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Search of human proteins with 239757699
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757699 PREDICTED: hypothetical protein [Homo sapiens] 561 e-160
gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo ... 561 e-160
gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo ... 561 e-160
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 45 5e-05
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 45 5e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 44 1e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 44 1e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 43 3e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 41 0.001
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 40 0.002
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 40 0.002
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 40 0.002
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 40 0.002
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 40 0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.005
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.006
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.006
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 38 0.008
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 38 0.011
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 38 0.011
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 38 0.011
gi|153792074 proline rich 12 [Homo sapiens] 38 0.011
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 37 0.014
gi|39812378 RAN binding protein 9 [Homo sapiens] 37 0.014
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|91208420 bassoon protein [Homo sapiens] 37 0.014
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 37 0.014
gi|94818738 C1q and tumor necrosis factor related protein 2 [Hom... 37 0.014
>gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 270
Score = 561 bits (1447), Expect = e-160
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA
Sbjct: 1 MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
Query: 61 GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP
Sbjct: 61 GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
Query: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG
Sbjct: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
Query: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL
Sbjct: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
Query: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
SVLLLANSEEGSEIWGKCWSLGRPAPQPSH
Sbjct: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
>gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo
sapiens]
Length = 270
Score = 561 bits (1447), Expect = e-160
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA
Sbjct: 1 MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
Query: 61 GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP
Sbjct: 61 GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
Query: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG
Sbjct: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
Query: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL
Sbjct: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
Query: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
SVLLLANSEEGSEIWGKCWSLGRPAPQPSH
Sbjct: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
>gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo
sapiens]
Length = 270
Score = 561 bits (1447), Expect = e-160
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA
Sbjct: 1 MDDLQDWDICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAA 60
Query: 61 GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP
Sbjct: 61 GERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPP 120
Query: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG
Sbjct: 121 PGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEG 180
Query: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL
Sbjct: 181 LRLAPRRSRDEGRRASPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSSPSELVPEL 240
Query: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
SVLLLANSEEGSEIWGKCWSLGRPAPQPSH
Sbjct: 241 SVLLLANSEEGSEIWGKCWSLGRPAPQPSH 270
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 45.4 bits (106), Expect = 5e-05
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P G + PQ PPPPG G++ R + GK
Sbjct: 47 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97
Query: 145 QGP----GNPEGP 153
QGP G P+GP
Sbjct: 98 QGPPPQGGKPQGP 110
Score = 36.2 bits (82), Expect = 0.031
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 31 EVPGLSFGGPQLSTP--GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGP 88
E P L G PQ +P G + G G G K + P P PQGP
Sbjct: 27 ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGP---PPP---GKPQGP 80
Query: 89 RPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKA--GNRPRLRGTAGGKAQG 146
P GD+ R+ PQ PPP G A G++ + + GK QG
Sbjct: 81 PPQ----------GDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQG 130
Query: 147 P-----GNPEGP 153
P NP+GP
Sbjct: 131 PPQQEGNNPQGP 142
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 45.4 bits (106), Expect = 5e-05
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P G + PQ PPPPG G++ R + GK
Sbjct: 47 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97
Query: 145 QGP----GNPEGP 153
QGP G P+GP
Sbjct: 98 QGPPPQGGKPQGP 110
Score = 35.0 bits (79), Expect = 0.069
Identities = 38/142 (26%), Positives = 49/142 (34%), Gaps = 25/142 (17%)
Query: 31 EVPGLSFGGPQLSTP--GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGP 88
E P L G PQ +P G + G G G K + P P PQGP
Sbjct: 27 ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGP---PPP---GKPQGP 80
Query: 89 RPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSR------------RKAGNRPRL 136
P R P + G PQ PPP G + + G++ +
Sbjct: 81 PPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQS 140
Query: 137 RGTAGGKAQGP-----GNPEGP 153
+ GK QGP NP+GP
Sbjct: 141 ARSPPGKPQGPPQQEGNNPQGP 162
Score = 35.0 bits (79), Expect = 0.069
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR-LRGTAGGK 143
PQGP PP P G + AR+ PQ PP ++ GN P+ AGG
Sbjct: 118 PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP--------QQEGNNPQGPPPPAGGN 169
Query: 144 AQGP-----GNPEGP 153
Q P G P+GP
Sbjct: 170 PQQPQAPPAGQPQGP 184
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 43.9 bits (102), Expect = 1e-04
Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 31 EVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRP 90
E P L G PQ + P G + G + P P PQGP P
Sbjct: 27 ESPSLIAGNPQGAPP-------------QGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPP 73
