Guide to the Human Genome
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Search of human proteins with 239756935

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
sapiens]
         (237 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ...   518   e-147
gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ...   518   e-147
gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ...   516   e-147
gi|153281158 dual specificity phosphatase 8 [Homo sapiens]             42   4e-04
gi|71274172 ankyrin repeat domain 56 [Homo sapiens]                    41   0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    40   0.002
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   39   0.005
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]       39   0.005
gi|188497689 chromatin licensing and DNA replication factor 1 [H...    38   0.009
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      37   0.011
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        37   0.011
gi|117956393 glycine/arginine rich protein 1 [Homo sapiens]            37   0.019
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    36   0.025
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    36   0.025
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    36   0.025
gi|55741655 anoctamin 8 [Homo sapiens]                                 36   0.033
gi|55956910 meningioma  1 [Homo sapiens]                               36   0.033
gi|23397642 GREB1 protein isoform a [Homo sapiens]                     36   0.033
gi|224994251 myotubularin related protein 11 isoform a [Homo sap...    36   0.033
gi|89111941 myotubularin related protein 11 isoform b [Homo sapi...    36   0.033
gi|154759255 collagen, type XXVIII precursor [Homo sapiens]            36   0.033
gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]               35   0.043
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ...    35   0.043
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ...    35   0.043
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    35   0.043
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    35   0.043
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    35   0.043
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    35   0.043
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    35   0.043
gi|98986321 gliomedin [Homo sapiens]                                   35   0.043

>gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
           sapiens]
          Length = 237

 Score =  518 bits (1334), Expect = e-147
 Identities = 237/237 (100%), Positives = 237/237 (100%)

Query: 1   MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
           MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ
Sbjct: 1   MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60

Query: 61  RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
           RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP
Sbjct: 61  RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120

Query: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
           SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT
Sbjct: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180

Query: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
           CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP
Sbjct: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237


>gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo
           sapiens]
          Length = 237

 Score =  518 bits (1334), Expect = e-147
 Identities = 237/237 (100%), Positives = 237/237 (100%)

Query: 1   MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
           MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ
Sbjct: 1   MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60

Query: 61  RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
           RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP
Sbjct: 61  RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120

Query: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
           SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT
Sbjct: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180

Query: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
           CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP
Sbjct: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237


>gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo
           sapiens]
          Length = 237

 Score =  516 bits (1330), Expect = e-147
 Identities = 236/237 (99%), Positives = 236/237 (99%)

Query: 1   MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60
           MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ
Sbjct: 1   MHSGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQ 60

Query: 61  RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
           RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP
Sbjct: 61  RRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120

Query: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180
           SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT
Sbjct: 121 SALVTPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADAT 180

Query: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAPRP 237
           CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPAR LGSAFHGAPRP
Sbjct: 181 CPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARALGSAFHGAPRP 237


>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
          Length = 625

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 50/156 (32%), Positives = 57/156 (36%), Gaps = 18/156 (11%)

Query: 6   CILVAPAAAWTLGTSSPEPGSPSIQGPDRP---QNPRPEAGKDGARRSPGPT---RQGQG 59
           C L +P+ A  LG SSP P SP      RP   + PRP AG     RSP  +     G  
Sbjct: 423 CKLDSPSGA-ALGLSSPSPDSPDAAPEARPRPRRRPRPPAGSPA--RSPAHSLGLNFGDA 479

Query: 60  QRRLPVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGC 119
            R+ P      G       GLP   QP  PG W     S     P    W      A G 
Sbjct: 480 ARQTP----RHGLSALSAPGLPGPGQPAGPGAWAPPLDSPGTPSPDG-PWCFSPEGAQGA 534

Query: 120 PSALVTPQAPA-VPSPGYVPAPSFCHPHQWAASEPR 154
              L  P   A  P PG     S     + A +EPR
Sbjct: 535 GGVLFAPFGRAGAPGPG---GGSDLRRREAARAEPR 567


>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
          Length = 793

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 56/223 (25%), Positives = 79/223 (35%), Gaps = 44/223 (19%)

Query: 25  GSPSIQGPDRPQNPRPEAG------KDGARRSPGPTRQGQGQRRL------PVGASFQGW 72
           G   +Q P  P    P AG        GARR   P +Q + +RR       P GA+ +  
Sbjct: 82  GEEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAA 141

Query: 73  RGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVP 132
               NG LP S+    PG+                        + G P     P  PA  
Sbjct: 142 DAACNG-LPGSDSRRAPGKGG---------------------GSKGSPGQ--RPPVPAAA 177

Query: 133 SPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADSSSPSKAD 192
           + G   A + C     A ++ R  W     C ++ L      +GA          P++A 
Sbjct: 178 AAG-AQARASCAA---AKTQGRCCWE----CLQNNLAVLPGELGALPHSATAEEKPARAL 229

Query: 193 PALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHGAP 235
           PA  +RG S      A   P P  ++AH  PA V  +    +P
Sbjct: 230 PAQDDRGASREREEGALAEPAPVPAVAHSPPATVEAATSRASP 272


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 71/243 (29%), Positives = 88/243 (36%), Gaps = 54/243 (22%)

Query: 3   SGSCILVAPAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRR 62
           +GSC  V  AAA   G   PEP      GP +P  P   A + G    PGP   G G   
Sbjct: 134 AGSCAPVPAAAAVAAG---PEPAPA---GPAKPAGPAALAARAGPGPGPGP---GPGPGP 184

