbjct: 145 AADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKDKEDEEEEEEEEEKK 197 >gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] Length = 201 Score = 99.8 bits (247), Expect = 2e-21 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 4/113 (3%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNA K P FF+F SE PKIK +PG+SI D+AKKLGEMW ++ +K PY K Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAK---KGAIKAEKCKKKKEEDKMRNMKIKK 192 A LKEKYEKD+A + KGK D+AK K A K K K K++E++ + KK Sbjct: 145 AADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKDKEDEEEEEEEEEKK 197 >gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sapiens] Length = 201 Score = 99.8 bits (247), Expect = 2e-21 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 4/113 (3%) Query: 84 KFEDPNAPKSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKK 142 K +DPNA K P FF+F SE PKIK +PG+SI D+AKKLGEMW ++ +K PY K Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144 Query: 143 AVKLKEKYEKDIAAFGGKGKPDAAK---KGAIKAEKCKKKKEEDKMRNMKIKK 192 A LKEKYEKD+A + KGK D+AK K A K K K K++E++ + KK Sbjct: 145 AADLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKDKEDEEEEEEEEEKK 197 >gi|4507241 structure specific recognition protein 1 [Homo sapiens] Length = 709 Score = 78.2 bits (191), Expect = 5e-15 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 15/184 (8%) Query: 2 SDSIGFKKKFRLQSGESEEAASGSHSHSHCSTLSSIETAPGQVRAKQALGDSALLKKKSS 61 SD G + GE EE + + ++ SS E GDS +KK Sbjct: 471 SDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNE------------GDSDRDEKKRK 518 Query: 62 TQMLQSTSQSFLRSAQRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDV 120 Q+ ++ +S ++ K +DPNAPK P A+ ++ + KIK +HPG+SI+D+ Sbjct: 519 -QLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDL 577 Query: 121 AKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKK 180 +KK GE+W ++++ K +++KA + YEK + + G G+ +++K+ K +K K K Sbjct: 578 SKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVK 636 Query: 181 EEDK 184 E K Sbjct: 637 MEKK 640 >gi|57232750 HMG2 like isoform 1 [Homo sapiens] Length = 186 Score = 62.4 bits (150), Expect = 3e-10 Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Query: 82 KMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYE 140 K + DP P+ PP +F +F + ++K E+P S+ VAK G+MW+ + +KHPYE Sbjct: 84 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 143 Query: 141 KKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKKKK 180 ++ L+ KY +++ + + + +A KK + A +C+ K+ Sbjct: 144 QRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRGKR 182 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/48 (27%), Positives = 26/48 (54%) Query: 115 LSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGK 162 + + ++K E W I++ +K YE A K +Y++++ + GK K Sbjct: 36 VGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQEEMMNYVGKRK 83 >gi|57232748 HMG2 like isoform 2 [Homo sapiens] Length = 112 Score = 62.4 bits (150), Expect = 3e-10 Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Query: 82 KMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYE 140 K + DP P+ PP +F +F + ++K E+P S+ VAK G+MW+ + +KHPYE Sbjct: 10 KRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYE 69 Query: 141 KKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKA-EKCKKKK 180 ++ L+ KY +++ + + + +A KK + A +C+ K+ Sbjct: 70 QRVALLRAKYFEELELY--RKQCNARKKYRMSARNRCRGKR 108 >gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] Length = 621 Score = 55.8 bits (133), Expect = 3e-08 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 77 QRAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDD 135 Q+A K K +DPN P+ P A+ +F + IK ++P + +V+K + MW+ + E+ Sbjct: 209 QKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 268 Query: 136 KHPYEKKAVKLKEKYEKDIAAF 157 K Y++K K++Y K +AA+ Sbjct: 269 KQVYKRKTEAAKKEYLKALAAY 290 >gi|149408144 TOX high mobility group box family member 2 isoform a [Homo sapiens] Length = 506 Score = 55.5 bits (132), Expect = 4e-08 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 82 KMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDKHPYE 140 K K +DPN P+ P A+ +F + IK ++P + DV+K + MW+ + E+ K Y+ Sbjct: 237 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYK 296 Query: 141 KKAVKLKEKYEKDIAAFG----GKGKPDAAKKGAIKA 173 +K K++Y K +AA+ K PD + + +A Sbjct: 297 RKTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQA 333 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.126 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,573,999 Number of Sequences: 37866 Number of extensions: 351815 Number of successful extensions: 1641 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 52 Number of HSP's that attempted gapping in prelim test: 1411 Number of HSP's gapped (non-prelim): 220 length of query: 227 length of database: 18,247,518 effective HSP length: 99 effective length of query: 128 effective length of database: 14,498,784 effective search space: 1855844352 effective search space used: 1855844352 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.