Query: 91 PSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGP--- 147
P P+ P G + PQ PPPPG G++ R + GK QGP
Sbjct: 74 PPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 124
Query: 148 -GN-PEGP 153
GN P+GP
Sbjct: 125 GGNQPQGP 132
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAG-NRPRLRGTAGGK 143
PQGP PP P+ P G + PQ PPPPG G N+ R + GK
Sbjct: 129 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK 179
Query: 144 AQGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 180 PQGPPPQGGNQPQGP 194
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 85 PQGPRPPSSSPRWPWGLGD-RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK 143
PQGP PP P+ P GD + AR+ PQ PPP G GN+P+ GK
Sbjct: 212 PQGPPPP-GKPQGPPPQGDNKSQSARSPPGKPQGPPPQG--------GNQPQGPPPPPGK 262
Query: 144 AQGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 263 PQGPPPQGGNKPQGP 277
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P G PQ PPP G G++ R + GK
Sbjct: 315 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG--------GSKSRSARSPPGKP 366
Query: 145 QGP-----GNPEGP 153
QGP NP+GP
Sbjct: 367 QGPPQQEGNNPQGP 380
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEP--PPPGSTVSRRKAGNRPRLRGTAGG 142
PQGP PP P+ P GD +R+SRS P +P PPP + GN+P+ G
Sbjct: 150 PQGPPPP-GKPQGPPPQGDN--KSRSSRSPPGKPQGPPP-------QGGNQPQGPPPPPG 199
Query: 143 KAQGP----GN-PEGP 153
K QGP GN P+GP
Sbjct: 200 KPQGPPPQGGNKPQGP 215
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P G + +R+ PQ PPP G GN+P+ GK
Sbjct: 274 PQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 325
Query: 145 QGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 326 QGPPPQGGNKPQGP 339
Score = 35.0 bits (79), Expect = 0.069
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP P GD+ R+ PQ PPP G GN+P+ GK
Sbjct: 98 PQGPPPQ----------GDKSRSPRSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 139
Query: 145 QGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 140 QGPPPQGGNKPQGP 153
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR-LRGTAGGK 143
PQGP PP P G + AR+ PQ PP ++ GN P+ AGG
Sbjct: 336 PQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPP--------QQEGNNPQGPPPPAGGN 387
Query: 144 AQGP-----GNPEGP 153
Q P G P+GP
Sbjct: 388 PQQPQAPPAGQPQGP 402
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 43.9 bits (102), Expect = 1e-04
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P G + PQ PPPPG G++ R + GK
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKK---------PQGPPPPGKPQGPPPQGDKSRSSQSPPGKP 219
Query: 145 QGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 220 QGPPPQGGNQPQGP 233
Score = 43.1 bits (100), Expect = 3e-04
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P G + PQ PPPPG G++ R + GK
Sbjct: 47 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 97
Query: 145 QGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 98 QGPPPQGGNQPQGP 111
Score = 43.1 bits (100), Expect = 3e-04
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P G + PQ PPPPG G++ R + GK
Sbjct: 108 PQGPPPPPGKPQGPPPQGG---------NRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP 158
Query: 145 QGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 159 QGPPPQGGNQPQGP 172
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP PP P+ P GD+ +++ PQ PPP G GN+P+ GK
Sbjct: 190 PQGP-PPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 240
Query: 145 QGP----GN-PEGP 153
QGP GN P+GP
Sbjct: 241 QGPPPQGGNKPQGP 254
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVS-RRKAGNRPRLRGTAGGK 143
PQGP PP P+ P G + PQ PPPPG + G++ + + GK
Sbjct: 230 PQGPPPPPGKPQGPPPQGG---------NKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 280
Query: 144 AQGP-----GNPEGP 153
QGP NP+GP
Sbjct: 281 PQGPPQQEGNNPQGP 295
Score = 37.7 bits (86), Expect = 0.011
Identities = 48/145 (33%), Positives = 55/145 (37%), Gaps = 29/145 (20%)
Query: 31 EVPGLSFGGPQLSTP--GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGP 88
E P L G PQ +P G + G G G K + P P PQGP
Sbjct: 27 ESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGP---PPP---GKPQGP 80
Query: 89 RP---PSSSPRWPWGL--------GDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLR 137
P S SPR P G G++ G PQ PPP G GNRP+
Sbjct: 81 PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG--------GNRPQ-G 131
Query: 138 GTAGGKAQGPGNPEGPSSLLPRLLP 162
GK QGP P+G S PR P
Sbjct: 132 PPPPGKPQGP-PPQGDKSRSPRSPP 155
Score = 35.0 bits (79), Expect = 0.069
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR-LRGTAGGK 143
PQGP PP P G + AR+ PQ PP ++ GN P+ AGG
Sbjct: 251 PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP--------QQEGNNPQGPPPPAGGN 302
Query: 144 AQGP-----GNPEGP 153
Q P G P+GP
Sbjct: 303 PQQPQAPPAGQPQGP 317
Score = 33.9 bits (76), Expect = 0.15
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 85 PQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
PQGP P GD+ R+ PQ PPP G GN+P+ GK
Sbjct: 138 PQGPPPQ----------GDKSRSPRSPPGKPQGPPPQG--------GNQPQGPPPPPGKP 179
Query: 145 QGP-----GNPEGP 153
QGP P+GP
Sbjct: 180 QGPPPQGGKKPQGP 193
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 42.7 bits (99), Expect = 3e-04
Identities = 40/124 (32%), Positives = 43/124 (34%), Gaps = 24/124 (19%)
Query: 33 PGLSFGGPQL-STPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
PG S G P L TPG+D E G A G G P P GPR
Sbjct: 415 PG-SVGAPGLRGTPGKDGERGEKGAAGEEGS--------------------PGPVGPRGD 453
Query: 92 SSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAG--NRPRLRGTAGGKAQGPGN 149
+P P G G R P P P G+ R G P RG G GP
Sbjct: 454 PGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPG 513
Query: 150 PEGP 153
P GP
Sbjct: 514 PSGP 517
Score = 39.3 bits (90), Expect = 0.004
Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 29/166 (17%)
Query: 41 QLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
+L PG + G G AG GL + ++P P +P QGP+ P P
Sbjct: 308 ELGLPGLKGDRGEKGEAGPAGPP--GLPGTTS-LFTPHPR-MPGEQGPKGEKGDPGLP-- 361
Query: 101 LGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GKAQGPGNPEGPSSLLP 158
G+ L R GPQ P P + A P G G G PG P GP +
Sbjct: 362 -GEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPG-PSGPPGSV- 418
Query: 159 RLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
GA GLR P + + G + + G SPG
Sbjct: 419 ---------GAP---------GLRGTPGKDGERGEKGAAGEEGSPG 446
Score = 35.0 bits (79), Expect = 0.069
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 27/150 (18%)
Query: 8 DICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGL 67
D+C P P G +PGL PG+ G + G AG +
Sbjct: 559 DVCNDCPPGPPG------------LPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGL-- 604
Query: 68 QKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR-LLGARASRSGPQEPPPPGSTVS 126