Query: 63  LPVGASFQGWRGRQNG--GLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCP 120
            P   +  G     NG   L  S     P        S   + P+A    LL L     P
Sbjct: 185 GPGKPAGPGAAQTLNGSAALLNSHHAAAPA------VSLVNNGPAA----LLPLPKPAAP 234

Query: 121 SALV---------TPQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTE 171
             ++          P APA PSP   PAP+       AA+ P P              T 
Sbjct: 235 GTVIQTPPFVGAAAPPAPAAPSPPAAPAPA-----APAAAPPPP---------PPAPATL 280

Query: 172 EQAVGADATCPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAF 231
            +  G  A  P  +++P+   PA  + G S      AAP+P PA       PA V G   
Sbjct: 281 ARPPGHPAGPP--TAAPAVPPPAAAQNGGS----AGAAPAPAPAAGG----PAGVSGQPG 330

Query: 232 HGA 234
            GA
Sbjct: 331 PGA 333


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLP 81
           PG P  +GP   +  + E GKDG +  PGP     G   LP     QG RG +  GLP
Sbjct: 186 PGMPGFKGPTGYKGEQGEVGKDGEKGDPGP----PGPAGLPGSVGLQGPRGLR--GLP 237



 Score = 29.3 bits (64), Expect = 3.1
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 14  AWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWR 73
           A  LG + P  G P + G       R EAG  G+  + GP    QG    P    FQG +
Sbjct: 354 AGELGEAGPS-GEPGVPGDAGMPGERGEAGHRGSAGALGP----QGPPGAPGVRGFQGQK 408

Query: 74  GRQ-NGGLP 81
           G   + GLP
Sbjct: 409 GSMGDPGLP 417



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNG 78
           PG   + G D P  P+   G+ G+   PGP   G G + LP      G  G   G
Sbjct: 82  PGVDGLTGRDGPPGPKGAPGERGSLGPPGP--PGLGGKGLPGPPGEAGVSGPPGG 134



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 25  GSPSIQGPDRPQNPRPEAGKDGARRSP---GPT--------RQGQGQR--RLPVGASFQG 71
           G P   GP  P  P    G  GAR  P   GPT        R  QG R  +   GA   G
Sbjct: 554 GRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDG 613

Query: 72  WRGRQNGGLPRSEQPYRPGRWREGWRSCSGD 102
             G Q    P+      PG  ++G     G+
Sbjct: 614 PEGDQGPQGPQGV----PGTSKDGQDGAPGE 640


>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
          Length = 1374

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 173 QAVGADATCPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFH 232
           +++  D  CP+ S SPS    +L E G  + DWG AA  P        PL    LGS+  
Sbjct: 597 RSLARDPLCPSRSPSPSAGPLSLAEGGAEDADWGVAAFCPA---FFEDPLGTSPLGSS-- 651

Query: 233 GAP 235
           GAP
Sbjct: 652 GAP 654



 Score = 28.5 bits (62), Expect = 5.3
 Identities = 39/140 (27%), Positives = 51/140 (36%), Gaps = 9/140 (6%)

Query: 90  GRWREGWRSCSGD---LPSAWNWFLLCLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPH 146
           G WR    + +      P +W+       A GCPS   TP+A   P PGY P        
Sbjct: 676 GHWRSNVSANNNSGSRCPESWDPVSAGGHAEGCPSPKQTPRAS--PEPGY-PGEPLLGLQ 732

Query: 147 QWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADSSSP-SKADPALGERGVSEVDW 205
             +A EP    G    C+   L      V    T  A S     +A+P L          
Sbjct: 733 AASAQEPGCCPGLPHLCSAQGLAPAPCLVTPSWTETASSGGDHPQAEPKLATEAEGTTGP 792

Query: 206 GEAAPS-PTPAHSMAHPLPA 224
               PS P+P+   A PLP+
Sbjct: 793 RLPLPSVPSPSQEGA-PLPS 811


>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
           sapiens]
          Length = 546

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 48/191 (25%), Positives = 68/191 (35%), Gaps = 25/191 (13%)

Query: 47  ARRSPGPTRQGQGQRRL----PVGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGD 102
           ARR PGP R    +       P   + +      +G   R+  P  PGR +         
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQAR------- 63

Query: 103 LPSAWNWFLLCLSACGCPSALVTPQAPAVPSPGY---VPAPSFCHPHQWAASEPRPFWGY 159
            P A     L +     PS    P  PA PSPG       P+   P    +++ +     
Sbjct: 64  -PPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISE 122

Query: 160 RGGCTRSM--LCTEEQAVGADATCPADSSSPSKADPALGERGVSEVDWGEAAPSPTPAHS 217
              C +    L    +A+ A A    +S +P          G  E   GE AP+    H+
Sbjct: 123 LASCLQRARELGARVRALKASAQDAGESCTPE-------AEGRPEEPCGEKAPAYQRFHA 175

Query: 218 MAHP-LPARVL 227
           +A P LP  VL
Sbjct: 176 LAQPGLPGLVL 186


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 10  APAAAWTLGTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPT--------RQGQGQR 61
           AP +    G    EPG   +QGP  P     E GK GAR  PGPT        R G G R
Sbjct: 438 APGSKGDTGAKG-EPGPVGVQGPPGPAG---EEGKRGARGEPGPTGLPGPPGERGGPGSR 493

