Guide to the Human Genome
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Name: LOC100289065 Sequence: fasta or formatted (216aa) NCBI GI: 239752069
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {216aa} PREDICTED: hypothetical protein XP_002343789
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         33           2
 C cysteine            3.2          7           1
 D aspartate           0.9          2           1
 E glutamate           4.2          9           1
 F phenylalanine       2.3          5           1
 G glycine             8.8         19           3
 H histidine           0.9          2           1
 I isoleucine          1.9          4           1
 K lysine              0.9          2           1
 L leucine             7.4         16           2
 M methionine          2.3          5           1
 N asparagine          1.4          3           1
 P proline            13.4         29           2
 Q glutamine           2.8          6           1
 R arginine           12.5         27           2
 S serine             12.5         27           2
 T threonine           4.6         10           1
 V valine              3.2          7           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289065          1.000   PREDICTED: hypothetical protein XP_002343789 
LOC100293036          0.802   PREDICTED: hypothetical protein 
SAMD1                 0.065   sterile alpha motif domain containing 1 
PSRC1                 0.053   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.053   proline/serine-rich coiled-coil 1 isoform a 
TAF4                  0.046   TBP-associated factor 4 
DIDO1                 0.046   death inducer-obliterator 1 isoform c 
DIDO1                 0.046   death inducer-obliterator 1 isoform b 
WNK2                  0.046   WNK lysine deficient protein kinase 2 
NACA                  0.046   nascent polypeptide-associated complex alpha subuni...
MDC1                  0.043   mediator of DNA-damage checkpoint 1 
LOC100130360          0.043   PREDICTED: hypothetical protein 
LOC100131225          0.043   PREDICTED: hypothetical protein 
LOC100131225          0.043   PREDICTED: hypothetical protein 
LOC100131225          0.043   PREDICTED: hypothetical protein 
LOC100131225          0.043   PREDICTED: hypothetical protein 
LOC100293375          0.041   PREDICTED: hypothetical protein 
MAP7D1                0.041   MAP7 domain containing 1 
CIC                   0.041   capicua homolog 
LOC643355             0.041   PREDICTED: hypothetical protein 
LOC100289949          0.041   PREDICTED: hypothetical protein XP_002346877 
HCN4                  0.039   hyperpolarization activated cyclic nucleotide-gated p...
LOC100131102          0.039   PREDICTED: hypothetical protein 
IER5L                 0.039   immediate early response 5-like 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.036   PREDICTED: hypothetical protein LOC80164 
LOC388279             0.036   PREDICTED: hypothetical protein 
LOC728650             0.036   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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