P P + PQG + + GD+ G P P PPG+
Sbjct: 605 ---------PGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGI 655
Query: 127 RRKAGNRPRLRGTAGGKAQGPGNPEGPSSL 156
AG P ++G+ G +GP P+GPS L
Sbjct: 656 AGAAGP-PGIQGSPG--KEGPPGPQGPSGL 682
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.8 bits (94), Expect = 0.001
Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 4/125 (3%)
Query: 33 PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPS 92
PG + PG D + GA A GA G G P P GP+ S
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGI--AGAPGFPGARGPSGPQGPGGPPGPKGNS 433
Query: 93 SSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GKAQGPGNP 150
P P GD G Q PP P +R A P G G G+ GPG+
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Query: 151 EGPSS 155
P +
Sbjct: 494 GFPGA 498
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 79 PICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPP-PPGSTVSRRKAGNRPRLR 137
P+ P GP+ P GDR + SG Q PP PPGS P +
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGS----------PGEQ 1129
Query: 138 GTAGGKAQGPGNPEGP 153
G +G A GP P GP
Sbjct: 1130 GPSG--ASGPAGPRGP 1143
Score = 32.3 bits (72), Expect = 0.45
Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 20/143 (13%)
Query: 20 GLGGALLIVTVEVPGLSFGGPQLST-----PGQDREAGADTAGGAAGERQVGLQKIEAEW 74
GLGG P LS+G + ST PG +G G G G Q +
Sbjct: 154 GLGGNF------APQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAP--GPQGFQGPP 205
Query: 75 WSPWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRP 134
P P GPR P P P GD + R G + PP P P
Sbjct: 206 GEPGEPGASGPMGPRGP---PGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLP 262
Query: 135 RLRGTAG----GKAQGPGNPEGP 153
++G G A+G P GP
Sbjct: 263 GMKGHRGFSGLDGAKGDAGPAGP 285
Score = 31.2 bits (69), Expect = 1.00
Identities = 53/184 (28%), Positives = 63/184 (34%), Gaps = 32/184 (17%)
Query: 45 PGQDREAGADTAGGAAGER----QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
PG GA A GA G G P P P GP P+
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909
Query: 101 LGDRLLGARASRSGPQEPPPP----GSTVSRRKAG--NRPRLRGTAG-----------GK 143
G+ R GP PP P GS + AG P +G AG G+
Sbjct: 910 RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE 969
Query: 144 AQGPGNPEGPSSLLPRLLPLLLLSGATRDR---RRLWGEGLRLAPRRSRDEGRRASPGNL 200
PG P GPS + P SGA+ +R + GL P S GR +PG
Sbjct: 970 RGFPGLP-GPSGEPGKQGP----SGASGERGPPGPMGPPGLAGPPGES---GREGAPGAE 1021
Query: 201 ASPG 204
SPG
Sbjct: 1022 GSPG 1025
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 40.8 bits (94), Expect = 0.001
Identities = 50/187 (26%), Positives = 68/187 (36%), Gaps = 42/187 (22%)
Query: 56 AGGAAGERQVGLQKIEAEWWSPWPICLPHPQG--PRPPSSSPRW----------PWGLGD 103
AG A R GL + W+ P P+G PR P SP G+G
Sbjct: 15 AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74
Query: 104 RLLGARA-------------------SRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
+ GA+ R G ++PPP G V+ PR+ G G
Sbjct: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVN-------PRVAGVDGLDR 127
Query: 145 QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
G +P G + ++L L +L GA R RR L G+ L L + G P
Sbjct: 128 GGRLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
Query: 205 LRLRCRL 211
+ R RL
Sbjct: 184 GQHRARL 190
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 40.8 bits (94), Expect = 0.001
Identities = 50/187 (26%), Positives = 68/187 (36%), Gaps = 42/187 (22%)
Query: 56 AGGAAGERQVGLQKIEAEWWSPWPICLPHPQG--PRPPSSSPRW----------PWGLGD 103
AG A R GL + W+ P P+G PR P SP G+G
Sbjct: 15 AGSAGQRRAPGLPRSSGPAWAESRARPPRPRGLEPRHPPGSPALRPTDRTCSSSSAGVGG 74
Query: 104 RLLGARA-------------------SRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKA 144
+ GA+ R G ++PPP G V+ PR+ G G
Sbjct: 75 GVGGAQPGSVPLGQHLALERGRTLGHGRVGRRDPPPLGLLVN-------PRVAGVDGLDR 127
Query: 145 QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
G +P G + ++L L +L GA R RR L G+ L L + G P
Sbjct: 128 GGRLDPAG----IGQVLGLGVLGGAGRQRRALGGQALGLLAQVGIGAGHARGGRGAVGPA 183
Query: 205 LRLRCRL 211
+ R RL
Sbjct: 184 GQHRARL 190
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.4 bits (93), Expect = 0.002
Identities = 63/233 (27%), Positives = 80/233 (34%), Gaps = 35/233 (15%)
Query: 41 QLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
+L PG + G G AG GL + ++P P +P QGP+ P P
Sbjct: 826 ELGLPGLKGDRGEKGEAGPAGPP--GLPGTTS-LFTPHPR-MPGEQGPKGEKGDPGLP-- 879
Query: 101 LGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GKAQGPGNPEGPSSLLP 158
G+ L R GPQ P P + A P G G G PG P GP
Sbjct: 880 -GEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPG-PSGPPG--- 934
Query: 159 RLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG-LRLRCRLDLPGL- 216
+ GLR P + + G + + G SPG + R PGL
Sbjct: 935 ----------------SVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLP 978
Query: 217 GLRDLGARSSSVLSSSPSELVPELSVLLLANSEEGSE---IWGKCWSLGRPAP 266
G G L SP L L GSE + G+C R AP
Sbjct: 979 GPPGKGKDGEPGLRGSPG-LPGPLGTKAACGKVRGSENCALGGQCVKGDRGAP 1030
Score = 36.6 bits (83), Expect = 0.024
Identities = 51/192 (26%), Positives = 59/192 (30%), Gaps = 54/192 (28%)
Query: 33 PGLSFGGPQL-STPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
PG S G P L TPG+D E G A G G P P GPR
Sbjct: 933 PG-SVGAPGLRGTPGKDGERGEKGAAGEEGS--------------------PGPVGPRGD 971
Query: 92 SSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKA--------------GNR---- 133
+P P G G R P P P G+ + K G+R
Sbjct: 972 PGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPG 1031
Query: 134 -PRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEG 192
P G+ G G P GP SG D+ GL P G
Sbjct: 1032 IPGSPGSRGDPGIGVAGPPGP-------------SGPPGDKGSPGSRGLPGFPGPQGPAG 1078
Query: 193 RRASPGNLASPG 204
R +PGN G
Sbjct: 1079 RDGAPGNPGERG 1090
Score = 35.0 bits (79), Expect = 0.069
Identities = 39/150 (26%), Positives = 54/150 (36%), Gaps = 27/150 (18%)
Query: 8 DICQSSPIIPDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGL 67
D+C P P G +PGL PG+ G + G AG +
Sbjct: 1112 DVCNDCPPGPPG------------LPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGL-- 1157
Query: 68 QKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR-LLGARASRSGPQEPPPPGSTVS 126
P P + PQG + + GD+ G P P PPG+
Sbjct: 1158 ---------PGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGI 1208
Query: 127 RRKAGNRPRLRGTAGGKAQGPGNPEGPSSL 156
AG P ++G+ G +GP P+GPS L
Sbjct: 1209 AGAAGP-PGIQGSPG--KEGPPGPQGPSGL 1235
Score = 32.0 bits (71), Expect = 0.58
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 35 LSFGGPQLSTPGQDREAGADTAGGAAGER----QVGLQKI-EAEWWSPWPICLPHPQGPR 89
+ GP + PG + GA GA G + VG+ + E + LP P G
Sbjct: 486 MGVAGP-MGLPGPKGDIGAIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGRD 544
