Guide to the Human Genome
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Name: LOC100288612 Sequence: fasta or formatted (170aa) NCBI GI: 239747242
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {170aa} PREDICTED: hypothetical protein XP_002342081
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         20           4
 C cysteine            0.6          1           1
 D aspartate           0.6          1           1
 E glutamate           3.5          6           2
 F phenylalanine       2.4          4           1
 G glycine            11.8         20           2
 H histidine           2.4          4           1
 I isoleucine          0.0          0           0
 K lysine              1.8          3           1
 L leucine             5.9         10           2
 M methionine          1.2          2           1
 N asparagine          1.8          3           1
 P proline            20.0         34           3
 Q glutamine           3.5          6           2
 R arginine           11.8         20           2
 S serine              8.2         14           1
 T threonine           7.1         12           2
 V valine              5.3          9           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292453          1.000   PREDICTED: hypothetical protein 
LOC100288612          0.994   PREDICTED: hypothetical protein XP_002342081 
NACA                  0.075   nascent polypeptide-associated complex alpha subuni...
SYNPO                 0.072   synaptopodin isoform A 
SAMD1                 0.069   sterile alpha motif domain containing 1 
TAF4                  0.069   TBP-associated factor 4 
SFPQ                  0.066   splicing factor proline/glutamine rich (polypyrimidin...
WIPF3                 0.063   WAS/WASL interacting protein family, member 3 [Homo...
SREBF1                0.063   sterol regulatory element binding transcription fact...
SREBF1                0.063   sterol regulatory element binding transcription fact...
PCLO                  0.063   piccolo isoform 2 
PCLO                  0.063   piccolo isoform 1 
CDKN1C                0.060   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.060   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.060   cyclin-dependent kinase inhibitor 1C isoform a 
INPPL1                0.060   inositol polyphosphate phosphatase-like 1 
PDCD6IP               0.060   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.060   programmed cell death 6 interacting protein isoform ...
FLJ22184              0.060   PREDICTED: hypothetical protein FLJ22184 
PRB3                  0.060   proline-rich protein BstNI subfamily 3 precursor [H...
LOC100290297          0.060   PREDICTED: hypothetical protein XP_002347742 
PRR12                 0.057   proline rich 12 
LOC643355             0.054   PREDICTED: hypothetical protein 
LOC643355             0.054   PREDICTED: hypothetical protein 
GGN                   0.054   gametogenetin 
LOC100292419          0.054   PREDICTED: hypothetical protein 
LOC100288674          0.054   PREDICTED: hypothetical protein XP_002343540 
SYN1                  0.054   synapsin I isoform Ia 
SYN1                  0.054   synapsin I isoform Ib 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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