Query: 62  RLPVGASFQGWRG 74
             P      G +G
Sbjct: 494 GFPGADGVAGPKG 506



 Score = 31.6 bits (70), Expect = 0.63
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 25  GSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG-QGQRRLPVGASFQG 71
           GSP  QG   P  P  EAGK G +  PG    P   G +G+R  P     QG
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQG 689



 Score = 31.2 bits (69), Expect = 0.82
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 10  APAAAWTLGTSSPE-----PGSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
           A  AA   G + P      PG+   +G   PQ PR   G  G R  PGP
Sbjct: 327 ATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP 375



 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 25  GSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
           GSP   GPD    P   AG+DG    PGP
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGRPGPPGP 570



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 28/88 (31%)

Query: 17  LGTSSPE--PGSPSIQGPDRPQNPRPEAGKDGA------RRSPGPTRQG----------- 57
           +G S P   PG P   GP   Q P  E G+ GA      R  PGP  +            
Sbjct: 181 MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240

Query: 58  ---------QGQRRLPVGASFQGWRGRQ 76
                    QG R LP  A   G +G +
Sbjct: 241 PGERGPPGPQGARGLPGTAGLPGMKGHR 268



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 24   PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLP 81
            PGSP  QGP     P    G  G+  +PG      G   LP      G RGR     P
Sbjct: 1123 PGSPGEQGPSGASGPAGPRGPPGSAGAPGK----DGLNGLPGPIGPPGPRGRTGDAGP 1176



 Score = 29.3 bits (64), Expect = 3.1
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPG-PTRQGQ-GQRRLPVGASFQGWRGRQNGGLP 81
           PG P  +GP  PQ P    G  G    PG P  +G  G +  P     QG  G      P
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG------P 462

Query: 82  RSEQPYRPGRWREG 95
             E+  R  R   G
Sbjct: 463 AGEEGKRGARGEPG 476



 Score = 28.5 bits (62), Expect = 5.3
 Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 10   APAAAWTLGTSSPE-----PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLP 64
            +P A    G + P      PG+P   GP  P      AGK G R   GP   G      P
Sbjct: 1029 SPGAKGDRGETGPAGPPGAPGAPGAPGPVGP------AGKSGDRGETGPA--GPAGPVGP 1080

Query: 65   VGASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSG 101
            VGA  +G  G Q     + E   +  R  +G R  SG
Sbjct: 1081 VGA--RGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPG-PTRQGQGQRRLPVGASFQGWRGRQN-GGLP 81
           PG     GP  P   +   G DG   +PG P  QG   +R  VG    G RG +   GLP
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVG--LPGQRGERGFPGLP 976

Query: 82  -RSEQPYRPG 90
             S +P + G
Sbjct: 977 GPSGEPGKQG 986



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 18  GTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTR-QG-QGQRRLPVGASFQGWRG- 74
           G      G  S+ GP  P  PR   G  GA   PGP   QG  G+   P  +   G RG 
Sbjct: 166 GYDEKSTGGISVPGPMGPSGPRGLPGPPGA---PGPQGFQGPPGEPGEPGASGPMGPRGP 222

Query: 75  ----RQNGGLPRSEQPYRPG 90
                +NG    + +P RPG
Sbjct: 223 PGPPGKNGDDGEAGKPGRPG 242



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 23  EPGSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
           EPGSP   G      PR   G+ G   +PGP
Sbjct: 288 EPGSPGENGAPGQMGPRGLPGERGRPGAPGP 318



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRG 74
           PG+  + GP  P   R   G  G + SPG   +  G+  LP      G  G
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR-PGEAGLPGAKGLTGSPG 545


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 43/132 (32%), Positives = 51/132 (38%), Gaps = 26/132 (19%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGR--QNG--- 78
           PG P IQG   P+ P    G+ GA+ SPG   +G      P GAS  G  GR  Q G   
Sbjct: 799 PGLPGIQGLPGPRGPPGPTGEKGAQGSPGV--KGATGPVGPPGASVSGPPGRDGQQGQTG 856

Query: 79  --GLPRSEQPYRPGRWREGWRSC--SGDL--------PSAWNWFLLCLSACGCPSALVTP 126
             G P  + P R  +   G  SC   GDL        P  W      + +   P     P
Sbjct: 857 LRGTPGEKGP-RGEKGEPGECSCPSQGDLIFSGMPGAPGLW------MGSSWQPGPQGPP 909

Query: 127 QAPAVPSPGYVP 138
             P  P P  VP
Sbjct: 910 GIPGPPGPPGVP 921



 Score = 30.8 bits (68), Expect = 1.1
 Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 24   PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQG-QGQRRLPVGASFQGWRGRQNGGLPR 82
            PGS  + GP  P  PR E G  G     G   QG QGQ   P      G+ G+     P 
Sbjct: 1122 PGSEGLPGPPGPAGPRGERGPQGNSGEKGD--QGFQGQPGFPGPPGPPGFPGKVGSPGPP 1179

Query: 83   SEQPYRPGRWREGWRSCSG 101
              Q  +     EG R  SG
Sbjct: 1180 GPQAEKGS---EGIRGPSG 1195



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 25   GSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
            GSP + GP      R E G  G R SPGP
Sbjct: 1018 GSPGLPGPPGLPGQRGEEGPPGMRGSPGP 1046