Query: 90 PPSSSPRWPWGLGDRLLGARASRSGPQEPP----PPGSTVSRRKAGNRPRLRGTAGGKAQ 145
P LG+ L GPQ PP PPG + G R +GT G K +
Sbjct: 545 GSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGE-KGTRGEKGE 603
Query: 146 G-----PGNP 150
PG P
Sbjct: 604 RGLDGFPGKP 613
Score = 28.5 bits (62), Expect = 6.5
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 33 PGLSFGGPQLSTPGQDREAGADTAGGAAGERQV----GLQKIEAEWWSPWPICLPHPQGP 88
PGL ++ PG E G G GER + G + P P + PQG
Sbjct: 574 PGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGE 633
Query: 89 R---PPSSSPRWPWGL-------GDRLLGARASRSGPQEPPPPGS--TVSRRKAGNRPRL 136
+ P+ P P + G++ GA R P PPG+ + P L
Sbjct: 634 KGDVGPAGPPGVPGSVVQQEGLKGEQ--GAPGPRGHQGAPGPPGARGPIGPEGRDGPPGL 691
Query: 137 RGTAGGKAQGPGNPEGPSSLL 157
+G G K G P G LL
Sbjct: 692 QGLRGKK--GDMGPPGIPGLL 710
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)
Query: 38 GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
GGP G+ + G G G R +Q +W P P C
Sbjct: 425 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 484
Query: 82 ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
P P+G P PP R G G G R R G + PG + G+R
Sbjct: 485 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 540
Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
RG GG+ GPG P GP
Sbjct: 541 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 568
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)
Query: 38 GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
GGP G+ + G G G R +Q +W P P C
Sbjct: 480 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 539
Query: 82 ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
P P+G P PP R G G G R R G + PG + G+R
Sbjct: 540 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 595
Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
RG GG+ GPG P GP
Sbjct: 596 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 623
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)
Query: 38 GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
GGP G+ + G G G R +Q +W P P C
Sbjct: 486 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 545
Query: 82 ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
P P+G P PP R G G G R R G + PG + G+R
Sbjct: 546 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 601
Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
RG GG+ GPG P GP
Sbjct: 602 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 629
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 36/148 (24%)
Query: 38 GGPQLSTPGQDREAGADTAGGAAGERQV-----GLQKIEAEWWSPWPIC----------- 81
GGP G+ + G G G R +Q +W P P C
Sbjct: 481 GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTEC 540
Query: 82 ----LPHPQG----PRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNR 133
P P+G P PP R G G G R R G + PG + G+R
Sbjct: 541 NQCKAPKPEGFLPPPFPPPGGDRGRGGPG----GMRGGRGGLMDRGGPGGMFRGGRGGDR 596
Query: 134 PRLRGT--------AGGKAQGPGNPEGP 153
RG GG+ GPG P GP
Sbjct: 597 GGFRGGRGMDRGGFGGGRRGGPGGPPGP 624
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.9 bits (89), Expect = 0.005
Identities = 50/176 (28%), Positives = 60/176 (34%), Gaps = 18/176 (10%)
Query: 38 GGPQL-STPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPR 96
GGP + PG G+D G G + E P P P P GPR
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGS--------QGESGRPGP---PGPSGPRGQPGVMG 579
Query: 97 WPWGLG-DRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSS 155
+P G D G R GP P P G + G + T G +G P GP
Sbjct: 580 FPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639
Query: 156 L--LPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRD---EGRRASPGNLASPGLR 206
L LP +G + G AP D G R PG +PGLR
Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Score = 37.7 bits (86), Expect = 0.011
Identities = 53/189 (28%), Positives = 63/189 (33%), Gaps = 33/189 (17%)
Query: 20 GLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWP 79
GL GA PGL G G AG GAAG GLQ + E
Sbjct: 687 GLAGA--------PGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP--GLQGMPGERGG--- 733
Query: 80 ICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGT 139
L P GP+ P P G +GP PP P + G P L G
Sbjct: 734 --LGSP-GPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGI 790
Query: 140 AGGKA----QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRA 195
AG + +G P GP+ GA G+G R AP ++G
Sbjct: 791 AGPRGSPGERGETGPPGPAG----------FPGAPGQNGEPGGKGERGAP---GEKGEGG 837
Query: 196 SPGNLASPG 204
PG PG
Sbjct: 838 PPGVAGPPG 846
Score = 36.6 bits (83), Expect = 0.024
Identities = 49/184 (26%), Positives = 61/184 (33%), Gaps = 37/184 (20%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSS---PRWPWGL 101
PG G D G GE G ++ E P P P GPR P P
Sbjct: 260 PGMKGHRGFDGRNGEKGE--TGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAA 317
Query: 102 GDRLL-GARASRSGPQEPPPPGSTVSRRKAGNR--------------PRLRGTAGGK--- 143
G R GAR S P P PPG+ G + P RG G +
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA 377
Query: 144 -AQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLAS 202
AQGP P G ++G+ + + G+ AP G G +
Sbjct: 378 GAQGPPGPPG-------------INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGA 424
Query: 203 PGLR 206
PGLR
Sbjct: 425 PGLR 428
Score = 36.6 bits (83), Expect = 0.024
Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 27/181 (14%)
Query: 32 VPGLSFGGPQLSTPGQDREAGADTAGGAAGER-------QVGLQKIEAEWWSPWPICLPH 84
+PG+ + G E GA+ GAAGER G I E P
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPG 513
Query: 85 PQGPRPPSSSP---RWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG 141
P GPR + P P G G R G S GP PG S+ ++G RP G +G
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGMR--GMPGSPGGPGSDGKPGPPGSQGESG-RPGPPGPSG 570
Query: 142 GKAQ----GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASP 197
+ Q G P+G G +R G G + P ++ + G + P
Sbjct: 571 PRGQPGVMGFPGPKGNDG----------APGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620
Query: 198 G 198
G
Sbjct: 621 G 621
Score = 33.9 bits (76), Expect = 0.15
Identities = 48/202 (23%), Positives = 65/202 (32%), Gaps = 31/202 (15%)
Query: 33 PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWS---------------P 77
PG+ PGQ G+ G G Q ++ S P
Sbjct: 114 PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP 173
Query: 78 WPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPP-PPGSTVSRRKAG----- 131
P P P GP S P P G + ++GP PP PPG+ AG
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233
Query: 132 NRPRLRGTAGGKAQGPGNPEGPSSL--LPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSR 189
RP G G GP +GP+ + P + G ++ GL+
Sbjct: 234 GRPGRPGERG--LPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPG 291
Query: 190 DEGR------RASPGNLASPGL 205
+ G R +PG PGL
