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Search of human proteins with 239756691
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens] 650 0.0
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ... 650 0.0
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ... 648 0.0
gi|239752706 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239747242 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo ... 43 4e-04
gi|126090909 engrailed homeobox 1 [Homo sapiens] 40 0.004
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 38 0.010
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.052
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 35 0.068
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 35 0.12
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 35 0.12
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens] 34 0.15
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens] 34 0.15
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens] 34 0.15
gi|40806170 spastin isoform 2 [Homo sapiens] 34 0.20
gi|11875211 spastin isoform 1 [Homo sapiens] 34 0.20
gi|145386517 phostensin [Homo sapiens] 34 0.20
gi|199559805 phostensin [Homo sapiens] 34 0.20
gi|156071474 solute carrier family 4, anion exchanger, member 2 ... 33 0.26
gi|239757026 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239753665 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239748314 PREDICTED: hypothetical protein XP_002346609 [Homo ... 33 0.26
gi|239746055 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239742212 PREDICTED: hypothetical protein XP_002342451 [Homo ... 33 0.26
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 33 0.34
gi|46559747 hypothetical protein LOC399947 [Homo sapiens] 33 0.34
gi|50345831 forkhead box J3 [Homo sapiens] 33 0.34
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 33 0.44
gi|41352061 metalloprotease 1 [Homo sapiens] 33 0.44
>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 650 bits (1678), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ
Sbjct: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
Query: 61 LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA 120
LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA
Sbjct: 61 LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA 120
Query: 121 LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ 180
LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ
Sbjct: 121 LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ 180
Query: 181 GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE 240
GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE
Sbjct: 181 GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE 240
Query: 241 AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV 300
AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV
Sbjct: 241 AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV 300
Query: 301 PQDLEGPTRALQQLQVPRV 319
PQDLEGPTRALQQLQVPRV
Sbjct: 301 PQDLEGPTRALQQLQVPRV 319
>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
sapiens]
Length = 319
Score = 650 bits (1678), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ
Sbjct: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
Query: 61 LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA 120
LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA
Sbjct: 61 LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA 120
Query: 121 LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ 180
LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ
Sbjct: 121 LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ 180
Query: 181 GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE 240
GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE
Sbjct: 181 GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE 240
Query: 241 AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV 300
AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV
Sbjct: 241 AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV 300
Query: 301 PQDLEGPTRALQQLQVPRV 319
PQDLEGPTRALQQLQVPRV
Sbjct: 301 PQDLEGPTRALQQLQVPRV 319
>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
sapiens]
Length = 319
Score = 648 bits (1671), Expect = 0.0
Identities = 318/319 (99%), Positives = 318/319 (99%)
Query: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ
Sbjct: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
Query: 61 LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEA 120
LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAW WRGKRSDGGQTHQPQGPRPPSEA
Sbjct: 61 LLLVPNFILAGLRETNPWRRESREAEPGSGKTNAAWGWRGKRSDGGQTHQPQGPRPPSEA 120
Query: 121 LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ 180
LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ
Sbjct: 121 LALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQ 180
Query: 181 GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE 240
GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE
Sbjct: 181 GGRTTIFQGGGGLQLAGVLLHQLQGGQLHKEEGRPSPVLHEGVHQLLAQAAELVPVGAGE 240
Query: 241 AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV 300
AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV
Sbjct: 241 AGAGAFLRQLLARHGQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLV 300
Query: 301 PQDLEGPTRALQQLQVPRV 319
PQDLEGPTRALQQLQVPRV
Sbjct: 301 PQDLEGPTRALQQLQVPRV 319
>gi|239752706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 42.7 bits (99), Expect = 4e-04
Identities = 49/126 (38%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 19 PPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSR-VLQQLLL---VPNFILAGLRE 74
PP R R + PP +PHPAP+P A A Q GSR V ++ LL P+ A L
Sbjct: 28 PPPRGTARAR-PPLRPHPAPRPREMAA---AAPQNGSRSVAEKHLLNAVTPSPCPAPLAP 83
Query: 75 T--NPWRRESREAEPGSGKT-NAAWRWRGKRSDGGQTH-QPQGPRPPSEALALEGSCAGR 130
T +P RR P G T + A + RG T QP GP S L L+G+ AGR
Sbjct: 84 TSFSPPRRPGLPTPPRPGATGSGARQQRGAFVRAHATFTQPHGPL--SGGLFLKGATAGR 141
Query: 131 ---PPP 133
PPP
Sbjct: 142 NGAPPP 147
>gi|239747242 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 42.7 bits (99), Expect = 4e-04
Identities = 49/126 (38%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 19 PPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSR-VLQQLLL---VPNFILAGLRE 74
PP R R + PP +PHPAP+P A A Q GSR V ++ LL P+ A L
Sbjct: 28 PPPRGTARAR-PPLRPHPAPRPREMAA---AAPQNGSRSVAEKHLLNAVTPSPCPAPLAP 83
Query: 75 T--NPWRRESREAEPGSGKT-NAAWRWRGKRSDGGQTH-QPQGPRPPSEALALEGSCAGR 130
T +P RR P G T + A + RG T QP GP S L L+G+ AGR
Sbjct: 84 TSFSPPRRPGLPTPPRPGATGSGARQQRGAFVRAHATFTQPHGPL--SGGLFLKGATAGR 141
Query: 131 ---PPP 133
PPP
Sbjct: 142 NGAPPP 147
>gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo
sapiens]
Length = 170
Score = 42.7 bits (99), Expect = 4e-04
Identities = 49/126 (38%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 19 PPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSR-VLQQLLL---VPNFILAGLRE 74
PP R R + PP +PHPAP+P A A Q GSR V ++ LL P+ A L
Sbjct: 28 PPPRGTARAR-PPLRPHPAPRPREMAA---AAPQNGSRSVAEKHLLNPVTPSPCPAPLAP 83
Query: 75 T--NPWRRESREAEPGSGKT-NAAWRWRGKRSDGGQTH-QPQGPRPPSEALALEGSCAGR 130
T +P RR P G T + A + RG T QP GP S L L+G+ AGR
Sbjct: 84 TSFSPPRRPGLPTPPRPGATGSGARQQRGAFVRAHATFTQPHGPL--SGGLFLKGATAGR 141
Query: 131 ---PPP 133
PPP
Sbjct: 142 NGAPPP 147
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 39.7 bits (91), Expect = 0.004
Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 22/195 (11%)
Query: 30 PPHKPHPAPQPLP---HQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRR--ESRE 84
PPH P P PQ L HQ + A + +L P+F G ++ P + +
Sbjct: 75 PPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDF---GCKKEQPPPQLLVAAA 131
Query: 85 AEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGSCAGRPPPPACSPTCAVVC 144
A G+G R RG+ + G P G R P A L A PP P A
Sbjct: 132 ARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAA--- 188
