Guide to the Human Genome
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Name: DSG1 Sequence: fasta or formatted (1049aa) NCBI GI: 119703744
Description:

desmoglein 1 preproprotein

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         52           3
 C cysteine            1.7         18           2
 D aspartate           5.6         59           2
 E glutamate           6.3         66           2
 F phenylalanine       3.2         34           2
 G glycine             9.4         99           3
 H histidine           1.8         19           2
 I isoleucine          7.5         79           2
 K lysine              3.2         34           2
 L leucine             6.4         67           2
 M methionine          2.9         30           1
 N asparagine          6.4         67           2
 P proline             5.5         58           2
 Q glutamine           3.1         32           2
 R arginine            4.7         49           2
 S serine              9.5        100           3
 T threonine           7.1         75           3
 V valine              7.1         75           3
 W tryptophan          0.7          7           1
 Y tyrosine            2.8         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   desmoglein 1 preproprotein 
DSG3                  0.332   desmoglein 3 preproprotein 
DSG4                  0.278   desmoglein 4 isoform 1 
DSG4                  0.278   desmoglein 4 isoform 2 
DSG2                  0.250   desmoglein 2 preproprotein 
DSC2                  0.121   desmocollin 2 isoform Dsc2a preproprotein 
CDH1                  0.112   cadherin 1, type 1 preproprotein 
DSC3                  0.109   desmocollin 3 isoform Dsc3b preproprotein 
DSC3                  0.109   desmocollin 3 isoform Dsc3a preproprotein 
CDH4                  0.107   cadherin 4, type 1 preproprotein 
DSC2                  0.106   desmocollin 2 isoform Dsc2b preproprotein 
CDH2                  0.105   cadherin 2, type 1 preproprotein 
CDH3                  0.096   cadherin 3, type 1 preproprotein 
DSC1                  0.092   desmocollin 1 isoform Dsc1b preproprotein 
DSC1                  0.092   desmocollin 1 isoform Dsc1a preproprotein 
CDH15                 0.090   cadherin 15 preproprotein 
CDH26                 0.082   cadherin-like 26 isoform a 
CDH13                 0.080   cadherin 13 preproprotein 
CDH12                 0.067   cadherin 12, type 2 preproprotein 
CDH20                 0.066   cadherin 20, type 2 preproprotein 
CDH18                 0.063   cadherin 18, type 2 preproprotein 
CDH6                  0.062   cadherin 6, type 2 preproprotein 
CDH11                 0.061   cadherin 11, type 2 preproprotein 
CDH24                 0.060   cadherin-like 24 isoform 2 
CDH24                 0.060   cadherin-like 24 isoform 1 
CDH7                  0.057   cadherin 7, type 2 preproprotein 
CDH7                  0.057   cadherin 7, type 2 preproprotein 
CDH10                 0.057   cadherin 10, type 2 preproprotein 
CDH17                 0.055   cadherin 17 precursor 
CDH17                 0.055   cadherin 17 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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