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 18   GTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPGP 53
            G+  P PG P IQGP        + GK G R  PGP
Sbjct: 1198 GSPGP-PGPPGIQGPAGLDGLDGKDGKPGLRGDPGP 1232



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 13/67 (19%)

Query: 23  EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQG----QGQRRLPVGASFQGWRGRQNG 78
           +PG P +QGP          G  G +  PGP  +G    QG+   P     QG  G +  
Sbjct: 763 QPGLPGVQGP---------PGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGP 813

Query: 79  GLPRSEQ 85
             P  E+
Sbjct: 814 PGPTGEK 820


>gi|117956393 glycine/arginine rich protein 1 [Homo sapiens]
          Length = 271

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 48/177 (27%), Positives = 59/177 (33%), Gaps = 53/177 (29%)

Query: 27  PSIQGPDRPQNPRP--EAGKDGARRSPGPTRQGQGQRRLP-------------------- 64
           P+++G   P  P P  E G   + R+P P R+G G RRLP                    
Sbjct: 41  PALRGSPGPLTPHPCNELGPPASPRTPRPVRRGSG-RRLPRPDSLIFYRQKRDCKASVNK 99

Query: 65  VGASFQGWRGRQNGGLPRSEQPYRPGRWRE-----GWRSCSGDLPSAWNWFLLC------ 113
             A  QG   R   G PR   P  P          GW +   D P A     LC      
Sbjct: 100 ENAKGQGLVRRLFLGAPRDAAPSSPASTERPAASGGW-AAPQDAPEAAGKRALCPTCSLP 158

Query: 114 -------LSACGCPSALV--------TPQ---APAVPSPGYVPAPSFCHPHQWAASE 152
                   + CG   ALV        +PQ   A A P  G  P P       W +S+
Sbjct: 159 LSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAGTSPPPGSGDASDWTSSD 215


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 36.2 bits (82), Expect = 0.025
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 19/80 (23%)

Query: 24  PGSPSIQGPDRP--------------QNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASF 69
           PG P + GP  P              Q P+ E G+ G +  PGP  Q   Q+R P+   F
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKR-PIDVEF 255

Query: 70  QGWRGRQNGGLPRSEQPYRP 89
           Q  +G Q  GLP    P  P
Sbjct: 256 Q--KGDQ--GLPGDRGPPGP 271



 Score = 35.4 bits (80), Expect = 0.043
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLPRS 83
           PG P   GP+ P  PR + G DG    PGP    +G R  P    F G  G    G+P  
Sbjct: 59  PGLPGFPGPEGPPGPRGQKGDDGIPGPPGP----KGIRGPPGLPGFPGTPGLP--GMPGH 112

Query: 84  EQPYRPGRWREGWRSCSG 101
           +    P    +G   C+G
Sbjct: 113 DGAPGP----QGIPGCNG 126



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 24/85 (28%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQ-GQRRLPVGASFQGWRGRQNG 78
           PG P I+GP  P  P  E G+ G +  PG    P + G+ GQ  +P              
Sbjct: 269 PGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP-------------- 312

Query: 79  GLPRSE-QPYRPGRWREGWRSCSGD 102
           GLP     P  PG  R+G +   GD
Sbjct: 313 GLPGDPGYPGEPG--RDGEKGQKGD 335



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 18   GTSSP--EPGSPSIQGP----DRPQNPRP--EAGKDGARRSPGPTRQ----GQGQRRLPV 65
            G S P   PG P   GP      P  P P  E GK G    PGP  Q    GQ     P 
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193

Query: 66   GASFQGWRGRQ-NGGLP 81
                 G  G++ +GGLP
Sbjct: 1194 PPGLPGLSGQKGDGGLP 1210



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 24   PGSP--SIQGPDR---PQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNG 78
            PGSP  +++GP     PQ P    G  G +  PGP    +G   LP     +G +G  N 
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGP----EGPPGLPGNGGIKGEKG--NP 1293

Query: 79   GLP 81
            G P
Sbjct: 1294 GQP 1296



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 24   PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQGQRRLPVGASFQ-GWRG 74
            PG P ++G   PQ P+   G  G    PG    P   G G R+   G   Q G RG
Sbjct: 1387 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1442


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 36.2 bits (82), Expect = 0.025
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 19/80 (23%)

Query: 24  PGSPSIQGPDRP--------------QNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASF 69
           PG P + GP  P              Q P+ E G+ G +  PGP  Q   Q+R P+   F
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKR-PIDVEF 255

Query: 70  QGWRGRQNGGLPRSEQPYRP 89
           Q  +G Q  GLP    P  P
Sbjct: 256 Q--KGDQ--GLPGDRGPPGP 271



 Score = 35.4 bits (80), Expect = 0.043
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLPRS 83
           PG P   GP+ P  PR + G DG    PGP    +G R  P    F G  G    G+P  
Sbjct: 59  PGLPGFPGPEGPPGPRGQKGDDGIPGPPGP----KGIRGPPGLPGFPGTPGLP--GMPGH 112

Query: 84  EQPYRPGRWREGWRSCSG 101
           +    P    +G   C+G
Sbjct: 113 DGAPGP----QGIPGCNG 126



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 24/85 (28%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQ-GQRRLPVGASFQGWRGRQNG 78
           PG P I+GP  P  P  E G+ G +  PG    P + G+ GQ  +P              
Sbjct: 269 PGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP-------------- 312

