Guide to the Human Genome
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Name: LOC730045 Sequence: fasta or formatted (141aa) NCBI GI: 239757026
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {141aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         13           3
 C cysteine            1.4          2           1
 D aspartate           2.8          4           3
 E glutamate           3.5          5           1
 F phenylalanine       3.5          5           1
 G glycine             7.1         10           1
 H histidine           4.3          6           2
 I isoleucine          2.1          3           1
 K lysine              2.1          3           1
 L leucine            12.1         17           2
 M methionine          0.7          1           1
 N asparagine          1.4          2           1
 P proline            11.3         16           3
 Q glutamine           5.0          7           1
 R arginine            8.5         12           3
 S serine              7.8         11           1
 T threonine           9.2         13           1
 V valine              2.1          3           1
 W tryptophan          3.5          5           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730045             1.000   PREDICTED: hypothetical protein 
LOC100290297          0.043   PREDICTED: hypothetical protein XP_002347742 
LOC100292419          0.029   PREDICTED: hypothetical protein 
LOC100288674          0.029   PREDICTED: hypothetical protein XP_002343540 
LOC100293526          0.025   PREDICTED: hypothetical protein 
LOC100291411          0.025   PREDICTED: hypothetical protein XP_002348184 
LOC100288664          0.025   PREDICTED: hypothetical protein XP_002343845 
LOC441476             0.018   hypothetical protein LOC441476 
PTCRA                 0.007   pre T-cell antigen receptor alpha 
ZCCHC5                0.007   zinc finger, CCHC domain containing 5 
LOC100131871          0.007   PREDICTED: similar to hCG1779533 
LOC100130172          0.007   PREDICTED: hypothetical protein 
MUC3A                 0.007   PREDICTED: mucin 3A, intestinal 
LOC729737             0.007   PREDICTED: hypothetical protein 
LOC732156             0.007   PREDICTED: similar to Mucin-3A 
AMOT                  0.007   angiomotin isoform 2 
AMOT                  0.007   angiomotin isoform 1 
ANKRD13D              0.007   ankyrin repeat domain 13 family, member D 
LOC100293176          0.007   PREDICTED: hypothetical protein 
C10orf105             0.007   PREDICTED: chromosome 10 open reading frame 105 [Ho...
LOC100289054          0.007   PREDICTED: hypothetical protein 
LOC100289763          0.007   PREDICTED: hypothetical protein XP_002347867 
C10orf105             0.007   PREDICTED: chromosome 10 open reading frame 105 [Ho...
LOC100289054          0.007   PREDICTED: hypothetical protein XP_002343716 
LOC100289681          0.007   PREDICTED: hypothetical protein XP_002343623 
C10orf105             0.007   PREDICTED: chromosome 10 open reading frame 105 [Ho...
LOC100130172          0.007   PREDICTED: hypothetical protein 
LMTK2                 0.007   lemur tyrosine kinase 2 
PRR4                  0.007   proline rich 4 (lacrimal) isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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