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Search of human proteins with 239756295
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756295 PREDICTED: hypothetical protein [Homo sapiens] 260 1e-70
gi|239745230 PREDICTED: hypothetical protein XP_002343393 [Homo ... 138 1e-33
gi|169202942 PREDICTED: hypothetical protein [Homo sapiens] 32 0.082
gi|188536004 zinc finger protein 469 [Homo sapiens] 30 0.31
gi|239750092 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239744401 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 28 1.2
gi|62988361 absent in melanoma 1 [Homo sapiens] 28 1.2
gi|239741596 PREDICTED: hypothetical protein XP_002342245 [Homo ... 28 1.6
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 27 2.6
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 27 2.6
gi|54112394 calcium channel, voltage-dependent, alpha 2/delta su... 27 2.6
gi|54112392 calcium channel, voltage-dependent, alpha 2/delta su... 27 2.6
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 27 2.6
gi|118402578 anaphase-promoting complex, subunit 6 [Homo sapiens] 27 2.6
gi|118402580 anaphase-promoting complex, subunit 6 [Homo sapiens] 27 2.6
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a... 27 2.6
gi|58743316 neuromedin S [Homo sapiens] 27 3.5
gi|217330559 unc-51-like kinase 2 [Homo sapiens] 27 4.5
gi|217330557 unc-51-like kinase 2 [Homo sapiens] 27 4.5
gi|110832843 TBP-associated factor 4 [Homo sapiens] 27 4.5
gi|40804761 nanos homolog 1 [Homo sapiens] 27 4.5
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 27 4.5
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 27 4.5
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 27 4.5
gi|30039714 otopetrin 2 [Homo sapiens] 27 4.5
gi|151101459 SAPS domain family, member 1 [Homo sapiens] 26 5.9
gi|9558751 ADP-ribosylation factor binding protein 2 [Homo sapiens] 26 7.7
gi|194353964 coiled-coil domain containing 157 [Homo sapiens] 26 7.7
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 26 7.7
>gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 260 bits (665), Expect = 1e-70
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPWEDAQGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQW 60
MPWEDAQGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQW
Sbjct: 1 MPWEDAQGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQW 60
Query: 61 PGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLPG 117
PGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLPG
Sbjct: 61 PGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLPG 117
>gi|239745230 PREDICTED: hypothetical protein XP_002343393 [Homo
sapiens]
Length = 122
Score = 138 bits (347), Expect = 1e-33
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 58 FQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLPG 117
FQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLPG
Sbjct: 63 FQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLPG 122
>gi|169202942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 32.3 bits (72), Expect = 0.082
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 7 QGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQWPGVRAA 66
QGC GL +PT PG L H + L+ G +T ++S+ I + PG A
Sbjct: 129 QGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSENSFWILLKRPGGIAG 188
Query: 67 GGA 69
G A
Sbjct: 189 GVA 191
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 17/57 (29%)
Query: 69 APGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRT---------GRSSCLP 116
APGP R LP L P AP+ +PPGG ++ R+ G+ CLP
Sbjct: 429 APGPPPAR--------LPQLWDPTAAPYPTPPGGPLAATRSMFFNGQPSPGQRLCLP 477
>gi|239750092 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 7 QGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSD 51
QGC GL +PT PG L H + L+ G +T ++S+