Sbjct: 292 ENGAPGPMGPRGAPGERGRPGL 313
Score = 32.7 bits (73), Expect = 0.34
Identities = 47/172 (27%), Positives = 58/172 (33%), Gaps = 30/172 (17%)
Query: 39 GPQLSTPGQDREAGADTAGGAAGER----QVGLQKIEAEWWSPWPICLPHPQGPRPPSSS 94
GPQ G E+G A G +GER GL + P P G S
Sbjct: 972 GPQ----GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS 1027
Query: 95 PRWPWGLGDR-LLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEG- 152
P G GDR G+ + P P PPG K+G+R A GP G
Sbjct: 1028 PG---GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA 1084
Query: 153 PSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPG 204
P PR G + G++ G R PGN +PG
Sbjct: 1085 PGPQGPR--------GDKGETGERGAAGIK---------GHRGFPGNPGAPG 1119
Score = 30.4 bits (67), Expect = 1.7
Identities = 42/161 (26%), Positives = 52/161 (32%), Gaps = 42/161 (26%)
Query: 46 GQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR- 104
G+ AG A G AG R P PQGPR G+R
Sbjct: 1065 GESGPAGPAGAPGPAGSRGA-----------------PGPQGPRGDKGET------GERG 1101
Query: 105 LLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLL 164
G + R P P PGS AG + + +GP P GP
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSP---GPAGQQGAIGSPGPAGPRGPVGPSGPPG--------- 1149
Query: 165 LLSGATRDRRRLWGEGLRLAPRRSRDE-GRRASPGNLASPG 204
G + + G PR +R E G SPG+ PG
Sbjct: 1150 -KDGTSGHPGPIGPPG----PRGNRGERGSEGSPGHPGQPG 1185
Score = 30.0 bits (66), Expect = 2.2
Identities = 46/181 (25%), Positives = 53/181 (29%), Gaps = 41/181 (22%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
PG E GA G AG R G E P P P G P G G+R
Sbjct: 776 PGDKGEGGAPGLPGIAGPR--GSPGERGETGPPGPAGFPGAPGQNGE------PGGKGER 827
Query: 105 LLGARASR--------------SGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK------- 143
GA + SGP PP P R + P G G +
Sbjct: 828 --GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG 885
Query: 144 AQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASP 203
+ G P GPS G G +P S +G PG SP
Sbjct: 886 SNGNPGPPGPSG----------SPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSP 935
Query: 204 G 204
G
Sbjct: 936 G 936
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.5 bits (88), Expect = 0.006
Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 83 PHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPP-------PPGSTVSRRKAGNRPR 135
P PQGP P+ P G + R GP P PPG + + G P
Sbjct: 1107 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIG-EPG 1165
Query: 136 LRGTAGGKA-QGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRR 194
+G+ G K QGP P GP + + P SGA + +GL + DEG R
Sbjct: 1166 QKGSKGDKGEQGPPGPTGPQGPIGQPGP----SGADGEPGPRGQQGLF---GQKGDEGPR 1218
Query: 195 ASPGNLASPGLR 206
PG GL+
Sbjct: 1219 GFPGPPGPVGLQ 1230
Score = 37.0 bits (84), Expect = 0.018
Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 12/142 (8%)
Query: 17 PDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWS 76
P G G L V +PG + GP + PG+D + G G Q G + + E
Sbjct: 1127 PQGPAGRDGLQGPVGLPGPA--GP-VGPPGEDGDKGEIGEPG-----QKGSKGDKGEQGP 1178
Query: 77 PWPICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRL 136
P P P G PS + P G + L + GP+ P P V + P
Sbjct: 1179 PGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGE 1238
Query: 137 RGTAGGKAQ----GPGNPEGPS 154
+G G Q GP P GPS
Sbjct: 1239 KGETGDVGQMGPPGPPGPRGPS 1260
Score = 32.7 bits (73), Expect = 0.34
Identities = 51/176 (28%), Positives = 61/176 (34%), Gaps = 27/176 (15%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
PG +G D G GER + P P P+GP P P G R
Sbjct: 930 PGPKGNSGGDGPAGPPGERGPNGPQ--------GPTGFPGPKGPPGPPGKDGLPGHPGQR 981
Query: 105 LLGARASRSGPQEPP----PPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
++GP PP P G T G R P +G G GK G+P
Sbjct: 982 GETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDP 1041
Query: 151 EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
GP+ L + P L G DR G A +EG PG SPG R
Sbjct: 1042 -GPAGLPGKDGP-PGLRGFPGDRGLPGPVG---ALGLKGNEGPPGPPGPAGSPGER 1092
Score = 32.7 bits (73), Expect = 0.34
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 83 PHPQGPRPPSSSPRW------PWGLGD-RLLGARASRSGPQEPPPPGSTVSRRKAGNRPR 135
P P GPR PS +P P G+G+ +G + EP PG G R
Sbjct: 1251 PGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGE 1310
Query: 136 LRGTAGGKAQGPGNPEGP 153
+ A GP P+GP
Sbjct: 1311 KGESGPSGAAGPPGPKGP 1328
Score = 28.1 bits (61), Expect = 8.4
Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 31 EVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPW--PICLPHPQGP 88
E+P + S P GAD G E + + ++ ++ P+ P P GP
Sbjct: 375 EIPTSTADTSNSSNPAPPPGEGADDLEGEFTEETI--RNLDENYYDPYYDPTSSPSEIGP 432
Query: 89 RPPSSSPRWPWGLGDRLLGARASRSGPQEPP--PPGSTVSRRKAGNRPRLRGTAGGKAQG 146
P++ G+G G R + EP PG + +G
Sbjct: 433 GMPANQDTIYEGIG----GPRGEKGQKGEPAIIEPGMLI-------------------EG 469
Query: 147 PGNPEGPSSL 156
P PEGP+ L
Sbjct: 470 PPGPEGPAGL 479
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.5 bits (88), Expect = 0.006
Identities = 50/181 (27%), Positives = 66/181 (36%), Gaps = 13/181 (7%)
Query: 33 PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPS 92
PG + + PG D G+ G G G ++ P P P +GPR P
Sbjct: 1289 PGSATAKGERGFPGADGRPGSPGRAGNPGTP--GAPGLKGSPGLPGPRGDPGERGPRGPK 1346
Query: 93 SSPRWPW----GLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTA--GGKA-Q 145
P P G G L G R GP PP P + P L GTA G K +
Sbjct: 1347 GEPGAPGQVIGGEGPGLPG-RKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDR 1405
Query: 146 GPGNPEGP--SSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASP 203
G P GP + P L L G+ + + G + + ++G PG SP
Sbjct: 1406 GERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPG-KKGEKGDSEDGAPGLPGQPGSP 1464
Query: 204 G 204
G
Sbjct: 1465 G 1465
Score = 37.7 bits (86), Expect = 0.011
Identities = 55/189 (29%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 33 PGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSP------WPICLPHPQ 86
PGL+ + PG+D G GA+G G + E +P P LP P
Sbjct: 1838 PGLNGKNGEPGDPGEDGRKGEKGDSGASGRE--GRDGPKGERGAPGILGPQGPPGLPGPV 1895
Query: 87 GPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRP---RLRGTAGGK 143
GP P P P G G + G R E PG R + G+ P RL TAG K
Sbjct: 1896 GP-PGQGFPGVPGGTGPK--GDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIK 1952
Query: 144 AQGPGN-----PEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPG 198
A E S LP G + ++ EG P +G R PG
Sbjct: 1953 ASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPG 2012
Query: 199 NLASPGLRL 207
PGL L
Sbjct: 2013 PQGPPGLAL 2021
Score = 33.9 bits (76), Expect = 0.15
Identities = 37/127 (29%), Positives = 43/127 (33%), Gaps = 20/127 (15%)
Query: 86 QGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG--GK 143
+GPR P P P G+R + GPQ P + P L G +G GK
