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Search of human proteins with 239757177
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757177 PREDICTED: hypothetical protein [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757177 PREDICTED: hypothetical protein [Homo sapiens] 330 2e-91
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 37 0.005
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 34 0.045
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 34 0.045
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.29
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 31 0.38
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ... 31 0.38
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ... 31 0.38
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 31 0.50
gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo sap... 31 0.50
gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo sap... 31 0.50
gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo sapi... 31 0.50
gi|115298674 nidogen 1 precursor [Homo sapiens] 30 0.66
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens] 30 0.86
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens] 30 0.86
gi|42741652 RPA-binding trans-activator [Homo sapiens] 30 0.86
gi|15718684 RPA-binding trans-activator [Homo sapiens] 30 0.86
gi|239752306 PREDICTED: hypothetical protein XP_002348194 [Homo ... 30 1.1
gi|239746817 PREDICTED: hypothetical protein XP_002343856 [Homo ... 30 1.1
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 30 1.1
gi|11967969 ATP-binding cassette sub-family G member 5 [Homo sap... 29 1.5
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 29 1.5
gi|27436971 potassium voltage-gated channel, shaker-related subf... 29 1.5
gi|14149724 mesoderm posterior 1 [Homo sapiens] 29 1.9
gi|28875797 small protein rich in arginine and glycine [Homo sap... 28 2.5
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 28 2.5
gi|130502162 RAS protein activator like 3 [Homo sapiens] 28 2.5
gi|156119599 transmembrane protein 215 [Homo sapiens] 28 2.5
gi|39812378 RAN binding protein 9 [Homo sapiens] 28 3.3
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 28 3.3
>gi|239757177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 330 bits (847), Expect = 2e-91
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MGTSSGRSLNLAAVYKPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLER 60
MGTSSGRSLNLAAVYKPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLER
Sbjct: 1 MGTSSGRSLNLAAVYKPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLER 60
Query: 61 GRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDGWEVWSLQDSWMGNPTWLCF 120
GRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDGWEVWSLQDSWMGNPTWLCF
Sbjct: 61 GRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDGWEVWSLQDSWMGNPTWLCF 120
Query: 121 LLTRGPAIAENNSPETARLRGEKNLAPFQALTENLSEP 158
LLTRGPAIAENNSPETARLRGEKNLAPFQALTENLSEP
Sbjct: 121 LLTRGPAIAENNSPETARLRGEKNLAPFQALTENLSEP 158
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 37.4 bits (85), Expect = 0.005
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 26 CGGLGLALTARGVTLRDPPGA-PGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLT 84
CG GLA G LR G+ P + L + L RGRCR LS+ P P +
Sbjct: 834 CGLRGLASPPPGGALRPRRGSHPKAELDDAGSSLLRGRCRSLSDVRVRGP----VPQHVV 889
Query: 85 EGEIGSSLREGCRTLDGWEVWSLQDSW 111
E G++ +LD + SL+ SW
Sbjct: 890 EAPDGAAAAASGSSLDSFSRGSLKISW 916
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 34.3 bits (77), Expect = 0.045
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 19 GGSGRGHCGGLGLALTARGVTLR 41
GG+G G CGG G ALT R VTLR
Sbjct: 56 GGAGAGGCGGPGGALTRRAVTLR 78
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 34.3 bits (77), Expect = 0.045
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 19 GGSGRGHCGGLGLALTARGVTLR 41
GG+G G CGG G ALT R VTLR
Sbjct: 56 GGAGAGGCGGPGGALTRRAVTLR 78
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.6 bits (70), Expect = 0.29
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 41 RDPPGAPGSRLREHPGDL-ERGRC----RGLSETLRGAPGLAVSPDPLTEGEIGSSLREG 95
R PPG PG+ ++ GD ERG G++ G PGL SP P +G +G ++G
Sbjct: 1388 RGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGP--QGPVGPPGKKG 1445
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.38
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 GSGRGHCGGLGLALTARGVTLRDPPGAPGSRL 51
G GH G + ARG LR+PPGAPG R+
Sbjct: 7 GLKSGHLERQGAKVAARG-GLREPPGAPGGRI 37