Sbjct: 129 QGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSE 173
>gi|239744401 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 7 QGCLFHVPFTGLPEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSD 51
QGC GL +PT PG L H + L+ G +T ++S+
Sbjct: 129 QGCSLGTAGVGLLQPTLPGIPGSLSHVGSRTLLNSTGLNTSIRSE 173
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 65 AAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTG 110
AAG P+ P P G P CAP PPG G+ + R G
Sbjct: 87 AAGSPWRPWRPGPALAGALRFPGAHGRLCAP--PPPGLGLGQGRAG 130
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 43 GFSTQLKSDTLDVID-FQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPG 101
G S + T + D F R +GG+ Y F +Y L PC + PPG
Sbjct: 1427 GHSQSFEETTSQIDDSFSTKSCRVSGGSWVVYDGENFTGNQYVLEEGHYPCLSAMGCPPG 1486
Query: 102 GGVSELR 108
LR
Sbjct: 1487 ATFKSLR 1493
>gi|239741596 PREDICTED: hypothetical protein XP_002342245 [Homo
sapiens]
Length = 130
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 60 WPGVRAAGGAPGPYSPRPFW 79
WPG RAA AP P +PRP W
Sbjct: 76 WPGHRAAARAPLP-TPRPPW 94
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 61 PGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRS 112
PG R AP PRP P C P PPG + E R RS
Sbjct: 325 PGHRLVPAAPPGPGPRP--------PGAESHGCLPATRPPGSDLRESRVQRS 368
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 2.6
Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 59 QWPGVRAAGG----APGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGR 111
Q PG R G AP P P P LG P RP C P R P LR R
Sbjct: 43 QLPGARRGPGPRRPAPLPARP-PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHR 98
>gi|54112394 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform b [Homo sapiens]
Length = 1143
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 60 WPGVRAAGGAPGPYS-------PRPFWLGRYTLPTLRRPCCAPFRSP 99
WPG G PGP + PRP WL LP L P + + P
Sbjct: 22 WPG---CGPHPGPGTRRPTSGPPRPLWLLLPLLPLLAAPGASAYSFP 65
>gi|54112392 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform a [Homo sapiens]
Length = 1145
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 60 WPGVRAAGGAPGPYS-------PRPFWLGRYTLPTLRRPCCAPFRSP 99
WPG G PGP + PRP WL LP L P + + P
Sbjct: 22 WPG---CGPHPGPGTRRPTSGPPRPLWLLLPLLPLLAAPGASAYSFP 65
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 27.3 bits (59), Expect = 2.6
Identities = 31/110 (28%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 19 PEPTAPGKGLDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQWPGVRAAGGAPGPYSPR-- 76
P +APG+ L G C + GF Q G R GA G S +
Sbjct: 98 PSSSAPGEAAGLRAGPCDHPSSPGGFG-------------QTAGWRHRPGAAGLLSEQVP 144
Query: 77 --PFWLGRYTLPTLRR-------PCCAPFRSPPGGGVSELRTGRSSCLPG 117
W R LRR PC +P + G G E GR C G
Sbjct: 145 GTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEG 194
>gi|118402578 anaphase-promoting complex, subunit 6 [Homo sapiens]
Length = 620
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 28 LDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQWP 61
LD ++ C+YL + ++ + LDV+D + P
Sbjct: 65 LDKLYEACRYLAARCHYAAKEHQQALDVLDMEEP 98
>gi|118402580 anaphase-promoting complex, subunit 6 [Homo sapiens]
Length = 620
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 28 LDLMHGCCKYLVLKVGFSTQLKSDTLDVIDFQWP 61
LD ++ C+YL + ++ + LDV+D + P
Sbjct: 65 LDKLYEACRYLAARCHYAAKEHQQALDVLDMEEP 98
>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
[Homo sapiens]
Length = 410
Score = 27.3 bits (59), Expect = 2.6
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 13 VPFTGLPEPTAPGKGL-DLMHGCCKYL-VLKVGFSTQLKSDTLDVIDFQWPGVRAAGGAP 70
+PFTG+PEP+ P G L G Y + G L T V + +R A P
Sbjct: 195 LPFTGIPEPSEPLAGAGGLGWGGRGYEDYRRSGPPAPLALSTCVVRFAKTGALRGAALGP 254
Query: 71 GPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVS 105
P P T P P R PPG G S
Sbjct: 255 PAALPAPL--------TEAAPPAPPARPPPGPGPS 281
>gi|58743316 neuromedin S [Homo sapiens]
Length = 153