Sbjct: 1727 EGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGK 1786
Query: 144 --AQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLR---LAPRRSRDEGRRASPG 198
A GP P G +G D R GLR P S G PG
Sbjct: 1787 PGAAGPSGPNG-------------AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPG 1833
Query: 199 NLASPGL 205
PGL
Sbjct: 1834 EDGKPGL 1840
Score = 33.5 bits (75), Expect = 0.20
Identities = 54/207 (26%), Positives = 71/207 (34%), Gaps = 47/207 (22%)
Query: 28 VTVEVPGLSFGGPQ--LSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHP 85
V+V+ PG G Q G E G++ G G+R G+ I+ + P
Sbjct: 2094 VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDR--GVPGIKGDRGEP-------- 2143
Query: 86 QGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAG---- 141
GPR +P P G + GP+ PP P P L G AG
Sbjct: 2144 -GPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGP 2202
Query: 142 -------GKAQGPGN-------------PEGPSSLLPRLLPLLLLSGATRDRRRLWGEGL 181
G+ PG P GPS L+ G+ ++ G
Sbjct: 2203 SGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGP-------QGSPGLPGQVGETGK 2255
Query: 182 RLAPRR---SRDEGRRASPGNLASPGL 205
AP R S +G R SPG SPGL
Sbjct: 2256 PGAPGRDGASGKDGDRGSPGVPGSPGL 2282
Score = 33.1 bits (74), Expect = 0.26
Identities = 42/137 (30%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 77 PWPICLPHPQGPRPPSSSPRWPWGL-GDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR 135
P P+ P Q P R G GD L R GPQ PPGS ++ + G P
Sbjct: 1246 PCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQ--GPPGSATAKGERG-FPG 1302
Query: 136 LRGTAG--GKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGE----GLRLAPRRSR 189
G G G+A PG P P LP R R GE G +
Sbjct: 1303 ADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPG 1362
Query: 190 DEGRRASPGNLASPGLR 206
GR+ PG PG R
Sbjct: 1363 LPGRKGDPGPSGPPGPR 1379
Score = 31.6 bits (70), Expect = 0.76
Identities = 48/183 (26%), Positives = 61/183 (33%), Gaps = 36/183 (19%)
Query: 41 QLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWG 100
Q +PG+ G A G G+R P P+ +G R P P
Sbjct: 1460 QPGSPGEQGPRGPPGAIGPKGDRGF-----------PGPLGEAGEKGERGP------PGP 1502
Query: 101 LGDRLLGARASR---SGPQEPPPPGSTVSRRKAGNR--------PRLRGTAGGKAQ-GPG 148
G R L A R GP+ PP P + R P + G G K GP
Sbjct: 1503 AGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPA 1562
Query: 149 NPEGPSSLL-PRLLPLLLL------SGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
P G + + R P L+L G DR + G P S G + PG
Sbjct: 1563 GPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPG 1622
Query: 202 SPG 204
PG
Sbjct: 1623 PPG 1625
Score = 31.6 bits (70), Expect = 0.76
Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 29/101 (28%)
Query: 107 GARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQ-GPGNPEGPSSLLPRLLPLLL 165
G + R P P PPG V G R +G G + Q GP P+G
Sbjct: 1691 GPKGDRGEPGPPGPPGRLVD---TGPGAREKGEPGDRGQEGPRGPKGDP----------- 1736
Query: 166 LSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
GL AP EG R PG PG+R
Sbjct: 1737 --------------GLPGAPGERGIEGFRGPPGPQGDPGVR 1763
Score = 29.6 bits (65), Expect = 2.9
Identities = 49/187 (26%), Positives = 62/187 (33%), Gaps = 48/187 (25%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPR--------------- 89
PG+D + GA G G+ VG+ SP P P P G +
Sbjct: 2353 PGEDGQKGAPGPKGFKGDPGVGVP------GSPGP---PGPPGVKGDLGLPGLPGAPGVV 2403
Query: 90 --PPSSSPRWPWG----LGDRLLGARASRS---GPQEPP-PPGSTVSRRKAGNRPRLRGT 139
P + PR G G+R L R GP PP PPGS +G L+G
Sbjct: 2404 GFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASG----LKGD 2459
Query: 140 AGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGN 199
G G P G G + R EG R G R G+
Sbjct: 2460 KGDPGVGLPGPRGERG----------EPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGD 2509
Query: 200 LASPGLR 206
+ S GL+
Sbjct: 2510 VGSAGLK 2516
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 38.1 bits (87), Expect = 0.008
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 47 QDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDRLL 106
++ E A T G A +Q + + WS P P +++P WP G+ R
Sbjct: 473 EEAEVAAPTKGPAPAPQQCSEPETK---WSSIPASKPRRGTAPTRTAAPPWPGGVSVRTG 529
Query: 107 GARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLL- 165
+ S + P PG +G ++ +PEGP + ++L ++
Sbjct: 530 PEKRSSTRPPAEMEPG--------------KGEQASSSES--DPEGP--IAAQMLSFVMD 571
Query: 166 ----LSGATRDRRRLWGEGLRLAPRRSRDEGRRAS----PGNLASPGLRLRCRLDLPGLG 217
S + +RR +R P DE + P L P RL+ DL GLG
Sbjct: 572 DPDFESEGSDTQRRADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAFRLKNDSDLFGLG 631
Query: 218 LRDLGARSSS 227
L + G + SS
Sbjct: 632 LEEAGPKESS 641
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.7 bits (86), Expect = 0.011
Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 27/176 (15%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
PG +G D G GER G Q + P+ P P+GP P P G R
Sbjct: 912 PGPKGTSGGDGPPGPPGER--GPQGPQG------PVGFPGPKGPPGPPGKDGLPGHPGQR 963
Query: 105 LLGARASRSGPQEP----PPPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
++GP P P G T G R P +G G GK G+P
Sbjct: 964 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1023
Query: 151 EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
GP + + P L G +R +G AP EG + PG + SPG R
Sbjct: 1024 -GPQGISGKDGP-AGLRGFPGERGLPGAQG---APGLKGGEGPQGPPGPVGSPGER 1074
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 41 QLSTPGQDREAGADTAGGAAGERQVGLQKIE-AEWWSPWPICLPHPQGPRPPSSSPRWPW 99
Q+ G+D G G G+ Q E + P P QGP+ + P +P
Sbjct: 815 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 874
Query: 100 GLGDRLLGARASRSGPQ-EPPPPGSTVSRRKAG--NRPRLRGTAGGKA-------QGPGN 149
G++ A + GP+ + P G SR G +P +GT+GG +GP
Sbjct: 875 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQG 934
Query: 150 PEGP 153
P+GP
Sbjct: 935 PQGP 938
Score = 35.0 bits (79), Expect = 0.069
Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 34/181 (18%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP--RWPWGL- 101
PG+ AG D GG GE + + P P P P G P P R P G
Sbjct: 1332 PGEPGPAGQDGVGGDKGE--------DGDPGQPGP---PGPSGEAGPPGPPGKRGPPGAA 1380
Query: 102 -GDRLLGARASRSGPQEPPPPGST--VSRRKAGNRP---RLRGTAG--------GKA--Q 145
+ G + ++ PPG T V + +P LRG G G A
Sbjct: 1381 GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD 1440
Query: 146 GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGL 205
GP P GP P L L G+ ++ GL P ++G R PG SPG
Sbjct: 1441 GPPGPMGP----PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1496
Query: 206 R 206
+
Sbjct: 1497 K 1497
Score = 33.5 bits (75), Expect = 0.20
Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 33 PGLSFG-GPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
PGL G GPQ PG G + G AG +GL P PQGP P
Sbjct: 1053 PGLKGGEGPQ-GPPGPVGSPGERGSAGTAGP--IGLPG------------RPGPQGPPGP 1097
