Guide to the Human Genome
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Name: NMS Sequence: fasta or formatted (153aa) NCBI GI: 58743316
Description:

neuromedin S

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         12           2
 C cysteine            2.0          3           1
 D aspartate           5.2          8           1
 E glutamate           2.6          4           1
 F phenylalanine       6.5         10           2
 G glycine             4.6          7           1
 H histidine           3.9          6           1
 I isoleucine          5.2          8           1
 K lysine              5.2          8           2
 L leucine            10.5         16           1
 M methionine          2.6          4           1
 N asparagine          2.6          4           1
 P proline             9.2         14           2
 Q glutamine           7.8         12           1
 R arginine            7.8         12           2
 S serine              4.6          7           2
 T threonine           4.6          7           1
 V valine              2.6          4           1
 W tryptophan          2.0          3           1
 Y tyrosine            2.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuromedin S 
NMU                   0.120   neuromedin U 
SUPT6H                0.023   suppressor of Ty 6 homolog 
MEIS2                 0.017   Meis homeobox 2 isoform g 
MEIS2                 0.017   Meis homeobox 2 isoform a 
MEIS2                 0.017   Meis homeobox 2 isoform d 
MEIS2                 0.017   Meis homeobox 2 isoform c 
MEIS2                 0.017   Meis homeobox 2 isoform b 
MEIS2                 0.017   Meis homeobox 2 isoform f 
SERPINB2              0.010   serine (or cysteine) proteinase inhibitor, clade B ...
SERPINB2              0.010   serine (or cysteine) proteinase inhibitor, clade B (o...
OGFOD1                0.010   2-oxoglutarate and iron-dependent oxygenase domain c...
LOC100292820          0.007   PREDICTED: hypothetical protein 
ZNF318                0.007   zinc finger protein 318 
DMXL1                 0.007   Dmx-like 1 
CCHCR1                0.007   coiled-coil alpha-helical rod protein 1 isoform 1 [...
CCHCR1                0.007   coiled-coil alpha-helical rod protein 1 isoform 2 [...
GEMIN4                0.007   gemin 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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