>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.38
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 GSGRGHCGGLGLALTARGVTLRDPPGAPGSRL 51
G GH G + ARG LR+PPGAPG R+
Sbjct: 7 GLKSGHLERQGAKVAARG-GLREPPGAPGGRI 37
>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 0.38
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 GSGRGHCGGLGLALTARGVTLRDPPGAPGSRL 51
G GH G + ARG LR+PPGAPG R+
Sbjct: 7 GLKSGHLERQGAKVAARG-GLREPPGAPGGRI 37
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 30.8 bits (68), Expect = 0.50
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1 MGTSSGR-SLNLAAVYKPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLE 59
MG +G ++N+A P G G G GG G AL+A GV +R P P + HP L
Sbjct: 94 MGPLTGSYNVNMALAGGPGPGGGGGSSGGAG-ALSAAGV-IRVPAHRPLAGAVAHPQPLA 151
Query: 60 RG 61
G
Sbjct: 152 TG 153
>gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 0.50
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 42 DPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDG 101
D P +P ++ GD+ + + + L P +V P EG+I S E + +G
Sbjct: 171 DIPKSPEETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPKEGDISKSPEEAIQPKEG 230
Query: 102 WEVWSLQDS 110
SL+++
Sbjct: 231 DLPKSLEEA 239
>gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo
sapiens]
Length = 553
Score = 30.8 bits (68), Expect = 0.50
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 42 DPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDG 101
D P +P ++ GD+ + + + L P +V P EG+I S E + +G
Sbjct: 238 DIPKSPEETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPKEGDISKSPEEAIQPKEG 297
Query: 102 WEVWSLQDS 110
SL+++
Sbjct: 298 DLPKSLEEA 306
>gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 0.50
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 42 DPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDG 101
D P +P ++ GD+ + + + L P +V P EG+I S E + +G
Sbjct: 171 DIPKSPEETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPKEGDISKSPEEAIQPKEG 230
Query: 102 WEVWSLQDS 110
SL+++
Sbjct: 231 DLPKSLEEA 239
>gi|115298674 nidogen 1 precursor [Homo sapiens]
Length = 1247
Score = 30.4 bits (67), Expect = 0.66
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 34 TARGVTLRDPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEG 86
T T + PG G R PG++E+ RC+ E + GA G P+ G
Sbjct: 820 TPGSFTCQCKPGYQGDGFRCVPGEVEKTRCQHEREHILGAAGATDPQRPIPPG 872
>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 0.86
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 1 MGTSSGRSLNLAAVYKPAG-GSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLE 59
+G ++ L A+ P G +GRG G GL L+ T+R G G R G
Sbjct: 91 LGLTTTPGLGPRALCGPRGWAAGRGEAGATGLRLSVGAATVR---GWAGGYFRGDGG--- 144
Query: 60 RGRCRGLSETLRGAPG---LAVSPDPLTEGEI 88
RG+SE++ G L +SP P E+
Sbjct: 145 ----RGVSESVAVGTGPDFLLLSPPPPPPAEV 172
>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 0.86
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 1 MGTSSGRSLNLAAVYKPAG-GSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLE 59
+G ++ L A+ P G +GRG G GL L+ T+R G G R G
Sbjct: 91 LGLTTTPGLGPRALCGPRGWAAGRGEAGATGLRLSVGAATVR---GWAGGYFRGDGG--- 144
Query: 60 RGRCRGLSETLRGAPG---LAVSPDPLTEGEI 88
RG+SE++ G L +SP P E+
Sbjct: 145 ----RGVSESVAVGTGPDFLLLSPPPPPPAEV 172
>gi|42741652 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 0.86
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 44 PGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGE--------IGSSLREG 95
P AP LR H L + L LR AP A+ P+PL GE IGS LRE
Sbjct: 47 PRAPS--LRRHV--LIHNTLQQLQAALRLAPAPALPPEPLFLGEEDFSLSATIGSILREL 102
Query: 96 CRTLDGWE 103
++DG E
Sbjct: 103 DTSMDGTE 110
>gi|15718684 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 0.86
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 44 PGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGE--------IGSSLREG 95
P AP LR H L + L LR AP A+ P+PL GE IGS LRE
Sbjct: 47 PRAPS--LRRHV--LIHNTLQQLQAALRLAPAPALPPEPLFLGEEDFSLSATIGSILREL 102
Query: 96 CRTLDGWE 103
++DG E
Sbjct: 103 DTSMDGTE 110
>gi|239752306 PREDICTED: hypothetical protein XP_002348194 [Homo
sapiens]
Length = 160
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 74 PGLAVSPDPLTE-GEIGSSLREGCRTLDGWEVWSLQDSW 111
PG+ P P + G GSS G R GWE+ L+ +W
Sbjct: 41 PGVRSGPGPPSRLGLSGSSRSRGFRPFCGWEISGLEAAW 79
>gi|239746817 PREDICTED: hypothetical protein XP_002343856 [Homo
sapiens]
Length = 160
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 74 PGLAVSPDPLTE-GEIGSSLREGCRTLDGWEVWSLQDSW 111
PG+ P P + G GSS G R GWE+ L+ +W
Sbjct: 41 PGVRSGPGPPSRLGLSGSSRSRGFRPFCGWEISGLEAAW 79