Query: 145 GDGLCQLLHLGQAAGAATLLLTSRLLSWRILRLGLQGGRTTIFQGGGGLQLAGVLLHQLQ 204
G G + + AA AA + + + GG + GGG G
Sbjct: 189 GAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGS-----GGGAGSPGA------ 237
Query: 205 GGQLHKEEGRPSPVL 219
G + E G P+ +L
Sbjct: 238 QGTKYPEHGNPAILL 252
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 38.1 bits (87), Expect = 0.010
Identities = 50/194 (25%), Positives = 58/194 (29%), Gaps = 41/194 (21%)
Query: 30 PPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGS 89
PP KP P PQPLP A G F+ + WRR PG
Sbjct: 904 PPAKPPPPPQPLPSPAYPAPRPAPGP---------APFVPRERASVDRWRRTKGAGPPGG 954
Query: 90 -----------------------GKTNAAWRWRGKRSDGGQTHQPQGPRPPS-------- 118
G+ AA R R QP PPS
Sbjct: 955 AGLADGFHRYYGPIEPQGLGLGLGEARAAPRGAAGRPLSPPAAQPPQKPPPSYFAIVRDK 1014
Query: 119 -EALALEGSCAGRPPPPACSPTCAVVCGDGLCQLLHLGQAAGAATLLLTSRLLSWRILRL 177
A G+ G P PPA A G LC+L ++ A S S +L
Sbjct: 1015 EPAEPPAGAFPGFPSPPAPPAAAATAVGPPLCRLAFEDESPPAPARWPRSDPESQPLLGP 1074
Query: 178 GLQGGRTTIFQGGG 191
G G T GGG
Sbjct: 1075 GAGGAGGTGGAGGG 1088
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.8 bits (81), Expect = 0.052
Identities = 35/123 (28%), Positives = 44/123 (35%), Gaps = 14/123 (11%)
Query: 19 PPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPW 78
PP ++ Q PPH+P P PQP Q + V+ Q G+ P
Sbjct: 72 PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQ----GPGPAPGVGSAPP- 126
Query: 79 RRESREAEPGSGKTNAAWRWRG----KRSDGGQTHQPQG---PRPPSEALALEGSCAGRP 131
S A P + T+ A G T P G P PPS + AG P
Sbjct: 127 --ASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP 184
Query: 132 PPP 134
PPP
Sbjct: 185 PPP 187
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 35.4 bits (80), Expect = 0.068
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 17 HGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGS------RVLQ---QLLLVPNF 67
HGP R++ + P P P+ P H R L G + G VL+ QL N
Sbjct: 66 HGPSWRKKYSLVNRP--PGPSDPPADHAVRPLHGARGGQPPVPQQHVLERQVQLSQGQNV 123
Query: 68 ILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGSC 127
++ + + A+ GS + W +R G+ P+G PS G+C
Sbjct: 124 VIKVKPPSKSGSASASGAQRGSLEEFEETPWSDQRPREGEGEPPRGQLQPSRPTRARGTC 183
Query: 128 AGRPPPPAC 136
+ P C
Sbjct: 184 SVEDPLLVC 192
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 34.7 bits (78), Expect = 0.12
Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 18 GPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNP 77
GPP R + PP + + P PH + +G Q P G E P
Sbjct: 154 GPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP-----GKPEGPP 208
Query: 78 WR--RESREAEPGSGKTNAAWRWRGKRSDGGQTH--QPQGPRPPSEALALEGSCAGRPPP 133
+ +S+ P GK G + G H +PQGP P EG+ RPPP
Sbjct: 209 PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQ------EGNKPQRPPP 262
Query: 134 P 134
P
Sbjct: 263 P 263
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 34.7 bits (78), Expect = 0.12
Identities = 35/131 (26%), Positives = 43/131 (32%), Gaps = 25/131 (19%)
Query: 30 PPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETN----PWRRESREA 85
PP P P P P P Q E +G VL ++ + LR P +
Sbjct: 142 PPPPPQPPPSPPPAQ----HAEPDGDEVLLRIPAFSRDLYLLLRRDGRFLAPRFAVEQRP 197
Query: 86 EPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGSCAGRPPPPACSPTCAVVCG 145
PG G T AA PQ P PP G+ P A T CG
Sbjct: 198 NPGPGPTGAA-------------SAPQPPAPPDAGCFYTGAVLRHPGSLASFST----CG 240
Query: 146 DGLCQLLHLGQ 156
GL + L +
Sbjct: 241 GGLMGFIQLNE 251
>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 34.3 bits (77), Expect = 0.15
Identities = 45/174 (25%), Positives = 61/174 (35%), Gaps = 41/174 (23%)
Query: 2 PTQGKLKKSLLRACVHGPPSRRQMRDQ---------HPPHK-----PHPAPQP---LPHQ 44
PT + ++ LR H PP RQ + PP+ P AP P LP
Sbjct: 135 PTCPRRQRRWLRTTPHPPPPTRQGSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPEL 194
Query: 45 AR---DLA-----------GEQEGSRVLQQLLLVPNFILAGLRETNPWRR---ESREAEP 87
R DL GE G R+ L P + + R P + +R+ P
Sbjct: 195 RRGKQDLLSADSGLPAVDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGTRARDPAP 254