Query: 79  GLPRSE-QPYRPGRWREGWRSCSGD 102
           GLP     P  PG  R+G +   GD
Sbjct: 313 GLPGDPGYPGEPG--RDGEKGQKGD 335



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 18   GTSSP--EPGSPSIQGP----DRPQNPRP--EAGKDGARRSPGPTRQ----GQGQRRLPV 65
            G S P   PG P   GP      P  P P  E GK G    PGP  Q    GQ     P 
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193

Query: 66   GASFQGWRGRQ-NGGLP 81
                 G  G++ +GGLP
Sbjct: 1194 PPGLPGLSGQKGDGGLP 1210



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 24   PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQGQRRLPVGASFQ-GWRG 74
            PG P ++G   PQ P+   G  G    PG    P   G G R+   G   Q G RG
Sbjct: 1381 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1436


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 36.2 bits (82), Expect = 0.025
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 19/80 (23%)

Query: 24  PGSPSIQGPDRP--------------QNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASF 69
           PG P + GP  P              Q P+ E G+ G +  PGP  Q   Q+R P+   F
Sbjct: 197 PGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKR-PIDVEF 255

Query: 70  QGWRGRQNGGLPRSEQPYRP 89
           Q  +G Q  GLP    P  P
Sbjct: 256 Q--KGDQ--GLPGDRGPPGP 271



 Score = 35.4 bits (80), Expect = 0.043
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLPRS 83
           PG P   GP+ P  PR + G DG    PGP    +G R  P    F G  G    G+P  
Sbjct: 59  PGLPGFPGPEGPPGPRGQKGDDGIPGPPGP----KGIRGPPGLPGFPGTPGLP--GMPGH 112

Query: 84  EQPYRPGRWREGWRSCSG 101
           +    P    +G   C+G
Sbjct: 113 DGAPGP----QGIPGCNG 126



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 24   PGSP--SIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNGGLP 81
            PGSP  +++GP     P+   G+ G +  PGP    +G   LP     +G +G  N G P
Sbjct: 1240 PGSPGPALEGPKGNPGPQGPPGRPGFQGLPGP----EGPPGLPGNGGIKGEKG--NPGQP 1293



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 24/85 (28%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQ-GQRRLPVGASFQGWRGRQNG 78
           PG P I+GP  P  P  E G+ G +  PG    P + G+ GQ  +P              
Sbjct: 269 PGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP-------------- 312

Query: 79  GLPRSE-QPYRPGRWREGWRSCSGD 102
           GLP     P  PG  R+G +   GD
Sbjct: 313 GLPGDPGYPGEPG--RDGEKGQKGD 335



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 18   GTSSP--EPGSPSIQGP----DRPQNPRP--EAGKDGARRSPGPTRQ----GQGQRRLPV 65
            G S P   PG P   GP      P  P P  E GK G    PGP  Q    GQ     P 
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193

Query: 66   GASFQGWRGRQ-NGGLP 81
                 G  G++ +GGLP
Sbjct: 1194 PPGLPGLSGQKGDGGLP 1210



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 24   PGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQGQGQRRLPVGASFQ-GWRG 74
            PG P ++G   PQ P+   G  G    PG    P   G G R+   G   Q G RG
Sbjct: 1384 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG 1439


>gi|55741655 anoctamin 8 [Homo sapiens]
          Length = 1232

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 45/166 (27%), Positives = 58/166 (34%), Gaps = 33/166 (19%)

Query: 18   GTSSPEPGSPSIQGPDRPQNPRPEAGKDGARRS-------------PGPTRQGQGQRRLP 64
            G +  EPGS    G  RP    P +G    +RS             P P  +G G    P
Sbjct: 1058 GGTRAEPGSNGAGGQARPDGT-PSSGSSRVQRSGPVDEALAEELEAPRPEEEGSGTALAP 1116

Query: 65   VGA-SFQGWRGRQNGGLPRSEQPYRP----GRWR-EGWRSCSGDLPSAWNWFLLCLSACG 118
            VGA + +  R R     P    P  P    G W+ +G   C G+  +        L+A  
Sbjct: 1117 VGAPALRTRRSRSPAPPPPMPLPRPPTPPAGCWQWDGPWGCGGEGAAPRQ----ALAAAE 1172

Query: 119  C-PSALVTPQAPAVPSPGYV--------PAPSFCHPHQWAASEPRP 155
            C P A+  P     P PG          P P    P +  A  P P
Sbjct: 1173 CPPCAMAGPPPAPQPLPGDASFYSLPPPPLPPTSDPLETPAPSPSP 1218


>gi|55956910 meningioma  1 [Homo sapiens]
          Length = 1320

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 60/235 (25%), Positives = 85/235 (36%), Gaps = 40/235 (17%)

Query: 21   SPEPGSPS---IQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQN 77
            +P PG PS     G      P P A  DG   SP  T +         G    G  GR  
Sbjct: 887  APGPGGPSGTSSSGSKASGPPNPPAQGDGTSLSPNYTLESTSGND---GKPVSGGGGRGR 943