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 16 KPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLRE--HPGDLERGRCR 64
+PAGG+G G CG G L AR + G LRE P D R + R
Sbjct: 1079 RPAGGNGSGLCG--GGVLGARSIYCSSQRSGRGRGLREFARPEDCPRAKPR 1127
>gi|11967969 ATP-binding cassette sub-family G member 5 [Homo
sapiens]
Length = 651
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 64 RGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDGWEVWSLQDSW 111
RG +L GAP A +P+P + G + +S R W++ S + W
Sbjct: 19 RGSQSSLEGAP--ATAPEPHSLGILHASYSVSHRVRPWWDITSCRQQW 64
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 45 GAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDG 101
G P +E G G ++ G PG + P P +G +G+ EG G
Sbjct: 197 GDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAG 253
>gi|27436971 potassium voltage-gated channel, shaker-related
subfamily, beta member 3 [Homo sapiens]
Length = 404
Score = 29.3 bits (64), Expect = 1.5
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 17 PAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGL 76
PAGG GG G AR + PP AP LRE GR G+ G GL
Sbjct: 35 PAGGGHGNPPGGGGSGPKARAALVPRPP-APAGALRE-----STGRGTGMKYRNLGKSGL 88
Query: 77 AVS 79
VS
Sbjct: 89 RVS 91
>gi|14149724 mesoderm posterior 1 [Homo sapiens]
Length = 268
Score = 28.9 bits (63), Expect = 1.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 22 GRGHCGGLGLALTAR-GVTLRDPPGAPGSRLREHPGD 57
G+G GLGL R G + PP PG+R P D
Sbjct: 182 GQGQGRGLGLVSAVRAGASWGSPPACPGARAAPEPRD 218
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 28.5 bits (62), Expect = 2.5
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 6 GRSLNLAAVYKPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLERGRCRG 65
G+S A + +P G RG GG GL + RG+ G +R G RG+
Sbjct: 80 GKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQ--- 136
Query: 66 LSETLRGAPGLAVSP 80
LRG G AV+P
Sbjct: 137 --NLLRG--GRAVAP 147
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 28.5 bits (62), Expect = 2.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 18 AGGSGRGHCGG-LGLALTARGVTLRDPPGAPGSRLREHPGDLERG 61
A SGR G LG + + GV D P A R+R PG +ERG
Sbjct: 58 AADSGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIR--PGGVERG 100
>gi|130502162 RAS protein activator like 3 [Homo sapiens]
Length = 1011
Score = 28.5 bits (62), Expect = 2.5
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 41 RDPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLD 100
RDP PG E G + RGL + L+ + P +GS RE TL
Sbjct: 179 RDPDRMPGKTEPETAGPNQVHNVRGLLKRLKEKKKARLEPRDGPPSALGS--RESLATLS 236
Query: 101 GWE--------VWSLQDSWMGNPTWLCFLLT 123
+ +W L S +G P CF +T
Sbjct: 237 ELDLGAERDVRIWPLHPSLLGEPH--CFQVT 265
>gi|156119599 transmembrane protein 215 [Homo sapiens]
Length = 235
Score = 28.5 bits (62), Expect = 2.5
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 41 RDPPGAPGSRLREHPGDLERGRCRGLSETLRGAPGLAVSPDPLTEGE--IGSSLREGCRT 98
R P L P DLE G+ G S+ L GL P P ++GE + SS+ T
Sbjct: 84 RKPKDKEVVELLRTPSDLESGK--GSSDELAKKAGLRGKPPPQSQGEVSVASSINSPTPT 141
Query: 99 LDG 101
+G
Sbjct: 142 EEG 144
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 28.1 bits (61), Expect = 3.3
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 11 LAAVYKPAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLREHPGDLERGRCRGLSETL 70
++A PAG G G GG GL A + L PP P + P +
Sbjct: 41 VSAGSSPAGSPGGG-AGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPA 99
Query: 71 RG---APGLAVSPDP 82
G PGLA P P
Sbjct: 100 SGPPAPPGLAAGPGP 114
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 28.1 bits (61), Expect = 3.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 44 PGAPGSR-LREHPGDLERGRCRGLSETLRGAPGL-------AVSPDPLTEGEIGSSLREG 95
PG+PG+R + GD RC E ++G PGL ++ +P +G+ G + G
Sbjct: 465 PGSPGARGPKGWKGDAGECRCTEGDEAIKGLPGLPGPKGFAGINGEPGRKGDRGDPGQHG 524
Score = 26.6 bits (57), Expect = 9.5
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 17 PAGGSGRGHCGGLGLALTARGVTLRDPPGAPGSRLRE---------HPGDL--ERGR--- 62
P G G G G+ V P G P L HP E+G
Sbjct: 224 PKGQQGNRGLGFYGVKGEKGDVGQPGPNGIPSDTLHPIIAPTGVTFHPDQYKGEKGSEGE 283
Query: 63 --CRGLS----ETLRGAPGLAVSPDPLTEGEIGSSLREGCRTLDGWE 103
RG+S E + G PGL P GE GS ++G R LDG++
Sbjct: 284 PGIRGISLKGEEGIMGFPGLRGYPG--LSGEKGSPGQKGSRGLDGYQ 328
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,970,845
Number of Sequences: 37866
Number of extensions: 437614
Number of successful extensions: 1012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 76
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.