Guide to the Human Genome
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Name: LOC100291820 Sequence: fasta or formatted (76aa) NCBI GI: 239755782
Description:

PREDICTED: hypothetical protein XP_002344710

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6          5           1
 C cysteine            0.0          0           0
 D aspartate           1.3          1           1
 E glutamate           7.9          6           1
 F phenylalanine       1.3          1           1
 G glycine            14.5         11           2
 H histidine           2.6          2           1
 I isoleucine          0.0          0           0
 K lysine              1.3          1           1
 L leucine             6.6          5           2
 M methionine          1.3          1           1
 N asparagine          2.6          2           1
 P proline            18.4         14           2
 Q glutamine           3.9          3           1
 R arginine           17.1         13           2
 S serine              9.2          7           2
 T threonine           1.3          1           1
 V valine              2.6          2           1
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344710 
LOC100290594          1.000   PREDICTED: hypothetical protein XP_002347343 
LOC100288347          1.000   PREDICTED: hypothetical protein XP_002343230 
KLC2                  0.079   kinesin light chain 2 isoform 1 
KLC2                  0.079   kinesin light chain 2 isoform 1 
KLC2                  0.079   kinesin light chain 2 isoform 2 
KLC2                  0.079   kinesin light chain 2 isoform 1 
PRB3                  0.072   proline-rich protein BstNI subfamily 3 precursor [H...
COL5A1                0.065   alpha 1 type V collagen preproprotein 
COL25A1               0.065   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.065   collagen, type XXV, alpha 1 isoform 2 
PRB4                  0.065   proline-rich protein BstNI subfamily 4 precursor [Ho...
LOC651986             0.058   PREDICTED: similar to forkhead box L2 
LOC100288524          0.058   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.058   PREDICTED: similar to forkhead box L2 
COL1A2                0.058   alpha 2 type I collagen 
LOC642515             0.058   PREDICTED: similar to NG5 protein 
LOC642515             0.058   PREDICTED: similar to NG5 protein 
PRB2                  0.058   proline-rich protein BstNI subfamily 2 
PRB1                  0.058   proline-rich protein BstNI subfamily 1 isoform 1 pre...
EMID1                 0.058   EMI domain containing 1 
COL5A2                0.050   alpha 2 type V collagen preproprotein 
COL9A2                0.050   alpha 2 type IX collagen 
ADRA2A                0.050   alpha-2A-adrenergic receptor 
LOC729570             0.050   PREDICTED: hypothetical protein 
LOC729570             0.050   PREDICTED: hypothetical protein 
LOC729570             0.050   PREDICTED: hypothetical protein 
ZNF828                0.050   zinc finger protein 828 
WIPF1                 0.050   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.050   WAS/WASL interacting protein family, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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