Query: 78   GGLPRSEQPYRPGRWREGWRSC--SGDLPS-AWNWFLLCLSACGCPSALVTPQAPAVPSP 134
            G   R      PG + + + +   SG  P  +        +A G  SA  T  AP     
Sbjct: 944  GRRKRDSGHVSPGTFFDKYSAAPDSGGAPGVSPGQQQASGAAVGGSSAGETRGAPT---- 999

Query: 135  GYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGA-DATCPADSSSPSKADP 193
                      PH+ A + P   WG +G     +L  +   +G+ D    +DSSSP+  + 
Sbjct: 1000 ----------PHEKALTSPS--WG-KG--AELLLGDQPDLIGSLDGGAKSDSSSPNVGEF 1044

Query: 194  ALGERGVSEVDWGEAAPSP-----------TPAHSMAHPLPARVLGSAFHGAPRP 237
            A  E   S  +  E + S            +P  + +  LP R +G+  HG   P
Sbjct: 1045 ASDEVSTSYANEDEVSSSSDNPQALVKASRSPLVTGSPKLPPRGVGAGEHGPKAP 1099


>gi|23397642 GREB1 protein isoform a [Homo sapiens]
          Length = 1949

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 24/141 (17%)

Query: 21   SPEPGSPSIQG--PDRPQNPRPEAGKDGA--RRSPGPTRQGQ-----GQRRLPVGASFQG 71
            SP+P  P+ +G  P   Q PR   G   A  R SPGPT Q       GQR + V  +   
Sbjct: 1160 SPQPRGPAEEGRAPGEKQRPRASQGPPSAISRHSPGPTPQPDCSLRTGQRSVQVSVTSSC 1219

Query: 72   WRGRQNGGLPRSEQPYRPGRWREGWRSCSGD----------LPSAWNWFLLCLSACGCPS 121
             +   + G   S      G W      CS            LP      ++   + G P 
Sbjct: 1220 SQLSSSSGSSSSSVAPAAGTWVLQASQCSLTKACRQPPIVFLPKLVYDMVVSTDSSGLPK 1279

Query: 122  ALVTPQAPAVPSPGYVPAPSF 142
            A     A  +PSP  + A SF
Sbjct: 1280 A-----ASLLPSPSVMWASSF 1295


>gi|224994251 myotubularin related protein 11 isoform a [Homo
           sapiens]
          Length = 709

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 46/168 (27%), Positives = 62/168 (36%), Gaps = 27/168 (16%)

Query: 73  RGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVP 132
           RG+Q+G L    Q Y PG             P A N F L LS           Q     
Sbjct: 482 RGKQSGQLNSYTQVYTPGY----------SQPPAGNSFNLQLSVWDWDLRYSNAQILQFQ 531

Query: 133 SPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCP-ADS------ 185
           +PGY   P  C P  W    P+P +   G  +   L +       +  CP  DS      
Sbjct: 532 NPGY--DPEHC-PDSW-LPRPQPSFMVPGPPSSVWLFSRGALTPLNQLCPWRDSPSLLAV 587

Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHG 233
           SS     PA+    +++ +WG       P+H  A PLP  +L   + G
Sbjct: 588 SSRWLPRPAISSESLADQEWG------LPSHWGACPLPPGLLLPGYLG 629


>gi|89111941 myotubularin related protein 11 isoform b [Homo
           sapiens]
          Length = 640

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 46/168 (27%), Positives = 62/168 (36%), Gaps = 27/168 (16%)

Query: 73  RGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVP 132
           RG+Q+G L    Q Y PG             P A N F L LS           Q     
Sbjct: 410 RGKQSGQLNSYTQVYTPGY----------SQPPAGNSFNLQLSVWDWDLRYSNAQILQFQ 459

Query: 133 SPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCP-ADS------ 185
           +PGY   P  C P  W    P+P +   G  +   L +       +  CP  DS      
Sbjct: 460 NPGY--DPEHC-PDSW-LPRPQPSFMVPGPPSSVWLFSRGALTPLNQLCPWRDSPSLLAV 515

Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTPAHSMAHPLPARVLGSAFHG 233
           SS     PA+    +++ +WG       P+H  A PLP  +L   + G
Sbjct: 516 SSRWLPRPAISSESLADQEWG------LPSHWGACPLPPGLLLPGYLG 557


>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
          Length = 1125

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQ-NGGLPR 82
           PG P + G D     + EAG  GAR   GP  +GQ   +   G   +G +G Q   GLP 
Sbjct: 512 PGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGK--KGSKGNQGQRGLPG 569

Query: 83  SEQP 86
            E P
Sbjct: 570 PEGP 573



 Score = 33.9 bits (76), Expect = 0.13
 Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 32/132 (24%)

Query: 25  GSPSIQGPDRP--------QNPRPEAGKDGARRSPGPTRQG-QGQRRLPVGASFQGWRGR 75
           G P ++GP  P        Q P+ + G+ G    PGP   G QG +       F G +G 
Sbjct: 667 GEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGT 726

Query: 76  QNGGLPRSE-------------------QPYRPGRWREGWRSCSGDLPSAWNWFL-LCLS 115
              GLP  +                   +P  PG  ++G +   GDL       + L   
Sbjct: 727 MGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPG--KQGLQGPKGDLGLTKEEIIKLITE 784

