Guide to the Human Genome
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Name: LOC100293036 Sequence: fasta or formatted (196aa) NCBI GI: 239757559
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         32           2
 C cysteine            2.6          5           1
 D aspartate           1.0          2           1
 E glutamate           3.1          6           1
 F phenylalanine       2.0          4           1
 G glycine             7.1         14           3
 H histidine           1.0          2           1
 I isoleucine          1.5          3           1
 K lysine              1.0          2           1
 L leucine             7.7         15           2
 M methionine          2.6          5           1
 N asparagine          1.0          2           1
 P proline            16.8         33           3
 Q glutamine           3.1          6           1
 R arginine           10.7         21           2
 S serine             12.8         25           2
 T threonine           4.6          9           1
 V valine              3.1          6           1
 W tryptophan          2.0          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289065          0.879   PREDICTED: hypothetical protein 
LOC100289065          0.879   PREDICTED: hypothetical protein XP_002343789 
SAMD1                 0.090   sterile alpha motif domain containing 1 
CIC                   0.069   capicua homolog 
FLJ22184              0.063   PREDICTED: hypothetical protein FLJ22184 
MAP7D1                0.063   MAP7 domain containing 1 
LOC440829             0.058   PREDICTED: transmembrane protein 46-like 
HCN4                  0.053   hyperpolarization activated cyclic nucleotide-gated p...
WASL                  0.053   Wiskott-Aldrich syndrome gene-like protein 
GLTSCR1               0.053   glioma tumor suppressor candidate region gene 1 [Ho...
NACA                  0.053   nascent polypeptide-associated complex alpha subuni...
MDC1                  0.053   mediator of DNA-damage checkpoint 1 
LOC100289949          0.053   PREDICTED: hypothetical protein XP_002346877 
LOC100290372          0.050   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.050   PREDICTED: hypothetical protein XP_002342652 
IER5L                 0.050   immediate early response 5-like 
WNK2                  0.050   WNK lysine deficient protein kinase 2 
UBE4B                 0.050   ubiquitination factor E4B isoform 1 
LOC100131102          0.047   PREDICTED: hypothetical protein 
LOC100293375          0.047   PREDICTED: hypothetical protein 
MUC7                  0.045   mucin 7, secreted precursor 
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.045   PREDICTED: hypothetical protein LOC80164 
MUC7                  0.045   mucin 7, secreted precursor 
MUC7                  0.045   mucin 7, secreted precursor 
LOC100133756          0.045   PREDICTED: hypothetical protein, partial 
AEBP1                 0.042   adipocyte enhancer binding protein 1 precursor [Homo...
LOC100291634          0.042   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.042   PREDICTED: hypothetical protein XP_002346952 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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