Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288603 Sequence: fasta or formatted (302aa) NCBI GI: 239746542
Description:

PREDICTED: hypothetical protein XP_002343773

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         43           6
 C cysteine            2.6          8           1
 D aspartate           3.3         10           1
 E glutamate           4.6         14           2
 F phenylalanine       1.3          4           1
 G glycine             7.3         22           1
 H histidine           4.3         13           1
 I isoleucine          1.0          3           1
 K lysine              0.7          2           1
 L leucine            11.3         34           2
 M methionine          0.7          2           1
 N asparagine          0.3          1           1
 P proline             8.3         25           2
 Q glutamine           5.0         15           2
 R arginine           15.6         47           3
 S serine              7.0         21           2
 T threonine           3.3         10           1
 V valine              6.3         19           1
 W tryptophan          3.0          9           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343773 
LOC100291243          0.872   PREDICTED: hypothetical protein XP_002348077 
GPX4                  0.020   glutathione peroxidase 4 isoform C precursor 
RBMXL1                0.020   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.020   RNA binding motif protein, X-linked-like 1 
MYH14                 0.020   myosin, heavy chain 14 isoform 1 
MYH14                 0.020   myosin, heavy chain 14 isoform 2 
MYH14                 0.020   myosin, heavy chain 14 isoform 3 
LOC100293115          0.020   PREDICTED: hypothetical protein 
LOC100293327          0.018   PREDICTED: hypothetical protein 
LOC100132369          0.018   PREDICTED: hypothetical protein 
LOC100291252          0.018   PREDICTED: hypothetical protein XP_002347634 
LOC100132369          0.018   PREDICTED: hypothetical protein 
LOC100290693          0.018   PREDICTED: hypothetical protein XP_002346930 
LOC100287254          0.018   PREDICTED: hypothetical protein XP_002343484 
LOC100132369          0.018   PREDICTED: hypothetical protein 
LOC100289070          0.018   PREDICTED: hypothetical protein XP_002342806 
LOC729915             0.018   PREDICTED: similar to Putative POM121-like protein ...
LOC100289070          0.018   PREDICTED: hypothetical protein 
FLJ37078              0.017   hypothetical protein LOC222183 
PCNT                  0.017   pericentrin 
FAM48B1               0.017   hypothetical protein LOC100130302 
LOC100132345          0.015   PREDICTED: hypothetical protein 
ARL6IP4               0.015   SRp25 nuclear protein isoform 4 
ARL6IP4               0.015   SRp25 nuclear protein isoform 3 
ARL6IP4               0.015   SRp25 nuclear protein isoform 2 
ARL6IP4               0.015   SRp25 nuclear protein isoform 1 
LOC100287250          0.015   PREDICTED: hypothetical protein XP_002344493 
LOC100293182          0.013   PREDICTED: hypothetical protein 
XBP1                  0.013   X-box binding protein 1 isoform XBP1(U) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press