Query: 116 ACGC-PSALVTP 126
            CGC P    TP
Sbjct: 785 ICGCGPKCKETP 796



 Score = 33.1 bits (74), Expect = 0.22
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 25  GSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQ-GQGQRRLPVGASFQGWRGRQNGGLPRS 83
           G   IQGP  P  P+  AG+ G   S G   Q G    R PVG   QG +G + G +   
Sbjct: 455 GEQGIQGPIGPPGPQGPAGQ-GLPGSKGEVGQMGPTGPRGPVGIGVQGPKG-EPGSIGLP 512

Query: 84  EQPYRPGRWREGWRSCSGDLPSA 106
            QP  PG      +     LP A
Sbjct: 513 GQPGVPGEDGAAGKKGEAGLPGA 535


>gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]
          Length = 288

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 24 PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGW 72
          PGSP  +G   PQ P    GK G +  PGP      +  L  GA+  GW
Sbjct: 50 PGSPGEKGAPGPQGPPGPPGKMGPKGEPGPR---NCRELLSQGATLSGW 95


>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
           sapiens]
          Length = 330

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 55/175 (31%), Positives = 64/175 (36%), Gaps = 37/175 (21%)

Query: 3   SGSCILVAPAAAWTLGTSSPEPGSPSI--------QGPDRPQNPRPEAGKDGARRSPGPT 54
           SG+ +  AP +   LG + P   S  I          P R   PR  +  DG R  PGP 
Sbjct: 120 SGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPA 179

Query: 55  RQ--GQGQRRLPVGASFQGWRGRQNGGLPRSEQPYRPGRW--------REGWRSCSGDLP 104
           R       R  P G+  +G  G    G PR   P RPG          R   R  SG  P
Sbjct: 180 RTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDP-RPGEGFTARFLQPRGCGREFSGPFP 238

Query: 105 S--------AWNWFLLCLSACGCPSALVTPQ--------APA-VPSPGYVPAPSF 142
           S            +L  L   G   AL TP         AP+  PSP   PAPSF
Sbjct: 239 SRPGPRTPVPTAPYLAVLPERG-GRALTTPALARTPGSLAPSPPPSPNPRPAPSF 292


>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
           sapiens]
          Length = 330

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 55/175 (31%), Positives = 64/175 (36%), Gaps = 37/175 (21%)

Query: 3   SGSCILVAPAAAWTLGTSSPEPGSPSI--------QGPDRPQNPRPEAGKDGARRSPGPT 54
           SG+ +  AP +   LG + P   S  I          P R   PR  +  DG R  PGP 
Sbjct: 120 SGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPA 179

Query: 55  RQ--GQGQRRLPVGASFQGWRGRQNGGLPRSEQPYRPGRW--------REGWRSCSGDLP 104
           R       R  P G+  +G  G    G PR   P RPG          R   R  SG  P
Sbjct: 180 RTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDP-RPGEGFTARFLQPRGCGREFSGPFP 238

Query: 105 S--------AWNWFLLCLSACGCPSALVTPQ--------APA-VPSPGYVPAPSF 142
           S            +L  L   G   AL TP         AP+  PSP   PAPSF
Sbjct: 239 SRPGPRTPVPTAPYLAVLPERG-GRALTTPALARTPGSLAPSPPPSPNPRPAPSF 292


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 57/209 (27%), Positives = 70/209 (33%), Gaps = 33/209 (15%)

Query: 20  SSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG----------QGQRRLPV 65
           +S  PGSP ++G      PR   G+ G R  PG    P   G          +G R L  
Sbjct: 398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAG 457

Query: 66  GASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVT 125
               +G +G +    PR  Q       ++G R   GD     +         G P     
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD--------SGQPGPKGD 509

Query: 126 PQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADS 185
           P  P    PG   AP           EP P  G  GG     L  E    G     PAD 
Sbjct: 510 PGRPGFSYPGPRGAPG-------EKGEPGP-RGPEGGRGDFGLKGEPGRKGEKGE-PADP 560

Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTP 214
             P +  P  G RGV   + GE  P   P
Sbjct: 561 GPPGEPGPR-GPRGVPGPE-GEPGPPGDP 587


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 57/209 (27%), Positives = 70/209 (33%), Gaps = 33/209 (15%)

Query: 20  SSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG----------QGQRRLPV 65
           +S  PGSP ++G      PR   G+ G R  PG    P   G          +G R L  
Sbjct: 398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAG 457

Query: 66  GASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVT 125
               +G +G +    PR  Q       ++G R   GD     +         G P     
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD--------SGQPGPKGD 509

Query: 126 PQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADS 185
           P  P    PG   AP           EP P  G  GG     L  E    G     PAD 
Sbjct: 510 PGRPGFSYPGPRGAPG-------EKGEPGP-RGPEGGRGDFGLKGEPGRKGEKGE-PADP 560

Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTP 214
             P +  P  G RGV   + GE  P   P
Sbjct: 561 GPPGEPGPR-GPRGVPGPE-GEPGPPGDP 587


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 57/209 (27%), Positives = 70/209 (33%), Gaps = 33/209 (15%)

Query: 20  SSPEPGSPSIQGPDRPQNPRPEAGKDGARRSPG----PTRQG----------QGQRRLPV 65
           +S  PGSP ++G      PR   G+ G R  PG    P   G          +G R L  
Sbjct: 398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAG 457

Query: 66  GASFQGWRGRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVT 125
               +G +G +    PR  Q       ++G R   GD     +         G P     
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD--------SGQPGPKGD 509

