Guide to the Human Genome
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Name: LOC100293182 Sequence: fasta or formatted (151aa) NCBI GI: 239756311
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            23.8         36           3
 C cysteine            3.3          5           1
 D aspartate           1.3          2           1
 E glutamate           3.3          5           1
 F phenylalanine       0.7          1           1
 G glycine            13.9         21           2
 H histidine           2.6          4           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             4.6          7           1
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             3.3          5           1
 Q glutamine          11.3         17           2
 R arginine           15.2         23           2
 S serine              2.0          3           1
 T threonine           0.7          1           1
 V valine              9.9         15           2
 W tryptophan          2.6          4           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SYNCRIP               0.039   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.039   synaptotagmin binding, cytoplasmic RNA interacting ...
PLEC1                 0.036   plectin 1 isoform 11 
PLEC1                 0.036   plectin 1 isoform 10 
PLEC1                 0.036   plectin 1 isoform 8 
PLEC1                 0.036   plectin 1 isoform 7 
PLEC1                 0.036   plectin 1 isoform 6 
PLEC1                 0.036   plectin 1 isoform 3 
PLEC1                 0.036   plectin 1 isoform 2 
PLEC1                 0.036   plectin 1 isoform 1 
SYNCRIP               0.032   synaptotagmin binding, cytoplasmic RNA interacting ...
NKX2-1                0.032   thyroid transcription factor 1 isoform 1 
NKX2-1                0.032   thyroid transcription factor 1 isoform 2 
LOC100129852          0.032   PREDICTED: hypothetical protein 
LOC100129852          0.032   PREDICTED: hypothetical protein 
LOC100129852          0.032   PREDICTED: hypothetical protein 
ANKRD36               0.028   PREDICTED: ankyrin repeat domain 36 
LOC100288603          0.028   PREDICTED: hypothetical protein XP_002343773 
NES                   0.028   nestin 
LOC100291596          0.028   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.028   PREDICTED: hypothetical protein 
LOC100288068          0.028   PREDICTED: hypothetical protein XP_002343259 
LOC100292292          0.028   PREDICTED: hypothetical protein 
LOC100291384          0.028   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.028   PREDICTED: hypothetical protein XP_002343004 
LOC100128960          0.025   PREDICTED: similar to paraneoplastic antigen MA2 [H...
MLL4                  0.025   myeloid/lymphoid or mixed-lineage leukemia 4 
EID2                  0.025   CREBBP/EP300 inhibitor 2 
LOC100128960          0.025   PREDICTED: similar to Putative paraneoplastic antig...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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