Query: 92 SSSPRWPWGLGDRLLGARASRSGPQE-PPPPGSTVSRRKAGNR-----PRLRGTAGGKAQ 145
+ P G + R GP P P G S + G++ P +G+ G K
Sbjct: 1098 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDK-- 1155
Query: 146 GPGNPEGPSSLLPRLLPLLLLSG----ATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
G P GP L + + G R ++ ++G+ DEG R PG
Sbjct: 1156 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ--------KGDEGARGFPGPPG 1207
Query: 202 SPGLR 206
GL+
Sbjct: 1208 PIGLQ 1212
Score = 32.3 bits (72), Expect = 0.45
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 45 PGQDREAGADTAGGAAGER-QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGD 103
PGQ AG D G G G + +P P LP PQGP P
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP------------ 722
Query: 104 RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK-AQGPGNPEGP 153
GPQ P P G +G K A GP P+GP
Sbjct: 723 ------PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGP 767
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.7 bits (86), Expect = 0.011
Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 27/176 (15%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
PG +G D G GER G Q + P+ P P+GP P P G R
Sbjct: 861 PGPKGTSGGDGPPGPPGER--GPQGPQG------PVGFPGPKGPPGPPGKDGLPGHPGQR 912
Query: 105 LLGARASRSGPQEP----PPPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
++GP P P G T G R P +G G GK G+P
Sbjct: 913 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 972
Query: 151 EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
GP + + P L G +R +G AP EG + PG + SPG R
Sbjct: 973 -GPQGISGKDGP-AGLRGFPGERGLPGAQG---APGLKGGEGPQGPPGPVGSPGER 1023
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 41 QLSTPGQDREAGADTAGGAAGERQVGLQKIE-AEWWSPWPICLPHPQGPRPPSSSPRWPW 99
Q+ G+D G G G+ Q E + P P QGP+ + P +P
Sbjct: 764 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 823
Query: 100 GLGDRLLGARASRSGPQ-EPPPPGSTVSRRKAG--NRPRLRGTAGGKA-------QGPGN 149
G++ A + GP+ + P G SR G +P +GT+GG +GP
Sbjct: 824 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQG 883
Query: 150 PEGP 153
P+GP
Sbjct: 884 PQGP 887
Score = 35.0 bits (79), Expect = 0.069
Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 34/181 (18%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP--RWPWGL- 101
PG+ AG D GG GE + + P P P P G P P R P G
Sbjct: 1281 PGEPGPAGQDGVGGDKGE--------DGDPGQPGP---PGPSGEAGPPGPPGKRGPPGAA 1329
Query: 102 -GDRLLGARASRSGPQEPPPPGST--VSRRKAGNRP---RLRGTAG--------GKA--Q 145
+ G + ++ PPG T V + +P LRG G G A
Sbjct: 1330 GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD 1389
Query: 146 GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGL 205
GP P GP P L L G+ ++ GL P ++G R PG SPG
Sbjct: 1390 GPPGPMGP----PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1445
Query: 206 R 206
+
Sbjct: 1446 K 1446
Score = 33.5 bits (75), Expect = 0.20
Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 33 PGLSFG-GPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
PGL G GPQ PG G + G AG +GL P PQGP P
Sbjct: 1002 PGLKGGEGPQ-GPPGPVGSPGERGSAGTAGP--IGLPG------------RPGPQGPPGP 1046
Query: 92 SSSPRWPWGLGDRLLGARASRSGPQE-PPPPGSTVSRRKAGNR-----PRLRGTAGGKAQ 145
+ P G + R GP P P G S + G++ P +G+ G K
Sbjct: 1047 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDK-- 1104
Query: 146 GPGNPEGPSSLLPRLLPLLLLSG----ATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
G P GP L + + G R ++ ++G+ DEG R PG
Sbjct: 1105 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ--------KGDEGARGFPGPPG 1156
Query: 202 SPGLR 206
GL+
Sbjct: 1157 PIGLQ 1161
Score = 32.3 bits (72), Expect = 0.45
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 45 PGQDREAGADTAGGAAGER-QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGD 103
PGQ AG D G G G + +P P LP PQGP P
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP------------ 671
Query: 104 RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK-AQGPGNPEGP 153
GPQ P P G +G K A GP P+GP
Sbjct: 672 ------PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGP 716
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.7 bits (86), Expect = 0.011
Identities = 51/176 (28%), Positives = 65/176 (36%), Gaps = 27/176 (15%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGDR 104
PG +G D G GER G Q + P+ P P+GP P P G R
Sbjct: 900 PGPKGTSGGDGPPGPPGER--GPQGPQG------PVGFPGPKGPPGPPGKDGLPGHPGQR 951
Query: 105 LLGARASRSGPQEP----PPPGSTVSRRKAGNR--------PRLRGTAG--GKAQGPGNP 150
++GP P P G T G R P +G G GK G+P
Sbjct: 952 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1011
Query: 151 EGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLR 206
GP + + P L G +R +G AP EG + PG + SPG R
Sbjct: 1012 -GPQGISGKDGP-AGLRGFPGERGLPGAQG---APGLKGGEGPQGPPGPVGSPGER 1062
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 41 QLSTPGQDREAGADTAGGAAGERQVGLQKIE-AEWWSPWPICLPHPQGPRPPSSSPRWPW 99
Q+ G+D G G G+ Q E + P P QGP+ + P +P
Sbjct: 803 QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPG 862
Query: 100 GLGDRLLGARASRSGPQ-EPPPPGSTVSRRKAG--NRPRLRGTAGGKA-------QGPGN 149
G++ A + GP+ + P G SR G +P +GT+GG +GP
Sbjct: 863 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQG 922
Query: 150 PEGP 153
P+GP
Sbjct: 923 PQGP 926
Score = 35.0 bits (79), Expect = 0.069
Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 34/181 (18%)
Query: 45 PGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP--RWPWGL- 101
PG+ AG D GG GE + + P P P P G P P R P G
Sbjct: 1320 PGEPGPAGQDGVGGDKGE--------DGDPGQPGP---PGPSGEAGPPGPPGKRGPPGAA 1368
Query: 102 -GDRLLGARASRSGPQEPPPPGST--VSRRKAGNRP---RLRGTAG--------GKA--Q 145
+ G + ++ PPG T V + +P LRG G G A
Sbjct: 1369 GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD 1428
Query: 146 GPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGL 205
GP P GP P L L G+ ++ GL P ++G R PG SPG
Sbjct: 1429 GPPGPMGP----PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1484
Query: 206 R 206
+
Sbjct: 1485 K 1485
Score = 33.5 bits (75), Expect = 0.20
Identities = 51/185 (27%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 33 PGLSFG-GPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPP 91
PGL G GPQ PG G + G AG +GL P PQGP P
Sbjct: 1041 PGLKGGEGPQ-GPPGPVGSPGERGSAGTAGP--IGLPG------------RPGPQGPPGP 1085
Query: 92 SSSPRWPWGLGDRLLGARASRSGPQE-PPPPGSTVSRRKAGNR-----PRLRGTAGGKAQ 145
+ P G + R GP P P G S + G++ P +G+ G K
Sbjct: 1086 AGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDK-- 1143
Query: 146 GPGNPEGPSSLLPRLLPLLLLSG----ATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
G P GP L + + G R ++ ++G+ DEG R PG
Sbjct: 1144 GENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ--------KGDEGARGFPGPPG 1195
Query: 202 SPGLR 206
GL+
Sbjct: 1196 PIGLQ 1200
Score = 32.3 bits (72), Expect = 0.45