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 9 CLFHVPFTGLPEPTA-PGKGLDLM 31
C+ +P +G P+P A P GLD++
Sbjct: 18 CMLQIPSSGFPQPLADPSDGLDIV 41
>gi|217330559 unc-51-like kinase 2 [Homo sapiens]
Length = 1036
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 40 LKVGFSTQLKSDTLDVIDFQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSP 99
L+ G + + +DT + G R + G+ PYSP P +G T+P CC
Sbjct: 447 LRPGSCSPVPADTAQTV-----GRRLSTGSSRPYSPSPL-VG--TIPEQFSQCCC---GH 495
Query: 100 PGGGVSELRTGRSSCLP 116
P G S R S +P
Sbjct: 496 PQGHDSRSRNSSGSPVP 512
>gi|217330557 unc-51-like kinase 2 [Homo sapiens]
Length = 1036
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 40 LKVGFSTQLKSDTLDVIDFQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSP 99
L+ G + + +DT + G R + G+ PYSP P +G T+P CC
Sbjct: 447 LRPGSCSPVPADTAQTV-----GRRLSTGSSRPYSPSPL-VG--TIPEQFSQCCC---GH 495
Query: 100 PGGGVSELRTGRSSCLP 116
P G S R S +P
Sbjct: 496 PQGHDSRSRNSSGSPVP 512
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 61 PGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLP 116
P RA G GP P P R +P P A R PP G SC P
Sbjct: 91 PAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSA-------GSCAP 139
>gi|40804761 nanos homolog 1 [Homo sapiens]
Length = 292
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 69 APGPYSPRPF-----WLGRYTLPTLR---RPCCAPFRSPPGGGVSELRTGRSSC 114
APGP P+PF +LG TL T P R GGG S + SSC
Sbjct: 31 APGPAHPQPFSSWNDYLGLATLITKAVDGEPRFGCARGGNGGGGSPPSSSSSSC 84
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Query: 79 WLGRYTLPTLRRPCCAPFRSPPGGGVSELRTGRSSCLP 116
W G PTL R F P GGG L G LP
Sbjct: 956 WCGNEDNPTLGRCLQGDFSGPLGGGNCSLWVGEGLGLP 993
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
preproprotein [Homo sapiens]
Length = 1686
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 80 LGRYTLPTLRRPCCAPFRSPPGGG 103
LGR LPT+R CC SPP G
Sbjct: 1652 LGRCQLPTIRTQCCRSC-SPPSHG 1674
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 26.6 bits (57), Expect = 4.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 61 PGVRAAGGAPGPYSPR 76
PG++ G+PGPY P+
Sbjct: 303 PGIKGDKGSPGPYGPK 318
>gi|30039714 otopetrin 2 [Homo sapiens]
Length = 562
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 79 WLGRYTLPTLRRPCCAPFRSPPGGGV 104
W+ Y L T+R PC P+R G +
Sbjct: 76 WILFYLLRTVRCPCAVPYRDAHAGPI 101
>gi|151101459 SAPS domain family, member 1 [Homo sapiens]
Length = 881
Score = 26.2 bits (56), Expect = 5.9
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 62 GVRAAGGA-------PGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPGGGVSELRTG 110
G A GGA PGP P P W + P P AP SP G EL TG
Sbjct: 688 GCAARGGATPLSYPSPGPQPPGPSWTATFD-PV---PTDAP-TSPRVSGEEELHTG 738
>gi|9558751 ADP-ribosylation factor binding protein 2 [Homo
sapiens]
Length = 613
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 62 GVRAAGGAPGPYSPRPFWLGRYTLPTL 88
G +A G PGP + WL + T P++
Sbjct: 12 GTESAQGPPGPAASLELWLNKATDPSM 38
>gi|194353964 coiled-coil domain containing 157 [Homo sapiens]
Length = 752
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 14/46 (30%)
Query: 61 PGVRAAGGAPGPYSPRPFWLGRYTLPTLR-------RPCCAPFRSP 99
P V+A +PGP LGR LP+ R +PC +P R P
Sbjct: 639 PPVQAKSTSPGP-------LGRQHLPSSRTGRTLLGQPCTSPPRQP 677
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 19/63 (30%)
Query: 42 VGFSTQLKSDTLDVIDFQWPGVRAAGGAPGPYSPRPFWLGRYTLPTLRRPCCAPFRSPPG 101
V TQ LD + RA G APGP R P P RS PG
Sbjct: 65 VAIETQPAQGELDAV------ARATGPAPGPTGER-------------EPAAGPGRSGPG 105
Query: 102 GGV 104
G+
Sbjct: 106 PGL 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.145 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,416,996
Number of Sequences: 37866
Number of extensions: 333000
Number of successful extensions: 1011
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 38
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.