Guide to the Human Genome
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Name: LOC100131416 Sequence: fasta or formatted (382aa) NCBI GI: 239744401
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {293aa} PREDICTED: hypothetical protein
alt mRNA {382aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         33           2
 C cysteine            3.4         13           2
 D aspartate           2.9         11           2
 E glutamate           3.9         15           1
 F phenylalanine       2.9         11           2
 G glycine             8.9         34           2
 H histidine           5.2         20           2
 I isoleucine          1.6          6           1
 K lysine              3.4         13           2
 L leucine             9.7         37           2
 M methionine          1.0          4           1
 N asparagine          1.6          6           1
 P proline             7.1         27           2
 Q glutamine           6.5         25           3
 R arginine            9.4         36           3
 S serine              7.3         28           2
 T threonine           8.4         32           2
 V valine              6.0         23           2
 W tryptophan          1.8          7           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131416          1.000   PREDICTED: hypothetical protein 
LOC100131416          0.602   PREDICTED: hypothetical protein 
WDR81                 0.012   PREDICTED: WD repeat domain 81 
LOC100128014          0.009   PREDICTED: similar to hCG2040688 
LOC100128014          0.009   PREDICTED: hypothetical protein 
LOC100128014          0.009   PREDICTED: similar to hCG2040688 
LOC731282             0.009   PREDICTED: hypothetical protein 
LOC731282             0.009   PREDICTED: hypothetical protein 
LOC100133915          0.008   PREDICTED: hypothetical protein 
ADAMTS7               0.008   ADAM metallopeptidase with thrombospondin type 1 mot...
LOC100131283          0.008   PREDICTED: hypothetical protein 
LOC100131283          0.008   PREDICTED: hypothetical protein 
LOC100131283          0.008   PREDICTED: hypothetical protein 
ATN1                  0.008   atrophin-1 
ATN1                  0.008   atrophin-1 
RUNX2                 0.006   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.006   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.006   runt-related transcription factor 2 isoform c 
TRO                   0.006   trophinin isoform 5 
LINS1                 0.006   lines homolog 1 
LINS1                 0.006   lines homolog 1 
LINS1                 0.006   lines homolog 1 
DCHS1                 0.006   dachsous 1 precursor 
TUBA3E                0.006   tubulin, alpha 3e 
LINS1                 0.006   lines homolog 1 
LOC100292820          0.005   PREDICTED: hypothetical protein 
LOC100130255          0.005   PREDICTED: hypothetical protein 
LOC728347             0.005   PREDICTED: hypothetical protein 
LOC100130458          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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