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 45 PGQDREAGADTAGGAAGER-QVGLQKIEAEWWSPWPICLPHPQGPRPPSSSPRWPWGLGD 103
PGQ AG D G G G + +P P LP PQGP P
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP------------ 710
Query: 104 RLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGK-AQGPGNPEGP 153
GPQ P P G +G K A GP P+GP
Sbjct: 711 ------PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGP 755
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 37.7 bits (86), Expect = 0.011
Identities = 37/128 (28%), Positives = 46/128 (35%), Gaps = 35/128 (27%)
Query: 36 SFGGPQLSTPGQD-REAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSS 94
S GP +T G R G + AGG G G RP S
Sbjct: 347 SKAGPSGATAGASGRATGPEAAGGGGAGGGGG--------------------GYRPIIQS 386
Query: 95 PRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRR----------KAGNRPRLRGTAGGKA 144
P + G G G A+ G PPPP ST + + A + G AGG+A
Sbjct: 387 PGYKTGKG----GYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQA 442
Query: 145 QGPGNPEG 152
PG P+G
Sbjct: 443 YSPGQPQG 450
Score = 34.3 bits (77), Expect = 0.12
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 118 PPPPGSTVSRRKAGNRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLW 177
PP PG RR+ G +P K GP P G PR+ PL + + A
Sbjct: 1144 PPNPGPDGPRRR-GRKP-----TKAKRDGPPRPRG----RPRIRPLEVPTTAGPASASTP 1193
Query: 178 GEGLRLAPRRSRDEGRRA--SPGNLASPGLRLRCRLDLPGLGLRDLGARSSSVLSSS 232
+G + R R GR+A + G P L+ +L +P G LG S +S +
Sbjct: 1194 TDGAKKPRGRGRGRGRKAEEAGGTRLEPLKPLKIKLSVPKAG-EGLGTSSGDAISGT 1249
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 37.4 bits (85), Expect = 0.014
Identities = 45/147 (30%), Positives = 50/147 (34%), Gaps = 25/147 (17%)
Query: 34 GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSS 93
G GGP +PG D A A G A +E P P P GPR +
Sbjct: 42 GAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLA 101
Query: 94 SPRWPWGLGDRLLG------------ARASRSGPQEPPP------PGSTVSRRKAGN--- 132
SP P G G R GP P GS+ S R G
Sbjct: 102 SPDAP-GPGPRSEAPLPELDPLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDV 160
Query: 133 -RPRLRGTAGGKA--QGPGNPEGPSSL 156
P TAG A QGPG+P PS L
Sbjct: 161 FSPFPAPTAGELALEQGPGSPPQPSDL 187
Score = 33.1 bits (74), Expect = 0.26
Identities = 41/133 (30%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 40 PQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQGPRPPSSSP---- 95
P S PG + GG G L AE P+ P PQ P +P
Sbjct: 5 PPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAA 64
Query: 96 ----RWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG-NP 150
RW G L G GP PPP ++G R +L A A GPG
Sbjct: 65 DGGARWSAGPAPGLEGGPRD-PGPSAPPP--------RSGPRGQL---ASPDAPGPGPRS 112
Query: 151 EGPSSLLPRLLPL 163
E P LP L PL
Sbjct: 113 EAP---LPELDPL 122
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 37.4 bits (85), Expect = 0.014
Identities = 44/141 (31%), Positives = 51/141 (36%), Gaps = 24/141 (17%)
Query: 17 PDGGLGGALLIVTVEVPGLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWS 76
P L +V P +S G +PG GGA GE GL A
Sbjct: 23 PPAALAPVSGVVLPAPPAVSAGSSPAGSPG----------GGAGGE---GLGAAAAA--- 66
Query: 77 PWPICLPHPQGPRPPSSS-PRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPR 135
L HP P PP+++ P P A A SGP P PPG AG P
Sbjct: 67 ----LLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGP--PAPPGLAAGPGPAGGAPT 120
Query: 136 LRGTAGGKAQGPGNPEGPSSL 156
AG A P P G S+L
Sbjct: 121 PALVAGSSAAAP-FPHGDSAL 140
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 37.4 bits (85), Expect = 0.014
Identities = 42/140 (30%), Positives = 49/140 (35%), Gaps = 8/140 (5%)
Query: 77 PWPICLPHPQ-GPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPG----STVSRRKAG 131
P P PQ GP P + R P R + PP PG S SR +A
Sbjct: 201 PQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAA 260
Query: 132 NRPRLRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWG-EGLRLAPRRSRD 190
RP G KA P P G P L + +R R+ WG G R D
Sbjct: 261 GRPGPGFHGGEKAAAPRAPGGGGGRNPGALG--RAAPPSRARQDAWGLSGCATVGLRRGD 318
Query: 191 EGRRASPGNLASPGLRLRCR 210
R S A+ G RCR
Sbjct: 319 CDRAGSSQPPATSGNGERCR 338
Score = 35.8 bits (81), Expect = 0.040
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 90 PPSSSPRWPWGL-GDRLLGAR---ASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQ 145
PPS + + WGL G +G R R+G +PP R + R R RG GG+ +
Sbjct: 295 PPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRG-GGGEGE 353
Query: 146 GPGNPEGPSSLLPR-----LLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEG 192
G GP+S R + +L +G+ RR GL+L P R G
Sbjct: 354 GTHATHGPASPPGRRHDEEVGAAVLRAGSGEGSRR----GLQLTPPPRRVHG 401
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 37.4 bits (85), Expect = 0.014
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 12/179 (6%)
Query: 83 PHPQGPRPPSSSPRWPWGLGDRLLGARASRSG-PQEPPPPGSTVSRRKAGNRPRLRGTAG 141
P PQ + PSS + P G R + + G +PP T +R + ++P RG+A
Sbjct: 3754 PGPQQSQSPSSR-QIPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAP 3812
Query: 142 GKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLA 201
+Q G P+ S P +G R + +G AP++ R + +PG
Sbjct: 3813 AASQPAGKPQPGPSTATGPQP----AGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGP-G 3867
Query: 202 SPGLRLRCRL-DLPGLGLRDLGARSSSVLS----SSPSELVPELSVLLLANSEEGSEIW 255
G++ R PG GA SV S +E +L+ + A ++ S W
Sbjct: 3868 PAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGGAAEQAGKLTEAVSAFGKKFSSFW 3926
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 37.4 bits (85), Expect = 0.014
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 79 PICLPHPQGPRPPSSSPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRG 138
P+ HP P P + P G + R P PPPP + SR P RG
Sbjct: 7 PLKPTHPAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGPLPPPPPPRG 66
Query: 139 ----TAGGKAQG---PGNPEGPSSLL 157
AGG A G PG GPS+ L
Sbjct: 67 LGPPVAGGAAAGAGMPGGGGGPSAAL 92
>gi|94818738 C1q and tumor necrosis factor related protein 2 [Homo
sapiens]
Length = 330
Score = 37.4 bits (85), Expect = 0.014
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 76 SPWPIC-LPHPQGPRPPSSSPRWPWGLGDRLL--------GARASRSGPQEPPPPGSTVS 126
SP +C LP PQGP P +P P G+ R+ G R E PPG T +
Sbjct: 76 SPQLVCSLPGPQGPPGPPGAPG-PSGMMGRMGFPGKDGQDGHDGDRGDSGEEGPPGRTGN 134
Query: 127 RRKAGNRPRLRGTAGGKAQGPGNPEG 152
R K G P+ + A G+A GP P+G
Sbjct: 135 RGKPG--PKGKAGAIGRA-GPRGPKG 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,904,372
Number of Sequences: 37866
Number of extensions: 976484
Number of successful extensions: 5121
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 590
Number of HSP's that attempted gapping in prelim test: 4298
Number of HSP's gapped (non-prelim): 1243
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.