Guide to the Human Genome
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Name: LOC100290150 Sequence: fasta or formatted (233aa) NCBI GI: 239748314
Description:

PREDICTED: hypothetical protein XP_002346609

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         23           2
 C cysteine            2.6          6           1
 D aspartate           4.3         10           2
 E glutamate           4.3         10           1
 F phenylalanine       1.3          3           1
 G glycine            13.7         32           2
 H histidine           6.0         14           2
 I isoleucine          2.1          5           1
 K lysine              3.0          7           1
 L leucine            11.2         26           2
 M methionine          0.4          1           1
 N asparagine          3.9          9           1
 P proline             6.4         15           2
 Q glutamine           6.0         14           2
 R arginine            8.6         20           4
 S serine              3.0          7           1
 T threonine           3.4          8           1
 V valine              6.0         14           2
 W tryptophan          2.6          6           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346609 
LOC100288275          1.000   PREDICTED: hypothetical protein XP_002342451 
LOC100293668          0.996   PREDICTED: hypothetical protein 
LOC100291609          0.023   PREDICTED: hypothetical protein XP_002346061 
LOC100292419          0.017   PREDICTED: hypothetical protein 
LOC100290297          0.017   PREDICTED: hypothetical protein XP_002347742 
LOC100288674          0.017   PREDICTED: hypothetical protein XP_002343540 
ZC3H4                 0.017   zinc finger CCCH-type containing 4 
ZNF517                0.017   zinc finger protein 517 
LOC100292062          0.015   PREDICTED: hypothetical protein XP_002346314 
LOC100290552          0.015   PREDICTED: hypothetical protein XP_002347697 
LOC728767             0.015   PREDICTED: hypothetical protein 
LOC100289917          0.015   PREDICTED: hypothetical protein XP_002347096 
LOC728767             0.015   PREDICTED: hypothetical protein 
MNX1                  0.015   homeo box HB9 
LOC100287812          0.013   PREDICTED: hypothetical protein XP_002343253 
LOC100292292          0.013   PREDICTED: hypothetical protein 
LOC100291384          0.013   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.013   PREDICTED: hypothetical protein XP_002343004 
LOC100289993          0.011   PREDICTED: hypothetical protein XP_002348146 
LOC100288915          0.011   PREDICTED: hypothetical protein XP_002343820 
SFRS11                0.011   splicing factor, arginine/serine-rich 11 
FLJ37078              0.011   hypothetical protein LOC222183 
KANK3                 0.011   ankyrin repeat domain 47 
LOC100287514          0.008   PREDICTED: hypothetical protein XP_002343754 
C1QTNF5               0.008   C1q and tumor necrosis factor related protein 5 prec...
LOC100293065          0.008   PREDICTED: hypothetical protein 
LOC100292378          0.008   PREDICTED: hypothetical protein 
LOC100287709          0.008   PREDICTED: hypothetical protein 
LOC100287709          0.008   PREDICTED: hypothetical protein XP_002343278 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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