Guide to the Human Genome
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Name: SERTAD3 Sequence: fasta or formatted (196aa) NCBI GI: 42741652
Description:

RPA-binding trans-activator

Not currently referenced in the text

Other entries for this name:
alt mRNA {196aa} RPA-binding trans-activator
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         14           2
 C cysteine            0.5          1           1
 D aspartate           6.1         12           2
 E glutamate           9.7         19           5
 F phenylalanine       3.1          6           2
 G glycine             6.1         12           2
 H histidine           2.6          5           1
 I isoleucine          4.1          8           2
 K lysine              2.0          4           1
 L leucine            14.8         29           2
 M methionine          1.5          3           1
 N asparagine          2.6          5           1
 P proline            11.2         22           2
 Q glutamine           5.1         10           2
 R arginine            5.6         11           2
 S serine              8.2         16           2
 T threonine           3.1          6           1
 V valine              3.6          7           1
 W tryptophan          2.0          4           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RPA-binding trans-activator 
SERTAD3               1.000   RPA-binding trans-activator 
SERTAD1               0.125   SERTA domain containing 1 
CEP68                 0.029   centrosomal protein 68kDa 
C1orf38               0.021   basement membrane-induced gene isoform 3 
CDCA4                 0.021   cell division cycle associated 4 
CDCA4                 0.021   cell division cycle associated 4 
HDAC5                 0.019   histone deacetylase 5 isoform 3 
HDAC5                 0.019   histone deacetylase 5 isoform 1 
WNK2                  0.019   WNK lysine deficient protein kinase 2 
COLQ                  0.019   acetylcholinesterase collagen-like tail subunit isof...
COLQ                  0.019   acetylcholinesterase collagen-like tail subunit isof...
ROBO2                 0.019   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.019   roundabout, axon guidance receptor, homolog 2 isofor...
SERTAD2               0.019   SERTA domain containing 2 
LOC100131908          0.016   PREDICTED: similar to forkhead box O6 
FOXO6                 0.016   PREDICTED: forkhead box protein O6 
FOXO6                 0.016   PREDICTED: forkhead box protein O6 
ATF5                  0.016   activating transcription factor 5 
KIAA1984              0.016   hypothetical protein LOC84960 
MAP3K14               0.013   mitogen-activated protein kinase kinase kinase 14 [...
PRR14                 0.013   proline rich 14 
ENAH                  0.013   enabled homolog isoform a 
ENAH                  0.013   enabled homolog isoform b 
LOC100133949          0.013   PREDICTED: hypothetical protein 
BAT2                  0.013   HLA-B associated transcript-2 
DAG1                  0.013   dystroglycan 1 preproprotein 
SCRIB                 0.013   scribble isoform b 
SCRIB                 0.013   scribble isoform a 
EVL                   0.013   Enah/Vasp-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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