Query: 88 GSGKTNAAWRWRGKRSDGGQTHQPQGPRPP-------SEALALEGSCAGRPPPP 134
G+ + AA +T PRPP + + SCA PPPP
Sbjct: 255 GASQLRAAHSPHRGGGGAPRTQLAAPPRPPLPQENAAAGLASCSASCAAVPPPP 308
>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 34.3 bits (77), Expect = 0.15
Identities = 45/174 (25%), Positives = 61/174 (35%), Gaps = 41/174 (23%)
Query: 2 PTQGKLKKSLLRACVHGPPSRRQMRDQ---------HPPHK-----PHPAPQP---LPHQ 44
PT + ++ LR H PP RQ + PP+ P AP P LP
Sbjct: 135 PTCPRRQRRWLRTTPHPPPPTRQGSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPEL 194
Query: 45 AR---DLA-----------GEQEGSRVLQQLLLVPNFILAGLRETNPWRR---ESREAEP 87
R DL GE G R+ L P + + R P + +R+ P
Sbjct: 195 RRGKQDLLSADSGLPAVDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGTRARDPAP 254
Query: 88 GSGKTNAAWRWRGKRSDGGQTHQPQGPRPP-------SEALALEGSCAGRPPPP 134
G+ + AA +T PRPP + + SCA PPPP
Sbjct: 255 GASQLRAAHSPHRGGGGAPRTQLAAPPRPPLPQENAAAGLASCSASCAAVPPPP 308
>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 319
Score = 34.3 bits (77), Expect = 0.15
Identities = 45/174 (25%), Positives = 61/174 (35%), Gaps = 41/174 (23%)
Query: 2 PTQGKLKKSLLRACVHGPPSRRQMRDQ---------HPPHK-----PHPAPQP---LPHQ 44
PT + ++ LR H PP RQ + PP+ P AP P LP
Sbjct: 134 PTCPRRQRRWLRTTPHPPPPTRQGSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPEL 193
Query: 45 AR---DLA-----------GEQEGSRVLQQLLLVPNFILAGLRETNPWRR---ESREAEP 87
R DL GE G R+ L P + + R P + +R+ P
Sbjct: 194 RRGKQDLLSADSGLPAVDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGTRARDPAP 253
Query: 88 GSGKTNAAWRWRGKRSDGGQTHQPQGPRPP-------SEALALEGSCAGRPPPP 134
G+ + AA +T PRPP + + SCA PPPP
Sbjct: 254 GASQLRAAHSPHRGGGGAPRTQLAAPPRPPLPQENAAAGLASCSASCAAVPPPP 307
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 33.9 bits (76), Expect = 0.20
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 99 RGKRSDGGQTHQPQGPRPPSEALALEGSCAGRPPPP 134
RGK+ G P PRPP LA AG PPP
Sbjct: 7 RGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPP 42
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 33.9 bits (76), Expect = 0.20
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 99 RGKRSDGGQTHQPQGPRPPSEALALEGSCAGRPPPP 134
RGK+ G P PRPP LA AG PPP
Sbjct: 7 RGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPP 42
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 20 PSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWR 79
PS +MRDQ P + + P + R+ + G Q+L L P E WR
Sbjct: 124 PSPGEMRDQSPKGRESREERLSPRETRE---RRLGIGGAQELSLRP-------LEARDWR 173
Query: 80 RESREAEPGSGKTNAAWRWR 99
+ E S + + AW+WR
Sbjct: 174 QSPGEVGDRSSRLSEAWKWR 193
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 20 PSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWR 79
PS +MRDQ P + + P + R+ + G Q+L L P E WR
Sbjct: 124 PSPGEMRDQSPKGRESREERLSPRETRE---RRLGIGGAQELSLRP-------LEARDWR 173
Query: 80 RESREAEPGSGKTNAAWRWR 99
+ E S + + AW+WR
Sbjct: 174 QSPGEVGDRSSRLSEAWKWR 193
>gi|156071474 solute carrier family 4, anion exchanger, member 2
(erythrocyte membrane protein band 3-like 1) [Homo
sapiens]
Length = 1241
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 21/137 (15%)
Query: 19 PPSRRQMRDQHPPHKPHPAPQPLP----------HQARDLAGEQEGSRVLQQ--LLLVPN 66
P +RR+ Q P KP P P + D A E EG+R L Q + P+
Sbjct: 91 PDARRRKTPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTPS 150
Query: 67 FILAGLRETNPWRRESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALAL--- 123
+ L+E + R++ P S + S G Q Q +EA+A+
Sbjct: 151 SVQFFLQEDDSADRKAERTSPSSPAPLPHQEATPRASKGAQA-GTQVEEAEAEAVAVASG 209
Query: 124 -----EGSCAGRPPPPA 135
+G +GRP P A
Sbjct: 210 TAGGDDGGASGRPLPKA 226
>gi|239757026 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 33.5 bits (75), Expect = 0.26
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 20 PSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWR 79
PSRR+ Q P PH L H EQE +LQ ++G T W
Sbjct: 31 PSRRRAHTQRTPCTPHTLAPLLTHTHTLSLAEQEPLTILQ---------VSG-PATARWA 80
