Guide to the Human Genome
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Name: LOC100131416 Sequence: fasta or formatted (293aa) NCBI GI: 169202942
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {382aa} PREDICTED: hypothetical protein
alt prot {382aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         28           2
 C cysteine            2.4          7           1
 D aspartate           2.4          7           2
 E glutamate           2.4          7           1
 F phenylalanine       3.1          9           2
 G glycine            10.9         32           2
 H histidine           5.5         16           2
 I isoleucine          2.0          6           1
 K lysine              1.7          5           1
 L leucine            11.9         35           2
 M methionine          1.4          4           1
 N asparagine          1.7          5           1
 P proline             7.2         21           2
 Q glutamine           6.8         20           3
 R arginine            7.2         21           1
 S serine              6.8         20           2
 T threonine           8.2         24           2
 V valine              7.8         23           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131416          0.810   PREDICTED: hypothetical protein 
LOC100131416          0.810   PREDICTED: hypothetical protein 
ELN                   0.019   elastin isoform e precursor 
ELN                   0.019   elastin isoform a precursor 
BTNL9                 0.017   butyrophilin-like 9 
ELN                   0.012   elastin isoform b precursor 
LOC100292820          0.012   PREDICTED: hypothetical protein 
MUC12                 0.012   PREDICTED: mucin 12 
LOC100131283          0.010   PREDICTED: hypothetical protein 
LOC100131283          0.010   PREDICTED: hypothetical protein 
LOC100131283          0.010   PREDICTED: hypothetical protein 
PUF60                 0.010   poly-U binding splicing factor 60KDa isoform c [Hom...
PUF60                 0.010   poly-U binding splicing factor 60KDa isoform b [Homo...
PUF60                 0.010   poly-U binding splicing factor 60KDa isoform a [Homo...
ELN                   0.009   elastin isoform d precursor 
ELN                   0.009   elastin isoform c precursor 
RUNX2                 0.009   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.009   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.009   runt-related transcription factor 2 isoform c 
DCHS1                 0.009   dachsous 1 precursor 
LOC100130458          0.007   PREDICTED: hypothetical protein 
LOC100130458          0.007   PREDICTED: hypothetical protein 
LOC100130458          0.007   PREDICTED: hypothetical protein 
TRO                   0.007   trophinin isoform 5 
CSPG5                 0.007   chondroitin sulfate proteoglycan 5 (neuroglycan C) ...
FAM48B1               0.007   hypothetical protein LOC100130302 
SIX5                  0.007   sine oculis homeobox homolog 5 
LOC100128511          0.005   PREDICTED: hypothetical protein 
LOC100128511          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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