Guide to the Human Genome
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Name: CDC16 Sequence: fasta or formatted (620aa) NCBI GI: 118402578
Description:

anaphase-promoting complex, subunit 6

Referenced in:

Anaphase-promoting Complex
Additional Cell Cycle Functions
Tetratricopeptide Domains

Other entries for this name:
alt mRNA [620aa] anaphase-promoting complex, subunit 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         50           2
 C cysteine            2.3         14           1
 D aspartate           5.6         35           2
 E glutamate           9.0         56           2
 F phenylalanine       4.0         25           2
 G glycine             3.5         22           1
 H histidine           3.7         23           2
 I isoleucine          3.5         22           2
 K lysine              7.1         44           2
 L leucine            11.9         74           2
 M methionine          3.1         19           2
 N asparagine          3.7         23           2
 P proline             3.4         21           2
 Q glutamine           3.4         21           3
 R arginine            4.0         25           2
 S serine              6.9         43           2
 T threonine           4.7         29           2
 V valine              4.8         30           3
 W tryptophan          1.5          9           1
 Y tyrosine            5.6         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   anaphase-promoting complex, subunit 6 
CDC16                 1.000   anaphase-promoting complex, subunit 6 
CDC27                 0.044   cell division cycle protein 27 isoform 1 
CDC27                 0.044   cell division cycle protein 27 isoform 2 
CDC23                 0.030   cell division cycle protein 23 
OGT                   0.028   O-linked GlcNAc transferase isoform 2 
OGT                   0.028   O-linked GlcNAc transferase isoform 1 
TMTC1                 0.019   transmembrane and tetratricopeptide repeat containin...
CTR9                  0.018   SH2 domain binding protein 1 
TMTC4                 0.015   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.015   transmembrane and tetratricopeptide repeat containi...
NPHP3                 0.013   nephrocystin 3 
IFT88                 0.012   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.012   intraflagellar transport 88 homolog isoform 2 
TTC28                 0.012   tetratricopeptide repeat domain 28 
TTC18                 0.010   tetratricopeptide repeat domain 18 
IFIT1                 0.010   interferon-induced protein with tetratricopeptide r...
BBS4                  0.010   Bardet-Biedl syndrome 4 
TMTC2                 0.010   transmembrane and tetratricopeptide repeat containin...
TTC7A                 0.010   tetratricopeptide repeat domain 7A 
GPSM1                 0.010   G-protein signaling modulator 1 (AGS3-like, C. eleg...
GPSM1                 0.010   G-protein signaling modulator 1 (AGS3-like, C. eleg...
KLC4                  0.008   kinesin-like 8 isoform b 
KLC4                  0.008   kinesin-like 8 isoform a 
KLC4                  0.008   kinesin-like 8 isoform a 
TTC7B                 0.008   tetratricopeptide repeat domain 7B 
TTC8                  0.007   tetratricopeptide repeat domain 8 isoform A 
TTC8                  0.007   tetratricopeptide repeat domain 8 isoform C 
TTC8                  0.007   tetratricopeptide repeat domain 8 isoform B 
SMG7                  0.007   SMG-7 homolog isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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