Query: 80 RESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
+ SR PG + R +RS +H G PP+ L L S
Sbjct: 81 QTSRFPFPGFSLGDDDEGRRNQRSPVWGSHHYSGYPPPAACLRLPTS 127
>gi|239753665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 233
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 188 QGGGGLQLAGVLLHQLQGGQLH---------KEEGRPSPVLHE-GVHQLLAQAAELVPVG 237
QG G LQ G L Q+Q G + G P P++H G H ++A P+G
Sbjct: 69 QGTGCLQCGGALTAQIQQGVKDFALDLPGALRHAGHPQPLVHGLGGHDVVAGIGVNPPLG 128
Query: 238 AGEAGAGAFLRQLLARHGQEVEVR 261
G A GA Q Q+++ R
Sbjct: 129 QGSADDGADPSQEGENEAQQLQPR 152
>gi|239748314 PREDICTED: hypothetical protein XP_002346609 [Homo
sapiens]
Length = 233
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 188 QGGGGLQLAGVLLHQLQGGQLH---------KEEGRPSPVLHE-GVHQLLAQAAELVPVG 237
QG G LQ G L Q+Q G + G P P++H G H ++A P+G
Sbjct: 69 QGTGCLQCGGALTAQIQQGVKDFALDLPGALRHAGHPQPLVHGLGGHDVVAGIGVNPPLG 128
Query: 238 AGEAGAGAFLRQLLARHGQEVEVR 261
G A GA Q Q+++ R
Sbjct: 129 QGSADDGADPSQEGENEAQQLQPR 152
>gi|239746055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 33.5 bits (75), Expect = 0.26
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 20 PSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWR 79
PSRR+ Q P PH L H EQE +LQ ++G T W
Sbjct: 31 PSRRRAHTQRTPCTPHTLAPLLTHTHTLSLAEQEPLTILQ---------VSG-PATARWA 80
Query: 80 RESREAEPGSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
+ SR PG + R +RS +H G PP+ L L S
Sbjct: 81 QTSRFPFPGFSLGDDDEGRRNQRSPVWGSHHYSGYPPPAACLRLPTS 127
>gi|239742212 PREDICTED: hypothetical protein XP_002342451 [Homo
sapiens]
Length = 233
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 188 QGGGGLQLAGVLLHQLQGGQLH---------KEEGRPSPVLHE-GVHQLLAQAAELVPVG 237
QG G LQ G L Q+Q G + G P P++H G H ++A P+G
Sbjct: 69 QGTGCLQCGGALTAQIQQGVKDFALDLPGALRHAGHPQPLVHGLGGHDVVAGIGVNPPLG 128
Query: 238 AGEAGAGAFLRQLLARHGQEVEVR 261
G A GA Q Q+++ R
Sbjct: 129 QGSADDGADPSQEGENEAQQLQPR 152
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 33.1 bits (74), Expect = 0.34
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 79 RRESREAEP----GSGKTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGSCAGRPPPP 134
RR R A P S ++ R RGK DGG + + + R S G + + P P
Sbjct: 607 RRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKK-KRSRSRGEKRSGDGSEKAPAP 665
Query: 135 ACSPTCAVVCGD 146
A P+ + CGD
Sbjct: 666 APPPSGSTSCGD 677
>gi|46559747 hypothetical protein LOC399947 [Homo sapiens]
Length = 197
Score = 33.1 bits (74), Expect = 0.34
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 118 SEALALEGSCAGRPPPPACSP-------TCAVVCGDGLCQLLHL 154
S L +G CA PPPPA SP +C G+GL Q + L
Sbjct: 153 SPGLPCQGPCAPPPPPPASSPQGAHAASSCLDTAGEGLLQTVVL 196
>gi|50345831 forkhead box J3 [Homo sapiens]
Length = 622
Score = 33.1 bits (74), Expect = 0.34
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 19 PPSRRQMRDQHPPHKPHPAPQPLPH 43
PP R QHP PHPAP P H
Sbjct: 383 PPHRPHGLPQHPQRSPHPAPHPQQH 407
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 32.7 bits (73), Expect = 0.44
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
Query: 91 KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
W KR+ + +P P P + A GS
Sbjct: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
>gi|41352061 metalloprotease 1 [Homo sapiens]
Length = 1037
Score = 32.7 bits (73), Expect = 0.44
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 1 MPTQGKLKKSLLRACVHGPPSRRQMRDQHPPHKPHPAPQPLPHQARDLAGEQEGSRVLQQ 60
MP K + LR+ RR P +PH +P+P + A GS+V+++
Sbjct: 789 MPQTEKAVEDFLRSIGRSKKERR-------PVRPHTVEKPVPSSSGGDAHVPHGSQVIRK 841
Query: 61 LLLVPNFILAGLRETNPWRRESREAEP 87
L++ P F PW+ ++ P
Sbjct: 842 LVMEPTF--------KPWQMKTHFLMP 860
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,772,961
Number of Sequences: 37866
Number of extensions: 919974
Number of successful extensions: 5569
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 5321
Number of HSP's gapped (non-prelim): 347
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.