Guide to the Human Genome
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Name: LOC100293727 Sequence: fasta or formatted (435aa) NCBI GI: 239757530
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         42           2
 C cysteine            1.6          7           1
 D aspartate          12.0         52           1
 E glutamate           2.5         11           1
 F phenylalanine       0.9          4           1
 G glycine             5.3         23           1
 H histidine           2.3         10           1
 I isoleucine          4.8         21           1
 K lysine              4.4         19           2
 L leucine             4.1         18           2
 M methionine          4.1         18           1
 N asparagine          0.9          4           1
 P proline             6.2         27           1
 Q glutamine          10.3         45           1
 R arginine            3.0         13           1
 S serine             10.6         46           2
 T threonine           9.9         43           1
 V valine              6.2         27           2
 W tryptophan          0.7          3           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287547          1.000   PREDICTED: hypothetical protein 
LOC100287547          0.826   PREDICTED: hypothetical protein XP_002343755 
LOC100292293          0.059   PREDICTED: similar to apopolysialoglycoprotein [Hom...
LOC100128719          0.044   PREDICTED: hypothetical protein, partial 
LOC100128719          0.044   PREDICTED: hypothetical protein, partial 
ACRC                  0.032   ACRC protein 
LOC100134147          0.031   PREDICTED: hypothetical protein 
MUC2                  0.030   mucin 2 precursor 
DSPP                  0.027   dentin sialophosphoprotein preproprotein 
TCERG1                0.021   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.021   transcription elongation regulator 1 isoform 1 [Homo...
LOC645971             0.018   PREDICTED: similar to hCG2036794 
LOC645971             0.018   PREDICTED: similar to hCG2036794 
LOC645971             0.018   PREDICTED: similar to hCG2036794 
PRG4                  0.017   proteoglycan 4 isoform D 
PRG4                  0.017   proteoglycan 4 isoform C 
PRG4                  0.017   proteoglycan 4 isoform B 
PRG4                  0.017   proteoglycan 4 isoform A 
GPR152                0.017   G protein-coupled receptor 152 
BPTF                  0.014   bromodomain PHD finger transcription factor isoform ...
GPRIN1                0.014   G protein-regulated inducer of neurite outgrowth 1 ...
LOC100290483          0.014   PREDICTED: hypothetical protein XP_002347000 
TMEM117               0.014   transmembrane protein 117 
BPTF                  0.013   bromodomain PHD finger transcription factor isoform ...
INPP5F                0.012   inositol polyphosphate-5-phosphatase F 
MYLK                  0.011   myosin light chain kinase isoform 3A 
MYLK                  0.011   myosin light chain kinase isoform 1 
MYLK                  0.011   myosin light chain kinase isoform 3B 
MYLK                  0.011   myosin light chain kinase isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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