Guide to the Human Genome
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Name: LOC100129852 Sequence: fasta or formatted (435aa) NCBI GI: 239742946
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {435aa} PREDICTED: hypothetical protein
alt mRNA {435aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.0         74           3
 C cysteine            2.3         10           1
 D aspartate           2.1          9           1
 E glutamate           3.7         16           1
 F phenylalanine       1.6          7           1
 G glycine             6.4         28           2
 H histidine           2.8         12           2
 I isoleucine          0.9          4           1
 K lysine              3.7         16           3
 L leucine             7.4         32           2
 M methionine          1.1          5           1
 N asparagine          2.1          9           1
 P proline            14.7         64           3
 Q glutamine           2.8         12           2
 R arginine           14.9         65           3
 S serine              6.9         30           2
 T threonine           3.9         17           2
 V valine              3.9         17           1
 W tryptophan          1.4          6           2
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129852          1.000   PREDICTED: hypothetical protein 
LOC100129852          1.000   PREDICTED: hypothetical protein 
TAF4                  0.037   TBP-associated factor 4 
SAMD1                 0.036   sterile alpha motif domain containing 1 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
FLJ37078              0.031   hypothetical protein LOC222183 
LOC100289763          0.028   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.028   PREDICTED: hypothetical protein XP_002343623 
LOC100292172          0.028   PREDICTED: hypothetical protein 
SYNJ1                 0.026   synaptojanin 1 isoform b 
LOC729575             0.026   PREDICTED: hypothetical protein 
SYNJ1                 0.025   synaptojanin 1 isoform a 
ZFPM1                 0.025   zinc finger protein, multitype 1 
LOC100288110          0.025   PREDICTED: hypothetical protein 
LOC100288110          0.025   PREDICTED: hypothetical protein XP_002343007 
SCARF2                0.025   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.025   scavenger receptor class F, member 2 isoform 2 [Homo...
FOXQ1                 0.025   forkhead box Q1 
MAP7D1                0.025   MAP7 domain containing 1 
CASKIN1               0.024   CASK interacting protein 1 
PPRC1                 0.024   peroxisome proliferator-activated receptor gamma, co...
LOC729370             0.024   PREDICTED: hypothetical protein 
SRRM2                 0.024   splicing coactivator subunit SRm300 
LOC100131455          0.023   PREDICTED: hypothetical protein 
LOC100131455          0.023   PREDICTED: hypothetical protein 
LOC100131455          0.023   PREDICTED: hypothetical protein 
BAT2                  0.023   HLA-B associated transcript-2 
C2orf71               0.023   hypothetical protein LOC388939 
KIAA0754              0.023   hypothetical protein LOC643314 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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