Query: 126 PQAPAVPSPGYVPAPSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADS 185
           P  P    PG   AP           EP P  G  GG     L  E    G     PAD 
Sbjct: 510 PGRPGFSYPGPRGAPG-------EKGEPGP-RGPEGGRGDFGLKGEPGRKGEKGE-PADP 560

Query: 186 SSPSKADPALGERGVSEVDWGEAAPSPTP 214
             P +  P  G RGV   + GE  P   P
Sbjct: 561 GPPGEPGPR-GPRGVPGPE-GEPGPPGDP 587


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 24  PGSPSIQGPDRPQNPRPEAGK------DGARRSPGPTRQGQGQRRLPVGASFQGWR---G 74
           P  PS QG ++PQ P P  GK       G  +  GP   G+ Q   P G   +  R   G
Sbjct: 36  PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95

Query: 75  RQNGGLPRSEQPYRP 89
           +  G  P+  +P  P
Sbjct: 96  KPQGPPPQGGKPQGP 110



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query: 23  EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVG 66
           +P  P  Q  + PQ P P AG +  +    P  Q QG  R P G
Sbjct: 127 KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 170



 Score = 28.9 bits (63), Expect = 4.1
 Identities = 33/127 (25%), Positives = 41/127 (32%), Gaps = 28/127 (22%)

Query: 22  PEPGSPSIQGPDRP---QNPRPEAGKDGARRSP-----GPTRQGQGQRRLPVGASFQGWR 73
           P  G    QGP  P   Q P P+  K  + RSP     GP  QG   +  P     +   
Sbjct: 61  PPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQS 120

Query: 74  GRQNGGLPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVPS 133
            R   G P+   P + G   +G    +G  P                     PQAP    
Sbjct: 121 ARSPPGKPQG-PPQQEGNNPQGPPPPAGGNPQ-------------------QPQAPPAGQ 160

Query: 134 PGYVPAP 140
           P   P P
Sbjct: 161 PQGPPRP 167


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 24  PGSPSIQGPDRPQNPRPEAGK------DGARRSPGPTRQGQGQRRLPVGASFQGWR---G 74
           P  PS QG ++PQ P P  GK       G  +  GP   G+ Q   P G   +  R   G
Sbjct: 36  PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95

Query: 75  RQNGGLPRSEQPYRP 89
           +  G  P+  +P  P
Sbjct: 96  KPQGPPPQGGKPQGP 110



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query: 23  EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVG 66
           +P  P  Q  + PQ P P AG +  +    P  Q QG  R P G
Sbjct: 147 KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQG 190



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 22  PEPGSPSIQGPDRP---QNPRPEAGKDGARRSPGPTRQG-QGQRRLPVGASFQGWRGRQN 77
           P  G    QGP  P   Q P P+  K  + RSP    QG   Q   P G   QG  G + 
Sbjct: 61  PPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQG--GNKP 118

Query: 78  GGLPRSEQPYRP 89
            G P   +P  P
Sbjct: 119 QGPPPPGKPQGP 130



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 23  EPGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGR----QNG 78
           +P  P  QG ++PQ P P     G       +R  +     P G   QG + +    Q G
Sbjct: 56  KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGG 115

Query: 79  GLPRSEQPYRPGR 91
             P+   P  PG+
Sbjct: 116 NKPQGPPP--PGK 126



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 12/87 (13%)

Query: 23  EPGSPSIQGPDRPQNPRPEAGKDG-----------ARRSPG-PTRQGQGQRRLPVGASFQ 70
           +P  P  QG ++PQ P P     G           AR  PG P    Q +   P G    
Sbjct: 106 KPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP 165

Query: 71  GWRGRQNGGLPRSEQPYRPGRWREGWR 97
                Q    P + QP  P R  +G R
Sbjct: 166 AGGNPQQPQAPPAGQPQGPPRPPQGGR 192


>gi|98986321 gliomedin [Homo sapiens]
          Length = 551

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 48/178 (26%), Positives = 58/178 (32%), Gaps = 40/178 (22%)

Query: 24  PGSPSIQGPDRPQNPRPEAGKDGARRSPGPTRQGQGQRRLPVGASFQGWRGRQNG----G 79
           PG   + G   PQ P+ E G +G R          G+  +P  A   G RG +      G
Sbjct: 153 PGHNGLDGQPGPQGPKGEKGANGKR----------GKMGIPGAAGNPGERGEKGDHGELG 202

Query: 80  LPRSEQPYRPGRWREGWRSCSGDLPSAWNWFLLCLSACGCPSALVTPQAPAVPSPGYVPA 139
           L  +E P  PG+  E      GD     N  LL     G       P  P  P P   P 
Sbjct: 203 LQGNEGP--PGQKGE-----KGDKGDVSNDVLL----AGAKGDQGPPGPPGPPGPPGPPG 251

Query: 140 PSFCHPHQWAASEPRPFWGYRGGCTRSMLCTEEQAVGADATCPADSSSPSKADPALGE 197
           P    P    A  PR    + G C            G     P D +   KAD    E
Sbjct: 252 P----PGSRRAKGPRQPSMFNGQCP-----------GETCAIPNDDTLVGKADEKASE 294


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,167,244
Number of Sequences: 37866
Number of extensions: 968190
Number of successful extensions: 8438
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 5702
Number of HSP's gapped (non-prelim): 2566
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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