Guide to the Human Genome
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Name: LOC100292782 Sequence: fasta or formatted (246aa) NCBI GI: 239755891
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         27           3
 C cysteine            1.6          4           1
 D aspartate           2.0          5           2
 E glutamate           4.5         11           1
 F phenylalanine       1.6          4           1
 G glycine            10.6         26           2
 H histidine           2.4          6           1
 I isoleucine          1.2          3           1
 K lysine              3.7          9           1
 L leucine             9.3         23           1
 M methionine          1.2          3           1
 N asparagine          0.8          2           1
 P proline            12.2         30           1
 Q glutamine           2.0          5           1
 R arginine           15.4         38           3
 S serine              7.3         18           2
 T threonine           7.7         19           6
 V valine              3.7          9           1
 W tryptophan          1.2          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
BSN                   0.040   bassoon protein 
LOC389333             0.037   hypothetical protein LOC389333 
SNAPC4                0.035   small nuclear RNA activating complex, polypeptide 4,...
PEX6                  0.035   peroxisomal biogenesis factor 6 
FLJ37078              0.031   hypothetical protein LOC222183 
LOC100131102          0.029   PREDICTED: hypothetical protein 
LOC100131102          0.029   PREDICTED: hypothetical protein 
VPS37C                0.027   vacuolar protein sorting 37C 
SRRM2                 0.027   splicing coactivator subunit SRm300 
LOC100291828          0.027   PREDICTED: hypothetical protein XP_002344932 
LOC100293818          0.027   PREDICTED: hypothetical protein 
LOC100288926          0.027   PREDICTED: hypothetical protein XP_002343509 
LOC100288568          0.027   PREDICTED: hypothetical protein XP_002343338 
LOC100291624          0.025   PREDICTED: hypothetical protein XP_002345876 
LOC643355             0.025   PREDICTED: hypothetical protein 
FLJ31945              0.025   PREDICTED: hypothetical protein 
LOC100289712          0.025   PREDICTED: hypothetical protein XP_002346761 
LOC643355             0.025   PREDICTED: hypothetical protein 
FLJ31945              0.025   PREDICTED: hypothetical protein 
LOC100288686          0.025   PREDICTED: hypothetical protein XP_002342615 
LOC100287455          0.025   PREDICTED: hypothetical protein XP_002342583 
LOC643355             0.025   PREDICTED: hypothetical protein 
DACT3                 0.025   thymus expressed gene 3-like 
FLJ22184              0.025   PREDICTED: hypothetical protein LOC80164 
ZNF469                0.025   zinc finger protein 469 
ITIH4                 0.025   inter-alpha (globulin) inhibitor H4 
LOC100289661          0.025   PREDICTED: hypothetical protein 
LOC100289661          0.025   PREDICTED: hypothetical protein XP_002343723 
FBRSL1                0.025   fibrosin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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